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Structures of Pseudomonas aeruginosa β-ketoacyl-(acyl-carrier-protein) synthase II (FabF) and a C164Q mutant provide templates for antibacterial drug discovery and identify a buried potassium ion and a ligand-binding site that is an artefact of the crystal form

Three crystal structures of recombinant P. aeruginosa FabF are reported: the apoenzyme, an active-site mutant and a complex with a fragment of a natural product inhibitor. The characterization provides reagents and new information to support antibacterial drug discovery. Bacterial infections remain a serious health concern, in particular causing life-threatening infections of hospitalized and immunocompromised patients. The situation is exacerbated by the rise in antibacterial drug resistance, and new treatments are urgently sought. In this endeavour, accurate structures of molecular targets can support early-stage drug discovery. Here, crystal structures, in three distinct forms, of recombinant Pseudomonas aeruginosa β-ketoacyl-(acyl-carrier-protein) synthase II (FabF) are presented. This enzyme, which is involved in fatty-acid biosynthesis, has been validated by genetic and chemical means as an antibiotic target in Gram-positive bacteria and represents a potential target in Gram-negative bacteria. The structures of apo FabF, of a C164Q mutant in which the binding site is altered to resemble the substrate-bound state and of a complex with 3-(benzoylamino)-2-hydroxybenzoic acid are reported. This compound mimics aspects of a known natural product inhibitor, platensimycin, and surprisingly was observed binding outside the active site, interacting with a symmetry-related molecule. An unusual feature is a completely buried potassium-binding site that was identified in all three structures. Comparisons suggest that this may represent a conserved structural feature of FabF relevant to fold stability. The new structures provide templates for structure-based ligand design and, together with the protocols and reagents, may underpin a target-based drug-discovery project for urgently needed antibacterials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

In silico discovery of metal-organic frameworks for precombustion CO 2 capture using a genetic algorithm

Discovery of new adsorbent materials with a high CO 2 working capacity could help reduce CO 2 emissions from newly commissioned power plants using precombustion carbon capture. High-throughput computational screening efforts can accelerate the discovery of new adsorbents but sometimes require significant computational resources to explore the large space of possible materials. Here in this paper we report the in silico discovery of high-performing adsorbents for precombustion CO 2 capture by applying a genetic algorithm to efficiently search a large database of metal-organic frameworks (MOFs) for top candidates. High-performing MOFs identified from the in silico search were synthesized and activated and show a high CO 2 working capacity and a high CO 2 /H 2 selectivity. One of the synthesized MOFs shows a higher CO 2 working capacity than any MOF reported in the literature under the operating conditions investigated here.

36 MATERIALS SCIENCE↗

IMG-ABC. A knowledge base to fuel discovery of biosynthetic gene clusters and novel secondary metabolites

In the discovery of secondary metabolites, analysis of sequence data is a promising exploration path that remains largely underutilized due to the lack of computational platforms that enable such a systematic approach on a large scale. In this work, we present IMG-ABC (https://img.jgi.doe.gov/abc), an atlas of biosynthetic gene clusters within the Integrated Microbial Genomes (IMG) system, which is aimed at harnessing the power of “big” genomic data for discovering small molecules. IMG-ABC relies on IMG’s comprehensive integrated structural and functional genomic data for the analysis of biosynthetic gene clusters (BCs) and associated secondary metabolites (SMs). SMs and BCs serve as the two main classes of objects in IMG-ABC, each with a rich collection of attributes. A unique feature of IMG-ABC is the incorporation of both experimentally validated and computationally predicted BCs in genomes as well as metagenomes, thus identifying BCs in uncultured populations and rare taxa. We demonstrate the strength of IMG-ABC’s focused integrated analysis tools in enabling the exploration of microbial secondary metabolism on a global scale, through the discovery of phenazine-producing clusters for the first time in lphaproteobacteria . IMG-ABC strives to fill the long-existent void of resources for computational exploration of the secondary metabolism universe; its underlying scalable framework enables traversal of uncovered phylogenetic and chemical structure space, serving as a doorway to a new era in the discovery of novel molecules. IMG-ABC is the largest publicly available database of predicted and experimental biosynthetic gene clusters and the secondary metabolites they produce. The system also includes powerful search and analysis tools that are integrated with IMG’s extensive genomic/metagenomic data and analysis tool kits. As new research on biosynthetic gene clusters and secondary metabolites is published and more genomes are sequenced, IMG-ABC will continue to expand, with the goal of becoming an essential component of any bioinformatic exploration of the secondary metabolism world.

