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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 235 records · Page 13
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes

Here, organohalide-respiring bacteria play key roles in the natural chlorine cycle; however, most of the current knowledge is based on cultures from contaminated environments. We demonstrate that grape pomace compost without prior exposure to chlorinated solvents harbors a Dehalogenimonas ( Dhgm ) species capable of using chlorinated ethenes, including the human carcinogen and common groundwater pollutant vinyl chloride (VC) as electron acceptors. Grape pomace microcosms and derived solid-free enrichment cultures were able to dechlorinate trichloroethene (TCE) to less chlorinated daughter products including ethene. 16S rRNA gene amplicon and qPCR analyses revealed the predominance of Dhgm sequences, but no Dehalococcoides mccartyi ( Dhc ) biomarker genes were detected. The enumeration of Dhgm 16S rRNA genes demonstrated VC-dependent growth, and 6.55 ± 0.64 x 10 8 cells were produced per µmole of chloride released. Metagenome sequencing enabled the assembly of a Dhgm draft genome, and 52 putative reductive dehalogenase (RDase) genes were identified. Proteomic workflows identified a putative VC RDase with 49% and 56.1% amino acid similarity to the known VC RDases VcrA and BvcA, respectively. A survey of 1,173 groundwater samples collected from 111 chlorinated solvent-contaminated sites revealed that Dhgm 16S rRNA genes were frequently detected and outnumbered Dhc in 65% of the samples. Dhgm may be more relevant contributors to chlorinated solvent reductive dechlorination in contaminated aquifers than is currently recognized, and non-polluted environments are a source of strictly organohalide-respiring bacteria with novel RDase genes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Heterotrophic respiration by soil microbes in a changing climate

Soil microbes strongly influence the soil organic carbon (SOC) pool, which globally stores ~2,000 PgC. Specifically, the balance between microbial heterotrophic respiration (R H ), which degrades SOC, and plant–microbe interactions that stabilize SOC determines whether terrestrial ecosystems are a net source or sink of CO 2 to the atmosphere. Here, in this Review, we evaluate how climate change alters these competing processes. R H is approximately half of total soil respiration, at ~50 PgC yr −1 , with 70% occurring in topsoils. Warming accelerates microbial metabolism, with a 10 °C temperature increase estimated to raise R H by ~50%, an effect that is particularly strong in Arctic soils. Warming also reduces soil moisture, further modulating R H , which responds nonlinearly to soil moisture, being limited by saturation and desiccation and meeting a maximum at intermediate levels. Consequently, R H is highly sensitive to future precipitation changes and drought. However, soil management strategies could enhance SOC stocks and persistence under climate change. Bacterial and fungal inoculants can promote SOC production and stabilization, while deep-rooting plants increase SOC inputs to deeper layers that experience lower R H . Agricultural practices and biochar amendments can also enhance SOC and reduce R H . Expanding field trials across regions, climates and soil types would improve empirical understanding of these responses and support better representation of R H in predictive models, enabling more accurate assessments of climate impacts on SOC storage.

Jansson, Janet K. [Pacific Northwest National Labo↗
DOE OSTI2016

Unraveling the mechanisms underlying pulse dynamics of soil respiration in tropical dry forests

Tropical dry forests are already undergoing changes in the quantity and timing of rainfall, but there is great uncertainty over how these shifts will affect belowground carbon (C) cycling. While it has long been known that dry soils quickly release carbon dioxide (CO 2 ) upon rewetting, the mechanisms underlying the so-called 'Birch effect' are still debated. Here, we quantified soil respiration pulses and their biotic predictors in response to simulated precipitation events in a regenerating tropical dry forest in Costa Rica. We also simulated the observed rewetting CO 2 pulses with two soil carbon models: a conventional model assuming first-order decay rates of soil organic matter, and an enzyme-catalyzed model with Michaelis–Menten kinetics. We found that rewetting of dry soils produced an immediate and dramatic pulse of CO 2 , accompanied by rapid immobilization of nitrogen into the microbial biomass. However, the magnitude of the rewetting CO 2 pulse was highly variable at fine spatial scales, and was well correlated with the size of the dissolved organic C pool prior to rewetting. Both the enzyme-catalyzed and conventional models were able to reproduce the Birch effect when respiration was coupled directly to microbial C uptake, although models differed in their ability to yield realistic estimates of SOC and microbial biomass pool sizes and dynamics. Lastly, our results suggest that changes in the timing and intensity of rainfall events in tropical dry forests will exert strong influence on ecosystem C balance by affecting the dynamics of microbial biomass growth.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Updated respiration routines alter spatio-temporal patterns of carbon cycling in a global land surface model

