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At least 235 records · Page 13

Enhancing risk and crisis communication with computational methods: A systematic literature review

Abstract Recent developments in risk and crisis communication (RCC) research combine social science theory and data science tools to construct effective risk messages efficiently. However, current systematic literature reviews (SLRs) on RCC primarily focus on computationally assessing message efficacy as opposed to message efficiency. We conduct an SLR to highlight any current computational methods that improve message construction efficacy and efficiency. We found that most RCC research focuses on using theoretical frameworks and computational methods to analyze or classify message elements that improve efficacy. For improving message efficiency, computational and manual methods are only used in message classification. Specifying the computational methods used in message construction is sparse. We recommend that future RCC research apply computational methods toward improving efficacy and efficiency in message construction. By improving message construction efficacy and efficiency, RCC messaging would quickly warn and better inform affected communities impacted by current hazards. Such messaging has the potential to save as many lives as possible.

Mathematical Methods In Social Sciences↗

Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison

For the two proteins myoglobin and fluoroacetate dehalogenase, we present a systematic comparison of crystallographic diffraction data collected by serial femtosecond (SFX) and serial synchrotron crystallography (SSX). To maximize comparability, we used the same batch of micron-sized crystals, the same sample delivery device, and the same data analysis software. Overall figures of merit indicate that the data of both radiation sources are of equivalent quality. For both proteins, reasonable data statistics can be obtained with approximately 5000 room-temperature diffraction images irrespective of the radiation source. The direct comparability of SSX and SFX data indicates that the quality of diffraction data obtained from these samples is linked to the properties of the crystals rather than to the radiation source. Therefore, for other systems with similar properties, time-resolved experiments can be conducted at the radiation source that best matches the desired time resolution.

59 BASIC BIOLOGICAL SCIENCES↗

Systematic modification of functionality in disordered elastic networks through free energy surface tailoring

A combined machine learning–physics–based approach is explored for molecular and materials engineering. Specifically, collective variables, akin to those used in enhanced sampled simulations, are constructed using a machine learning model trained on data gathered from a single system. Through the constructed collective variables, it becomes possible to identify critical molecular interactions in the considered system, the modulation of which enables a systematic tailoring of the system’s free energy landscape. To explore the efficacy of the proposed approach, we use it to engineer allosteric regulation and uniaxial strain fluctuations in a complex disordered elastic network. Its successful application in these two cases provides insights regarding how functionality is governed in systems characterized by extensive connectivity and points to its potential for design of complex molecular systems.

42 ENGINEERING↗

Development of systematic uncertainty-aware neural network trainings for binned-likelihood analyses at the LHC

We propose a neural network training method capable of accounting for the effects of systematic variations of the data model in the training process and describe its extension towards neural network multiclass classification. The procedure is evaluated on the realistic case of the measurement of Higgs boson production via gluon fusion and vector boson fusion in the τ τ decay channel at the CMS experiment. The neural network output functions are used to infer the signal strengths for inclusive production of Higgs bosons as well as for their production via gluon fusion and vector boson fusion. We observe improvements of 12 and 16% in the uncertainty in the signal strengths for gluon and vector-boson fusion, respectively, compared with a conventional neural network training based on cross-entropy.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Systematics of the chemical freeze-out line in the high baryon density regime explored at SIS100

The systematic uncertainties of chemical freeze-out fits at SIS100 energies (Au+Au reactions at $\sqrt{s_{NN}}$ = 3 – 5 GeV) are studied using UrQMD simulations. Although hadron production in UrQMD does not occur on a sharp chemical freeze-out hyper-surface, the extracted fit quality is shown to be very good. The extracted chemical parameters depend on the selected hadron species as well as the underlying equation of state (EoS) of the matter. Including light nuclei and anti-protons in the fit increases the expected freeze-out temperature, while a stiffer EoS increases the obtained chemical potential. Similarly, the baryon densities extracted by the thermal fits depend on the choice of hadrons as well as the underlying equation of state. These results are important for the upcoming CBM@FAIR physics program and highlight that a degree of caution is advised when one relates the chemical freeze-out curve to features on the QCD phase diagram like the critical endpoint or a possible phase transition.