59 BASIC BIOLOGICAL SCIENCES↗

mDNS to support local price server discovery with OpenADR 3 (mDNS for OpenADR 3) v1.0

This software contains a template VEN with local VTN service discovery over mDNS. It provides common starter code for an OpenADR3.0 VEN that advertises itself over mDNS, conducts local VTN service discovery over mDNS, connects to the VTN over HTTP(S), and regularly polls and acts on energy prices and events hosted on the VTN. The software is written to be easily modified to accommodate different VEN appliances, VEN-VTN networking protocols, user interfaces, and default responses, given the wide range of possible use cases for local price server discovery. OpenADR3.0 is an open communications standard from the OpenADR Alliance that is designed to provide two-way information exchange regarding e.g., dynamic price and event signals to utility applications, so that customers can modify their energy usage to save money and reduce their carbon footprint.

Nordman, Bruce [Lawrence Berkeley National Laborat↗

Discovery of Nuclides Project

The Discovery of Nuclides project compiles detailed discovery information for all naturally occurring and artificially produced nuclides. The short abstracts for each nuclide include the authors, institution, country, year, method of discovery, and reference. The database contains over 3300 nuclides and is continuously updated as new nuclides are discovered. The work is performed at the Facility for Rare Isotope Beams (FRIB) and is supported by the U.S. Department of Energy, Office of Nuclear Physics under Grant No. DE-SC0016948 and Michigan State University. The FRIB Nuclear Data group is responsible for coordinating and updating the database.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

Switchgrass (Panicum virgatum L.) is a perennial grass that has been designated as an herbaceous model biofuel crop for the United States of America. To facilitate accelerated breeding programs of switchgrass, we developed both an association panel and linkage populations for genome-wide association study (GWAS) and genomic selection (GS). All of the 840 individuals were then genotyped using genotyping by sequencing (GBS), generating 350 GB of sequence in total. As a highly heterozygous polyploid (tetraploid and octoploid) species lacking a reference genome, switchgrass is highly intractable with earlier methodologies of single nucleotide polymorphism (SNP) discovery. To access the genetic diversity of species like switchgrass, we developed a SNP discovery pipeline based on a network approach called the Universal Network-Enabled Analysis Kit (UNEAK). Complexities that hinder single nucleotide polymorphism discovery, such as repeats, paralogs, and sequencing errors, are easily resolved with UNEAK. Here, 1.2 million putative SNPs were discovered in a diverse collection of primarily upland, northern-adapted switchgrass populations. Further analysis of this data set revealed the fundamentally diploid nature of tetraploid switchgrass. Taking advantage of the high conservation of genome structure between switchgrass and foxtail millet (Setaria italica (L.) P. Beauv.), two parent-specific, synteny-based, ultra high-density linkage maps containing a total of 88,217 SNPs were constructed. Also, our results showed clear patterns of isolation-by-distance and isolation-by-ploidy in natural populations of switchgrass. Phylogenetic analysis supported a general south-to-north migration path of switchgrass. In addition, this analysis suggested that upland tetraploid arose from upland octoploid. All together, this study provides unparalleled insights into the diversity, genomic complexity, population structure, phylogeny, phylogeography, ploidy, and evolutionary dynamics of switchgrass.