Abstract We updated the routines used to estimate leaf maintenance respiration (MR) in the Energy Land Model (ELM) using a comprehensive global respiration data base. The updated algorithm includes a temperature acclimating base rate, an updated instantaneous temperature response, and new plant functional type specific parameters. The updated MR algorithm resulted in a very large increase in global MR of 16.1 Pg (38%), but the signal was not geographically uniform. The increase was concentrated in the tropics and humid warm-temperate forests. The increase in MR led to large but proportionally smaller decreases in global net primary production (19%) and in average global leaf area index (15%). The effect on global gross primary production (GPP) was a more modest 5.7 Pg (4%). A detailed site level analysis also demonstrated a wide range of effects the updated algorithm can have on the seasonal cycle of GPP. Output from the updated and old models did not differ markedly in how closely they matched a suite of benchmarks. Given the substantial impact on the land surface carbon cycle, a neutral influence on model benchmarks, and better alignment with empirical evidence, an MR algorithm similar to the one presented here should be adopted into ELM.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Hemerythrins enhance aerobic respiration in Methylomicrobium alcaliphilum 20ZR, a methane-consuming bacterium

ABSTRACT Numerous hemerythrins, di-iron proteins, have been identified in prokaryote genomes, but in most cases their function remains elusive. Bacterial hemerythrin homologs (bacteriohemerythrins, Bhrs) may contribute to various cellular functions, including oxygen sensing, metal binding and antibiotic resistance. It has been proposed that methanotrophic Bhrs support methane oxidation by supplying oxygen to a core enzyme, particulate methane monooxygenase. In this study, the consequences of the overexpression or deletion of the Bhr gene (bhr) in Methylomicrobiam alcaliphillum 20ZR were investigated. We found that the bhrknockout (20ZRΔbhr) displays growth kinetics and methane consumption rates similar to wild type. However, the 20ZRΔbhr accumulates elevated concentrations of acetate at aerobic conditions, indicating slowed respiration. The methanotrophic strain overproducing Bhr shows increased oxygen consumption and reduced carbon-conversion efficiency, while its methane consumption rates remain unchanged. These results suggest that the methanotrophic Bhr proteins specifically contribute to oxygen-dependent respiration, while they have minimal, if any, input of oxygen for the methane oxidation machinery.

Nariya, Snehal↗
DOE OSTI2021

Foliar respiration is related to photosynthetic, growth and carbohydrate response to experimental drought and elevated temperature

Short-term plant respiration (R) increases exponentially with rising temperature, but drought could reduce respiration by reducing growth and metabolism. Acclimation may alter these responses. We examined if species with different drought responses would differ in foliar R response to +4.8°C temperature and -45% precipitation in a field experiment with mature piñon and juniper trees, and if any differences between species were related to differences in photosynthesis rates, shoot growth and non-structural carbohydrates (NSCs). Short-term foliar R had a Q 10 of 1.6 for piñon and 2.6 for juniper. Piñon foliar R did not respond to the +4.8°C temperatures, but R increased 1.4x for juniper. Across treatments, piñon foliage had higher growth, lower NSC content, 29% lower photosynthesis rates, and 44% lower R than juniper. Removing 45% precipitation had little impact on R for either species. Species differences in the response of R under elevated temperature were related to substrate availability and stomatal response to leaf water potential. Despite not acclimating to the higher temperature and having higher R than piñon, greater substrate availability in juniper suggests it could supply respiratory demand for much longer than piñon. Species responses will be critical in ecosystem response to a warmer climate.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Viscous control of cellular respiration by membrane lipid composition

Lipid composition determines the physical properties of biological membranes and can vary substantially between and within organisms. We describe a specific role for the viscosity of energy-transducing membranes in cellular respiration. Engineering of fatty acid biosynthesis in Escherichia coli allowed us to titrate inner membrane viscosity across a 10-fold range by controlling the abundance of unsaturated or branched lipids. These fluidizing lipids tightly controlled respiratory metabolism, an effect that can be explained with a quantitative model of the electron transport chain (ETC) that features diffusion-coupled reactions between enzymes and electron carriers (quinones). Lipid unsaturation also modulated mitochondrial respiration in engineered budding yeast strains. Thus, diffusion in the ETC may serve as an evolutionary constraint for lipid composition in respiratory membranes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Ultrastructure of Organohalide-Respiring Dehalococcoidia Revealed by Cryo-Electron Tomography