Hofmann, Emma Lilith [GSI Helmholtzzentrum für Sch↗

Systematic investigation of the particle spectra in heavy-ion collisions at the Large Hadron Collider

We investigate the charged particle spectra produced in the heavy-ion collisions at nine centralities from different systems, i.e. Pb+Pb at √ s NN = 2.76 TeV and 5.02 TeV as well as Xe+Xe at √ s NN = 5.44 TeV, at Large Hadron Collider (LHC) using one empirical formula inspired by the stationary solution of the Fokker-Planck equation, dubbed as the generalized Fokker-Planck solution (GFPS). Our results show that the GFPS can reproduce the experimental particle spectrum up to transverse momentum pT about 45 GeV/c with the maximum discrepancy 30% covering 10 orders of magnitude. Here, the discrepancy between the data and the results from the GFPS decreases to 15% when the maximum of the charged particle transverse momentum is cut to 20 GeV/c. We confirmed that the Tsallis distribution derived from the non-extensive statistics, which can reproduce the particle spectra produced in small collision systems, such as p+p, up to few hundreds GeV/c, can only apply to systematically study the particle spectra up to 8 GeV/c in A+A collisions at LHC, as pointed out in the study of identified particle spectra in Pb+Pb collisions at √ s NN = 2.76 TeV. A brief discussion on GFPS is also given.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

QUEST: systematically approximating Quantum circuits for higher output fidelity

We present QUEST, a procedure to systematically generate approximations for quantum circuits to reduce their CNOT gate count. Our approach employs circuit partitioning for scalability with procedures to 1) reduce circuit length using approximate synthesis, 2) improve fidelity by running circuits that represent key samples in the approximation space, and 3) reason about approximation upper bound. Our evaluation results indicate that our approach of "dissimilar"approximations provides close fidelity to the original circuit. Overall, the results indicate that QUEST can reduce CNOT gate count by 30-80% on ideal systems and decrease the impact of noise on existing and near-future quantum systems.

Patel, Tirthak↗

A systematic analysis and data mining of opioid-related adverse events submitted to the FAERS database

The opioid epidemic has become a serious national crisis in the United States. An indepth systematic analysis of opioid-related adverse events (AEs) can clarify the risks presented by opioid exposure, as well as the individual risk profiles of specific opioid drugs and the potential relationships among the opioids. In this study, 92 opioids were identified from the list of all Food and Drug Administration (FDA)-approved drugs, annotated by RxNorm and were classified into 13 opioid groups: buprenorphine, codeine, dihydrocodeine, fentanyl, hydrocodone, hydromorphone, meperidine, methadone, morphine, oxycodone, oxymorphone, tapentadol, and tramadol. A total of 14,970,399 AE reports were retrieved and downloaded from the FDA Adverse Events Reporting System (FAERS) from 2004, Quarter 1 to 2020, Quarter 3. After data processing, Empirical Bayes Geometric Mean (EBGM) was then applied which identified 3317 pairs of potential risk signals within the 13 opioid groups. Based on these potential safety signals, a comparative analysis was pursued to provide a global overview of opioid-related AEs for all 13 groups of FDA-approved prescription opioids. The top 10 most reported AEs for each opioid class were then presented. Both network analysis and hierarchical clustering analysis were conducted to further explore the relationship between opioids. Results from the network analysis revealed a close association among fentanyl, oxycodone, hydrocodone, and hydromorphone, which shared more than 22 AEs. In addition, much less commonly reported AEs were shared among dihydrocodeine, meperidine, oxymorphone, and tapentadol. On the contrary, the hierarchical clustering analysis further categorized the 13 opioid classes into two groups by comparing the full profiles of presence/absence of AEs. The results of network analysis and hierarchical clustering analysis were not only consistent and cross-validated each other but also provided a better and deeper understanding of the associations and relationships between the 13 opioid groups with respect to their adverse effect profiles.

Research & Experimental Medicine↗

A systematic decision-making methodology to formalize the selection of degree of realism in screening analysis of probabilistic risk assessment

In the nuclear power domain, Probabilistic Risk Assessment (PRA) is used to inform decision-making for Nuclear Power Plants (NPPs). Recently, there has been an increase in the utilization of modeling and simulation (M&S) to support the estimation of PRA inputs. Risk analysts should carefully select the PRA items that require M&S and their degree of realism (DoR) with consideration of the required resources. To support this selection, this article formulates a systematic decision-making approach for the DoR selection. The DoR selection is made based on two predictive decision-making attributes: the predicted differences in safety risk estimate (ΔSaRi) and the cost of analysis (ΔCAN). This research also develops and quantifies causal models to estimate ΔSaRi and ΔCAN. The causal model-based prediction of ΔSaRi and ΔCAN helps reduce the trial-and-error nature of the DoR selection in the PRA screening analysis and provides insights for DoR selection and the gradual refinements of PRA realism. This approach is demonstrated for a case study on fire PRA of NPPs, where an adequate DoR is selected from two fire models: an engineering correlation and a zone model.