59 BASIC BIOLOGICAL SCIENCES↗

The clinical impact of recent advances in LC-MS for cancer biomarker discovery and verification

Mass spectrometry-based proteomics has become an indispensable tool in biomedical research with broad applications ranging from fundamental biology, systems biology, and biomarker discovery. Recent advances in LC-MS have made it become a major technology in clinical applications, especially in cancer biomarker discovery and verification. To overcome the challenges associated with the analysis of clinical samples, such as extremely wide dynamic range of protein concentrations in biofluids and the need to perform high throughput and accurate quantification, significant efforts have been devoted to improve the overall performance of LC-MS bases clinical proteomics. In this review, we summarize the recent advances in LC-MS in the aspect of cancer biomarker discovery and quantification, and discuss its potentials, limitations, and future perspectives.

Environmental Molecular Sciences Laboratory↗

Challenges at the Frontiers of Matter and Energy: Transformative Opportunities for Discovery Science

FIVE TRANSFORMATIVE OPPORTUNITIES FOR DISCOVERY SCIENCE As a result of this effort, it has become clear that the progress made to date on the five Grand Challenges has created a springboard for seizing five new Transformative Opportunities that have the potential to further transform key technologies involving matter and energy. These five new Transformative Opportunities and the evidence supporting them are discussed in this new report, “Challenges at the Frontiers of Matter and Energy: Transformative Opportunities for Discovery Science.” Mastering Hierarchical Architectures and Beyond-Equilibrium Matter Complex materials and chemical processes transmute matter and energy, for example from CO2 and water to chemical fuel in photosynthesis, from visible light to electricity in solar cells and from electricity to light in light emitting diodes (LEDs) Such functionality requires complex assemblies of heterogeneous materials in hierarchical architectures that display time-dependent away-from-equilibrium behaviors. Much of the foundation of our understanding of such transformations however, is based on monolithic single- phase materials operating at or near thermodynamic equilibrium. The emergent functionalities enabling next-generation disruptive energy technologies require mastering the design, synthesis, and control of complex hierarchical materials employing dynamic far-from-equilibrium behavior. A key guide in this pursuit is nature, for biological systems prove the power of hierarchical assembly and far- from-equilibrium behavior. The challenges here are many: a description of the functionality of hierarchical assemblies in terms of their constituent parts, a blueprint of atomic and molecular positions for each constituent part, and a synthesis strategy for (a) placing the atoms and molecules in the proper positions for the component parts and (b) arranging the component parts into the required hierarchical structure. Targeted functionality will open the door to significant advances in the harvesting, transforming (e.g., reducing CO2, splitting water, and fixing nitrogen), storing, and use of energy to create new materials, manufacturing processes, and technologies—the lifeblood of human societies and economic growth. Beyond Ideal Materials and Systems: Understanding the Critical Roles of Heterogeneity, Interfaces, and Disorder Real materials, both natural ones and those we engineer, are usually a complex mixture of compositional and structural heterogeneities, interfaces, and disorder across all spatial and temporal scales. It is the fluctuations and disorderly states of these heterogeneities and interfaces that often determine the system’s properties and functionality. Much of our fundamental scientific knowledge is based on “ideal” systems, meaning materials that are observed in “frozen” states or represented by spatially or temporally averaged states. Too often, this approach has yielded overly simplistic models that hide important nuances and do not capture the complex behaviors of materials under realistic conditions. These behaviors drive vital chemical transformations such as catalysis, which initiates most industrial manufacturing processes, and friction and corrosion, the parasitic effects of which cost the U.S. economy billions of dollars annually. Expanding our scientific knowledge from the relative simplicity of ideal, perfectly ordered, or structurally averaged materials to the true complexity of real-world heterogeneities, interfaces, and disorder should enable us to realize enormous benefits in the materials and chemical sciences, which translates to the energy sciences, including solar and nuclear power, hydraulic fracturing, power conversion, airframes, and batteries. Harnessing Coherence in Light and Matter Quantum coherence in light and matter is a measure of the extent to which a wave field vibrates in unison with itself at neighboring points in space and time. Although this phenomenon is expressed at the atomic and electronic scales, it can dominate the macroscopic properties of materials and chemical reactions such as superconductivity and efficient photosynthesis. In recent years, enormous progress has been made in recognizing, manipulating, and exploiting quantum coherence. This progress has already elucidated the role that symmetry plays in protecting coherence in key materials, taught us how to use light to manipulate atoms and molecules, and provided us with increasingly sophisticated techniques for controlling