Dehalococcoides mccartyi (Dhc) and Dehalogenimonas spp. (Dhgm) are members of the class Dehalococcoidia, phylum Chloroflexi, characterized by streamlined genomes and a strict requirement for organohalogens as electron acceptors. Here, we used cryo-electron tomography to reveal morphological and ultrastructural features of Dhc strain BAV1 and “Candidatus Dehalogenimonas etheniformans” strain GP cells at unprecedented resolution. Dhc cells were irregularly shaped discs (890 ± 110 nm long, 630 ± 110 nm wide, and 130 ± 15 nm thick) with curved and straight sides that intersected at acute angles, whereas Dhgm cells appeared as slightly flattened cocci (760 ± 85 nm). The cell envelopes were composed of a cytoplasmic membrane (CM), a paracrystalline surface layer (S-layer) with hexagonal symmetry and ~22-nm spacing between repeating units, and a layer of unknown composition separating the CM and the S-layer. Cell surface appendages were only detected in Dhc cells, whereas both cell types had bundled cytoskeletal filaments. Repetitive globular structures, ~5 nm in diameter and ~9 nm apart, were observed associated with the outer leaflet of the CM. We hypothesized that those represent organohalide respiration (OHR) complexes and estimated ~30,000 copies per cell. In Dhgm cultures, extracellular lipid vesicles (20 to 110 nm in diameter) decorated with putative OHR complexes but lacking an S-layer were observed. Furthermore, the new findings expand our understanding of the unique cellular ultrastructure and biology of organohalide-respiring Dehalococcoidia.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2015

Spatial distribution of an uranium-respiring betaproteobacterium at the Rifle, CO field research site

The Department of Energy’s Integrated Field-Scale Subsurface Research Challenge Site (IFRC) at Rifle, Colorado was created to address the gaps in knowledge on the mechanisms and rates of U(VI) bioreduction in alluvial sediments. Previous studies at the Rifle IFRC have linked microbial processes to uranium immobilization during acetate amendment. Several key bacteria believed to be involved in radionuclide containment have been described; however, most of the evidence implicating uranium reduction with specific microbiota has been indirect. Here, we report on the cultivation of a microorganism from the Rifle IFRC that reduces uranium and appears to utilize it as a terminal electron acceptor for respiration with acetate as electron donor. Furthermore, this bacterium constitutes a significant proportion of the subsurface sediment community prior to biostimulation based on TRFLP profiling of 16S rRNA genes. 16S rRNA gene sequence analysis indicates that the microorganism is a betaproteobacterium with a high similarity to Burkholderia fungorum . This is, to our knowledge, the first report of a betaproteobacterium capable of uranium respiration. Our results indicate that this microorganism occurs commonly in alluvial sediments located between 3-6 m below ground surface at Rifle and may play a role in the initial reduction of uranium at the site.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2023

Aerobic respiration controls on shale weathering, Geochimica et Cosmochimica Acta, 2023: Dataset

This data package was generated in order to support the development of a deep-time weathering model and to assess the coupling between shale weathering and aerobic respiration in the paper “Aerobic respiration controls on shale weathering” by Stolze et al., Geochimica et Cosmochimica Acta (2023). The package contains two csv files providing the average CO2(g) concentration profiles [ppm] and mineral concentration profiles [wt%], respectively. The CO2(g) concentration profiles were measured in the vicinity of the monitoring well PLM2 between January 2018 and April 2019. The gas samples were collected in the unsaturated zone to a depth of 1.52 m. The mineral concentration profiles were determined by X-Ray diffraction (XRD). The XRD measurements were performed on sub-core samples collected in the monitoring well PLM3 down to a depth of 7.01 m. The dataset additionally includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata; and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type.Update on 2024-05-28: Revised versions of the CSV data files (CO2_data_GCA_Stolze_et_al_2023.csv and XRD_data_GCA_Stolze_et_al_2023.csv) were made to apply ESS-DIVE's CSV reporting format guidelines. Updated versions of the File Level Metadata (v2_20240528_flmd.csv) and Data Dictionary (v2_20240528_dd.csv) files were updated to reflect the changes made to the CSV files.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Data and scripts associated with “Point-scale organic-matter decomposition in streambeds is weakly associated with reach-scale respiration”