Alkhatib, Sari [Department of Nuclear, Plasma, and↗

Systematic approaches to C-lignin engineering in Medicago truncatula

Abstract Background C-lignin is a homopolymer of caffeyl alcohol present in the seed coats of a variety of plant species including vanilla orchid, various cacti, and the ornamental plant Cleome hassleriana . Because of its unique chemical and physical properties, there is considerable interest in engineering C-lignin into the cell walls of bioenergy crops as a high-value co-product of bioprocessing. We have used information from a transcriptomic analysis of developing C. hassleriana seed coats to suggest strategies for engineering C-lignin in a heterologous system, using hairy roots of the model legume Medicago truncatula . Results We systematically tested strategies for C-lignin engineering using a combination of gene overexpression and RNAi-mediated knockdown in the caffeic acid/5-hydroxy coniferaldehyde 3/5-O-methyltransferase ( comt ) mutant background, monitoring the outcomes by analysis of lignin composition and profiling of monolignol pathway metabolites. In all cases, C-lignin accumulation required strong down-regulation of caffeoyl CoA 3- O -methyltransferase (CCoAOMT) paired with loss of function of COMT. Overexpression of the Selaginella moellendorffii ferulate 5-hydroxylase ( SmF5H ) gene in comt mutant hairy roots resulted in lines that unexpectedly accumulated high levels of S-lignin. Conclusion C-Lignin accumulation of up to 15% of total lignin in lines with the greatest reduction in CCoAOMT expression required the strong down-regulation of both COMT and CCoAOMT, but did not require expression of a heterologous laccase, cinnamyl alcohol dehydrogenase (CAD) or cinnamoyl CoA reductase (CCR) with preference for 3,4-dihydroxy-substituted substrates in M. truncatula hairy roots. Cell wall fractionation studies suggested that the engineered C-units are not present in a heteropolymer with the bulk of the G-lignin.

09 BIOMASS FUELS↗

Application of artificial intelligence methods in the international roughness index prediction of rigid and composite pavements: a systematic review

The International Roughness Index (IRI) is a widely adopted metric for quantifying pavement roughness, directly influencing vehicle safety, ride comfort, and overall roadway performance. In recent years, the use of Machine Learning (ML) models for IRI prediction has gained momentum, with the goal of improving the allocation of maintenance and rehabilitation resources by enabling accurate assessments of pavement conditions. Most prior reviews, however, have concentrated on flexible pavements, leaving a notable gap regarding rigid and composite pavements. To address this gap, the present study conducts a systematic review of Artificial Intelligence (AI) methods applied to IRI prediction for rigid and composite pavements. Literature published between 2004 and 2025 is synthesized to highlight prevailing trends, methodological contributions, and directions for future research. Particular attention is given to the types of models employed, the datasets used for training and validation, and the role of input variables and data-processing strategies. Across the included studies, ensemble learning methods (especially gradient boosting variants such as XGBoost), artificial neural networks, and hybrid architectures frequently achieved high predictive skill, with several models reporting test-set coefficients of determination approaching 0.9–0.96, indicating strong potential for capturing the influence of traffic, pavement structure, and climatic factors. Since these results are obtained from heterogeneous datasets and evaluation protocols, they are interpreted qualitatively rather than as strict cross-study rankings. Analysis of input variables revealed that pavement age and initial IRI were included in 91% (21 of 23) and 78% (18 of 23) of studies, respectively. Climatic variables such as the freezing index appeared in 57% (13 of 23), while traffic-related factors were considered in 65% (15 of 23). The findings underscore the importance of standardized, high-quality datasets, such as those from the Long-Term Pavement Performance (LTPP) program, along with data consistency, model interpretability, computational efficiency, and replicability in enhancing IRI prediction. Future research should focus on incorporating input variable selection techniques to identify the most influential predictors, thereby improving accuracy and robustness. Integrating these approaches with advanced non-linear data-driven models, coupled with robust hyperparameter optimization, holds considerable promise for strengthening the reliability of IRI prediction and supporting resilient pavement management strategies.

42 ENGINEERING↗

The Simons Observatory: modeling optical systematics in the Large Aperture Telescope

We present geometrical and physical optics simulation results for the Simons Observatory Large Aperture Telescope. This work was developed as part of the general design process for the telescope, allowing us to evaluate the impact of various design choices on performance metrics and potential systematic effects. The primary goal of the simulations was to evaluate the final design of the reflectors and the cold optics that are now being built. We describe nonsequential ray tracing used to inform the design of the cold optics, including absorbers internal to each optics tube. We discuss ray tracing simulations of the telescope structure that allow us to determine geometries that minimize detector loading and mitigate spurious near-field effects that have not been resolved by the internal baffling. We also describe physical optics simulations, performed over a range of frequencies and field locations, that produce estimates of monochromatic far-field beam patterns, which in turn are used to gauge general optical performance. Finally, we describe simulations that shed light on beam sidelobes from panel gap diffraction.