and probing the charges and spins of quantum coherent systems. With the arrival of new sources of coherent light and electron beams, thanks in large part to investments by the U.S. Department of Energy’s Office of Basic Energy Sciences (BES), there is now an opportunity to engineer coherence in heterostructures that incorporate multiple types of materials and to control complex, multistep chemical transformations. This approach will pave the way for quantum information processing and next-generation photovoltaic cells and sensors. Revolutionary Advances in Models, Mathematics, Algorithms, Data, and Computing Science today is benefiting from a convergence of theoretical, mathematical, computational, and experimental capabilities that put us on the brink of greatly accelerating our ability to predict, synthesize, and control new materials and chemical processes, and to understand the complexities of matter across a range of scales. Imagine being able to chart a path through a vast sea of possible new materials to find a select few with desired properties. Instead of the time-honored forward approach, in which materials with desired properties are found through either trial-and-error experiments or lucky accidents, we have the opportunity to inversely design and create new materials that possess the properties we desire. The traditional approach has allowed us to make only a tiny fraction of all the materials that are theoretically possible. The inverse design approach, through the harmonious convergence of theoretical, mathematical, computational, and experimental capabilities, could usher in a virtual cornucopia of new materials with functionalities far beyond what nature can provide. Similarly, enhanced mathematical and computational capabilities significantly enhance our ability to extract physical and chemical insights from vastly larger data streams gathered during multimodal and multidimensional experiments using advanced characterization facilities. Exploiting Transformative Advances in Imaging Capabilities across Multiple Scales Historically, improvements in imaging capabilities have always resulted in improved understanding of scientific phenomena. A prime challenge today is finding ways to reconstruct raw data, obtained by probing and mapping matter across multiple scales, into analyzable images. BES investments in new and improved imaging facilities, most notably synchrotron x-ray sources, free-electron lasers, electron microscopes, and neutron sources, have greatly advanced our powers of observation, as have substantial improvements in laboratory- scale technologies. Furthermore, BES is now planning or actively discussing exciting new capabilities. Taken together, these advances in imaging capabilities provide an opportunity to expand our ability to observe and study matter from the 3D spatial perspectives of today to true “4D” spatially and temporally resolved maps of dynamics that allow quantitative predictions of time-dependent material properties and chemical processes. The knowledge gained will impact data storage, catalyst design, drug delivery, structural materials, and medical implants, to name just a few key technologies. ENABLING SUCCESS Seizing each of these five Transformative Opportunities, as well as accelerating further progress on Grand Challenge research, will require specific, targeted investments from BES in the areas of synthesis, meaning the ability to make the materials and architectures that are envisioned; instrumentation and tools, a category that includes theory and computation; and human capital, the most important asset for advancing the Grand Challenges and Transformative Opportunities. While “Challenges at the Frontiers of Matter and Energy: Transformative Opportunities for Discovery Science” could be viewed as a sequel to the original Grand Challenges report, it breaks much new ground in its assessment of the scientific landscape today versus the scientific landscape just a few years ago. In the original Grand Challenges report, it was noted that if the five Grand Challenges were met, our ability to direct matter and energy would be measured only by the limits of human imagination. This new report shows that, prodded by those challenges, the scientific community is positioned today to seize new opportunities whose impacts promise to be transformative for science and society, as well as dramatically accelerate progress in the pursuit of the original Grand Challenges.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Automated Discovery for Emulytics

Sandia has an extensive background in cybersecurity research and is currently extending its state-of-the-art modeling via emulation capability. However, a key part of Sandia's modeling methodology is the discovery and specification of the information-system under study, and the ability to recreate that specification with the highest fidelity possible in order to extrapolate meaningful results. This work details a method to conduct information system discovery and develop tools to enable the creation of high-fidelity emulation models that can be used to enable assessment of our infrastructure information system security posture and potential system impacts that could result from cyber threats. The outcome are a set of tools and techniques to go from network discovery of operational systems to emulating complex systems. As a concrete usecase, we have applied these tools and techniques at Supercomputing 2016 to model SCinet, the world's largest research network. This model includes five routers and nearly 10,000 endpoints which we have launched in our emulation platform.

97 MATHEMATICS AND COMPUTING↗

Improving Discovery, Sharing, and Use of Water Data: Initial Findings and Suggested Future Work

Collaborative management of water resources requires a broad suite of “water data” that extends beyond basic information about water quantity and quality to other related topics such as water infrastructure, aquatic ecosystem health, socioeconomic factors, and power generation. Water data are disparate in nature because they are collected and provided by many entities, and in some cases, remain challenging to access and use. The U.S. Department of Energy’s Water Power Technologies Office initiated a project to characterize relevant categories of water data; describe the current state of accessing, using, and visualizing water data; and outline investigatory pathways for future efforts aimed at improving the discovery, sharing, and use of water data. Input on these topics was solicited from a small but diverse cross section of members of the water resources community. Fourteen broad categories of water data were identified: dams; ecology; flood control; hydroclimatology; hydrography; hydrology; hydropower; management landscape; migratory barriers; recreation and aesthetic importance; socioeconomic; water quality; water availability and use; and weather. Stakeholder perspectives on the accessibility and usability of water data indicate these aspects are affected by a complex set of technical and social factors. However, stakeholders generally agreed that better access to water data can provide a range of benefits to water management, and they stressed the need to generate broad support from water data users and producers. Two investigatory pathways were outlined that, taken together, provide a logical progression toward the goals of the project. The first pathway emphasizes further investigation to better define target audiences and data needs, identify opportunities for collaboration between related efforts, and conduct value demonstration activities to generate further support for improving discovery and access of water data. The second pathway focuses on creating a comprehensive vision for potential solutions that improve the discovery of water data. Several activities that align with the first pathway are suggested for the next phase of the project.

13 HYDRO ENERGY↗

Toward a Seamless Integration of Computing, Experimental, and Observational Science Facilities: A Blueprint to Accelerate Discovery

The Department of Energy, Office of Science operates world-leading facilities for experimental, observational, and computational science. DOE supercomputing facilities will reach performance at the scale of ExaFLOPs in the coming years, enabling new vistas of scale and precision for large scale simulations and data analysis. Experimental scientific facilities are undergoing similar upgrades that will lead to higher data rates and correspondingly larger computational demands, and will increase the need for near-real-time processing and resilient support for more complex workflows. A transformation of science is underway, with workloads at supercomputing facilities increasingly driven by this explosion of data from instruments and experimental facilities, as well as the accelerating use of Artificial Intelligence (AI) as a tool for scientific discovery. A seamless integration of computing, networking, instruments, and experimental facilities is required to support these emerging workloads and open up a new frontier of U.S. leadership in scientific discovery. We propose to accomplish this by providing frictionless access to the ASCR supercomputing facilities. We describe our vision of combining the power of ASCR supercomputers and networking infrastructure into an integrated scalable fabric, available to end user scientists via interfaces that aim to automate and simplify access to high performance computing systems. This will enable unprecedented computational science capabilities for experimental and observational facilities, and will create new opportunities to combine large simulations and modeling with experimental facility data analysis. This blueprint for creating an integrated network of computational and experimental facilities will provide an enriched discovery environment and open doors for new scientific communities to access the DOE’s world-leading computing and networking capabilities.