Gudmundsson, Jon E. (ORCID:0000000317600355)↗

Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages

Phages are one of the key ecological drivers of microbial community dynamics, function, and evolution. Despite their importance in bacterial ecology and evolutionary processes, phage genes are poorly characterized, hampering their usage in a variety of biotechnological applications. Methods to characterize such genes, even those critical to the phage life cycle, are labor intensive and are generally phage specific. Here, we develop a systematic gene essentiality mapping method scalable to new phage–host combinations that facilitate the identification of nonessential genes. As a proof of concept, we use an arrayed genome-wide CRISPR interference (CRISPRi) assay to map gene essentiality landscape in the canonical coliphages λ and P1. Results from a single panel of CRISPRi probes largely recapitulate the essential gene roster determined from decades of genetic analysis for lambda and provide new insights into essential and nonessential loci in P1. We present evidence of how CRISPRi polarity can lead to false positive gene essentiality assignments and recommend caution towards interpreting CRISPRi data on gene essentiality when applied to less studied phages. Finally, we show that we can engineer phages by inserting DNA barcodes into newly identified inessential regions, which will empower processes of identification, quantification, and tracking of phages in diverse applications.

59 BASIC BIOLOGICAL SCIENCES↗

Modeling Systematic Discrepancies in Nuclear-Data Measurements with Machine Learning

Nuclear data and their associated co-variances are constantly being reevaluated as techniques improve and as new experimental data, as well as nuclearmodel developments, emerge. A standard technique used to evaluate mean values in nuclear data, and their associated covariances, is the generalized linear least squares (GLLS) method. Aligning with recent efforts to incorporate measurement features into nuclear data evaluation, we augment GLLS by including a linear term which attempts to predict potential systematic discrepancies in experimental data as related to the measurement features. Due to the general nature of this augmentation, we are able to apply this evaluation to three key observables: neutroninduced fission cross sections, the average prompt neutron multiplicity, and the prompt-fission neutron spectrum of ²³⁹Pu.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Systematic Calculation of Pu Pourbaix Diagrams: Modelling Support for the LANL ACRSP Team

The report enclosed entitled “Systematic Calculation of Pu Pourbaix Diagrams: Modelling Support of the LANL ACRSP Team” was prepared by Amphos21 under contract to the Los Alamos National Laboratory Actinide Chemistry and Repository Science Program (ACRSP) team to support an enhanced understanding of the actinide and brine chemistry in the Waste Isolation Pilot Plant (WIPP) transuranic repository. In this report, the ThermoChimie chemistry model and database, with some slight modifications, were used to calculate Pourbaix diagrams to investigate the effects of ionic strength, organic complexation, and metal competition on the predominance diagrams for aqueous and solid plutonium species under the anoxic and reducing conditions expected in the repository. These diagrams were connected to iron chemistry phase diagrams since this iron chemistry is expected to define and control redox properties in the WIPP repository concept.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Alignment of the straw tracking detectors for the Fermilab Muon $g − 2$ experiment and systematic studies for a muon electric dipole moment measurement

The Fermilab Muon $g-2$ experiment is currently preparing for its fourth data-taking period (Run-4). The experiment-wide effort on the analysis of Run-1 data is nearing completion, with the announcement of the first result expected in the coming months. The final goal of the experiment is to determine the muon magnetic anomaly to a precision of 140 ppb. This level of precision will provide indirect evidence of new physics, if the central value agrees with the previously-measured value of the magnetic anomaly. Essential in reducing the systematic uncertainty, through measurements of the muon beam profile, are the in-vacuum straw tracking detectors. A crucial prerequisite in obtaining accurate distributions of the beam profile is the internal alignment of the tracking detectors, which is described in this thesis. As a result of this position calibration, the tracking efficiency has increased by 3%, while the track quality increased by 4%. This thesis also discusses an additional measurement that will be made using the tracking detectors: a search for an electric dipole moment (EDM) of the muon, through the direct detection of an oscillation in the average vertical angle of the electron from the muon decay. An observation of a muon EDM would be evidencemore » of new physics and would provide a new source of CP violation in the charged lepton sector. Essential in measuring the EDM are accurate and precise estimations of potential non-zero radial and longitudinal magnetic fields, which were estimated using the Run-1 data. In addition, a preliminary analysis using the Run-1 data was undertaken to estimate the available precision for the magnetic anomaly measurement using the tracking detectors.« less

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Systematic Study of Spectrometer-Induced Azimuthal Asymmetries for SpinQuest

SpinQuest is a transversely polarized Drell-Yan experiment at Fermilab that will measure the Sivers asymmetry for the light antiquarks in the nucleon, using polarized NH3 and ND3 targets and the SeaQuest (E906) spectrometer. Measuring a non-zero Sivers asymmetry would provide strong evidence for non-zero sea-quark orbital angular momentum. Due to the time-dependence of the spectrometer efficiency, and the fluctuations of the beam luminosity, a false azimuthal asymmetry can be introduced that could masquerade as a Sivers asymmetry. In this study, a systematic study of false azimuthal asymmetries using SeaQuest data is presented. This work is supported by the US Department of Energy, Office of Science, Medium Energy Nuclear Physics Program.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