97 MATHEMATICS AND COMPUTING↗

Benchmarking the PCMCI Causal Discovery Algorithm for Spatiotemporal Systems

Causal discovery algorithms construct hypothesized causal graphs that depict causal dependencies among variables in observational data. While powerful, the accuracy of these algorithms is highly sensitive to the underlying dynamics of the system in ways that have not been fully characterized in the literature. In this report, we benchmark the PCMCI causal discovery algorithm in its application to gridded spatiotemporal systems. Effectively computing grid-level causal graphs on large grids will enable analysis of the causal impacts of transient and mobile spatial phenomena in large systems, such as the Earth’s climate. We evaluate the performance of PCMCI with a set of structural causal models, using simulated spatial vector autoregressive processes in one- and two-dimensions. We develop computational and analytical tools for characterizing these processes and their associated causal graphs. Our findings suggest that direct application of PCMCI is not suitable for the analysis of dynamical spatiotemporal gridded systems, such as climatological data, without significant preprocessing and downscaling of the data. PCMCI requires unrealistic sample sizes to achieve acceptable performance on even modestly sized problems and suffers from a notable curse of dimensionality. This work suggests that, even under generous structural assumptions, significant additional algorithmic improvements are needed before causal discovery algorithms can be reliably applied to grid-level outputs of earth system models.

54 ENVIRONMENTAL SCIENCES↗

Improved Biofuel Production through Discovery and Engineering of Terpene Metabolism in Switchgrass

Project Objectives - Of the myriad specialized metabolites that plants deploy to adapt to environmental challenges, terpenes form the largest group. In many major crops, unique terpene blends serve as key stress defenses that directly impact plant fitness and yield. In addition, terpenes, such as bisabolene and pinene, are used for producing renewable biofuels. Essential to advancing a broader use of terpenes for biofuel feedstock engineering is a system-wide knowledge of the diverse biosynthetic machinery and defensive potential of often species-specific terpene blends. The proposed project would merge genome-wide enzyme discovery with comparative –omics, protein structural and plant microbiome studies to define the biosynthesis and stress-defensive functions of the switchgrass (Panicum virgatum) terpene network. These insights would be combined with developing and applying non-transgenic genome editing tools to design plants with desirable terpene blends for higher productivity and biofuel production on marginal lands. As a dedicated lignocellulosic feedstock for U.S. biofuel production with high net energy yield, stress tolerance, and available genome resources, switchgrass is well-suited for devising new avenues for biofuel production. Project Description – The diversity of plant terpene defenses is governed by species-specific families of terpene synthase (TPS) and cytochrome P450 monooxygenase (P450) enzymes. Mining of the switchgrass genome (genotype Alamo) identified ~100 TPS and P450 candidate genes, and combinatorial biochemical analysis of synthesized TPSs and P450s revealed more than a dozen enzymes with common and novel activities. In addition, several identified terpene metabolites and the corresponding transcripts were up-regulated in response to abiotic stressors. These findings demonstrate a unique switchgrass terpene network with probable importance to abiotic stress tolerance, thus providing a large chemical portfolio for optimizing crop resistance, yield, and biofuel composition. Leveraging these preliminary data, we propose to generate a genome-wide map of the switchgrass terpene metabolic network through multi-gene co-expression analyses that allow the efficient cross-validation of TPS and P450 functions. Key enzymes would further be applied to structure-function studies via X-ray protein crystallography, homology modeling and site-directed mutagenesis to gain mechanistic insight into the catalytic specificity of switchgrass terpene metabolism and provide gene and amino acid targets for genome editing. In tandem with terpene pathway discovery, system-wide metabolomics, transcriptomics and proteomics studies in switchgrass accessions of contrasting drought tolerance would define the role of switchgrass terpene metabolism in conferring abiotic stress resilience. Metabolic changes would be assessed in a combined approach of targeted (terpenes) and untargeted metabolite profiling using a high-resolution LC-MS/MS approach, differential gene expression analyses through multiplexed Illumina RNA sequencing, and quantitative analysis of high-priority pathway enzymes using multiple reaction monitoring (MRM). Drawing on these insights, knock-down/out mutants of stress-associated pathway nodes would be generated by optimizing transient virus-induced gene silencing (VIGS) and CRISPR/Cas9 systems under control of the Tobacco Rattle Virus (TRV). The resulting mutant lines would then be analyzed for stress susceptibility and the impact on the root microbiome to define gene functions in planta. Knowledge of terpene pathways, enzyme mechanisms and bioactivities would be applied to enhance switchgrass stress resilience and to tailor-make terpene blends for biofuel production. Here, TRV-enabled CRISPR/Cas9 genome editing, including allele-specific knock-out of redundant genes, engineering of enzyme specificity via structure-guided point mutations, and overexpression of terpene genes relevant to stress-protection or biofuel production, would be used to increase metabolic flux toward desired pathways. Broader Impacts - Integrating the system-wide discovery, mechanistic analysis and non-transgenic genome engineering of the switchgrass terpene network aligns the required steps to unlock the chemical potential of this important metabolite class to generate crops that are more resistant to stress and provide advanced biofuel production in light of rising climate pressures as foreseeable challenges for bioenergy crop cultivation. The proposed project would further offer interdisciplinary student training through active involvement in the project and integration of research concepts and outcomes into newly-developed graduate and undergraduate courses on Plant Biotechnology.

09 BIOMASS FUELS↗

Discovery Science and Inertial Fusion Energy Research at the Jupiter Laser Facility (Research Performance Progress Report)

The goal of this project is to provide operational support to run the Jupiter Laser Facility within the LaserNetUS network to achieve the following four objectives: • Develop new science, techniques, and platforms for discovery science and IFE research, in partnership with academia, other LaserNetUS nodes, and the greater community. • Advance the development of secondary sources of photons and particles for applications relevant to discovery science and IFE; • Serve as a testbed for new laser, optical, target, and diagnostic capabilities that will advance IFE; • Attract, train, and retain talent in high-energy-density and laser science that will be essential in furthering development of IFE, and help build new collaborations between national laboratory and academic researchers. We have accomplished our four objectives by: • Providing access to the three JLF platforms (Titan, Janus, and COMET) to LaserNetUS users after their proposals have been independently reviewed and ranked by the LaserNetUS PRP; • Providing expertise and technical capabilities to support focused science research thrusts at the facility; • Promoting and maintaining technical relationships and collaborations with other members of the LaserNetUS community to nurture and grow the discovery science and IFE workforce— especially students and early career scientists—on LaserNetUS facilities. • Augmenting JLF with specific improvements while coordinating efforts with LLNL organizations and collaborators to provide users with optimal laser, target, and diagnostic resources to help them maximize technical impact.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A goldilocks computational protocol for inhibitor discovery targeting DNA damage responses including replication-repair functions

While many researchers can design knockdown and knockout methodologies to remove a gene product, this is mainly untrue for new chemical inhibitor designs that empower multifunctional DNA Damage Response (DDR) networks. Here, we present a robust Goldilocks (GL) computational discovery protocol to efficiently innovate inhibitor tools and preclinical drug candidates for cellular and structural biologists without requiring extensive virtual screen (VS) and chemical synthesis expertise. By computationally targeting DDR replication and repair proteins, we exemplify the identification of DDR target sites and compounds to probe cancer biology. Our GL pipeline integrates experimental and predicted structures to efficiently discover leads, allowing early-structure and early-testing (ESET) experiments by many laboratories. By employing an efficient VS protocol to examine protein-protein interfaces (PPIs) and allosteric interactions, we identify ligand binding sites beyond active sites, leveraging in silico advances for molecular docking and modeling to screen PPIs and multiple targets. A diverse 3,174 compound ESET library combines Diamond Light Source DSI-poised, Protein Data Bank fragments, and FDA-approved drugs to span relevant chemotypes and facilitate downstream hit evaluation efficiency for academic laboratories. Two VS per library and multiple ranked ligand binding poses enable target testing for several DDR targets. This GL library and protocol can thus strategically probe multiple DDR network targets and identify readily available compounds for early structural and activity testing to overcome bottlenecks that can limit timely breakthrough drug discoveries. By testing accessible compounds to dissect multi-functional DDRs and suggesting inhibitor mechanisms from initial docking, the GL approach may enable more groups to help accelerate discovery, suggest new sites and compounds for challenging targets including emerging biothreats and advance cancer biology for future precision medicine clinical trials.

59 BASIC BIOLOGICAL SCIENCES↗

Discovery of a Natural Product That Binds to the Mycobacterium tuberculosis Protein Rv1466 Using Native Mass Spectrometry

Elucidation of the mechanism of action of compounds with cellular bioactivity is important for progressing compounds into future drug development. In recent years, phenotype-based drug discovery has become the dominant approach to drug discovery over target-based drug discovery, which relies on the knowledge of a specific drug target of a disease. Still, when targeting an infectious disease via a high throughput phenotypic assay it is highly advantageous to identifying the compound’s cellular activity. A fraction derived from the plant Polyalthia sp. showed activity against Mycobacterium tuberculosis at 62.5 μge/μL. A known compound, altholactone, was identified from this fraction that showed activity towards M. tuberculosis at an minimum inhibitory concentration (MIC) of 64 μM. Retrospective analysis of a target-based screen against a TB proteome panel using native mass spectrometry established that the active fraction was bound to the mycobacterial protein Rv1466 with an estimated pseudo-Kd of 42.0 ± 6.1 µM. Our findings established Rv1466 as the potential molecular target of altholactone, which is responsible for the observed in vivo toxicity towards M. tuberculosis .

59 BASIC BIOLOGICAL SCIENCES↗

The GMRT High Resolution Southern Sky Survey for pulsars and transients. I. survey description and initial discoveries

We are conducting a survey for pulsars and transients using the Giant Metrewave Radio Telescope (GMRT). The GMRT High Resolution Southern Sky (GHRSS) survey is an off-Galactic plane (|b| > 5) survey in the declination range −40° to −54° at 322 MHz. With the high time (up to 30.72 μs) and frequency (up to 0.016275 MHz) resolution observing modes, the 5σ detection limit is 0.5 mJy for a 2 ms pulsar with a 10% duty cycle at 322 MHz. The total GHRSS sky coverage of 2866 deg{sup 2} will result from 1953 pointings, each covering 1.8 deg{sup 2}. The 10σ detection limit for a 5 ms transient burst is 1.6 Jy for the GHRSS survey. In addition, the GHRSS survey can reveal transient events like rotating radio transients or fast radio bursts. With 35% of the survey completed (i.e., 1000 deg{sup 2}), we report the discovery of 10 pulsars, 1 of which is a millisecond pulsar (MSP), which is among the highest pulsar per square degree discovery rates for any off-Galactic plane survey. We re-detected 23 known in-beam pulsars. Utilizing the imaging capability of the GMRT, we also localized four of the GHRSS pulsars (including the MSP) in the gated image plane within ±10″. We demonstrated rapid convergence in pulsar timing with a more precise position than is possible with single-dish discoveries. We also show that we can localize the brightest transient sources with simultaneously obtained lower time resolution imaging data, demonstrating a technique that may have application in the Square Kilometre Array.

79 ASTRONOMY AND ASTROPHYSICS↗

DISCOVERY OF A MAKEMAKEAN MOON

We describe the discovery of a satellite in orbit about the dwarf planet (136472) Makemake. This satellite, provisionally designated S/2015 (136472) 1, was detected in imaging data collected with the Hubble Space Telescope ’s Wide Field Camera 3 on UTC 2015 April 27 at 7.80 ± 0.04 mag fainter than Makemake and at a separation of 0.″57. It likely evaded detection in previous satellite searches due to a nearly edge-on orbital configuration, placing it deep within the glare of Makemake during a substantial fraction of its orbital period. This configuration would place Makemake and its satellite near a mutual event season. Insufficient orbital motion was detected to make a detailed characterization of its orbital properties, prohibiting a measurement of the system mass with the discovery data alone. Preliminary analysis indicates that if the orbit is circular, its orbital period must be longer than 12.4 days and must have a semimajor axis ≳21,000 km. We find that the properties of Makemake’s moon suggest that the majority of the dark material detected in the system by thermal observations may not reside on the surface of Makemake, but may instead be attributable to S/2015 (136472) 1 having a uniform dark surface. This “dark moon hypothesis” can be directly tested with future James Webb Space Telescope observations. We discuss the implications of this discovery for the spin state, figure, and thermal properties of Makemake and the apparent ubiquity of trans-Neptunian dwarf planet satellites.

79 ASTRONOMY AND ASTROPHYSICS↗