This data package is associated with “Point-scale organic-matter decomposition in streambeds is weakly associated with reach-scale respiration” published in EGU Biogeosciences (Stegen et al., 2026; https://doi.org/10.5194/bg-23-3981-2026). It contains cotton strip decomposition rates (Kcd and Kdd) collected across the Yakima River Basin (YRB), Washington, USA. These data were collected to support a broader study examining the drivers of spatial variability in sediment respiration rates in the Yakima River Basin. Associated data used in analysis, metadata, and field protocols can be accessed at https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1923689, https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1969566, and https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1987520. This data package is associated with the repository found at https://github.com/river-corridors-sfa/rcsfa-ST-2B-SSS-cotton-strip. A preliminary version of this data package was published in December 2025 at the time of manuscript submission. It was updated in June 2026, at the time of manuscript acceptance, to include additional metadata (this readme, data dictionary, and file level metadata). The data did not change. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. In addition to a readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes all column/row headers and variable definitions. This data package consists of (1) readme; (2) data dictionary (dd); (3) file level metadata (flmd); and (4) four folders: (1) R-scripts; (2) figures; (3) outputs from the scripts; and (4) published data. The published data folder contains a readme directing the user to download data in order to run the R-scripts. All files are .csv, .pdf, .R, .Rmd, and .txt. We acknowledge the Yakama Nation as owners and caretakers of the lands where we collected these data. We thank the Confederated Tribes and Bands of the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate sample collection and optimization of data usage according to their values and worldview.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Files and scripts to support manuscript Needham et al. Canopy Gradients of Respiration

This dataset includes the parameter files, relevant output files, and scripts to perform analysis with Jupyter notebooks that support the manuscript Needham et al 2025 “Canopy Gradients of Respiration Drive Plant Carbon Budgets and Leaf Area Index.” We add functionality to the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) to allow flexible vertical gradients of leaf maintenance respiration (Rdark) and maximum carboxylation rate (Vcmax) through the canopy. We test the sensitivity of FATES to canopy gradients in Rdark, both in global simulations to assess broad scale impacts on leaf area index (LAI) and vegetation carbon, and in single site simulations where we assess impacts on plant functional type (PFT) competitive dynamics. Parameter files are netcdf files that can be converted to human readable .cdl files using NCO tools. Analysis scripts are Jupyter notebook files. These can be opened and run using the open source Jupyter notebook software. Model outputs are netcdf files.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Modeled and Measured Ecosystem Respiration in Maize-Soybean Systems Over 10 Years

Crop residue is an abundant resource for the potential production of biofuels, but a better understanding of its use on net carbon emissions must be developed to mitigate climate change. This analysis combines two established crop growth models (Hybrid-Maize and Soysim) with a simple soil and crop residue respiration model to estimate daily ecosystem respiration (ERe) from maize and soybean; ERe was estimated to be the sum of CO 2 emissions from the oxidation of the growing crop, crop residue, and soil organic carbon (SOC). Model-estimated CO 2 fluxes from irrigated continuous maize and irrigated maize–soybean cropping systems in eastern Nebraska were compared with tower eddy covariance measurements of CO 2 fluxes from 2001 to 2010 from those fields. Modeled C emissions closely estimated measured seasonal patterns of CO 2 dynamics and measured daily ERe ( R 2 : 0.87, 0.84). Measured and modeled annual ERe values were also compared and better agreement was found in maize compared to soybean. As there are limited comparisons of modeled soil emissions with eddy covariance measured CO 2 fluxes, this study is important for the validation of these types of models and to support their potential use in quantifying emissions from crop residue for biofuels.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Respirators: APR Issuer Self Study 33461

Respirators: APR Issuer Self-Study (course 33461) is designed to introduce and familiarize employees selected as air-purifying respirator (APR) issuers at Los Alamos National Laboratory (LANL) with the responsibilities, limitations, procedures, and resources for issuing APRs at LANL. The goal is to enable these issuers to consistently provide proper, functioning APRs to authorized users

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2017

Respirators: Air Purifying, Self-Study, Course 40723

Respirators: Air Purifying Self-Study (COURSE 40723) is designed for Los Alamos National Laboratory (LANL) workers, support services subcontractors, and other LANL subcontractors who work under the LANL Respiratory Protection Program (RPP). This course also meets the air-purifying respirators (APRs) retraining requirement.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2018

Respirator Decision Flow Chartfor NA-84 Radiological Emergency Response Operations

This document is intended to provide a simple logic flow chart to assist NNSA NA-84 First Response Teams (RAP, CM, ARG, JTOT) in making quick field respiratory protection decisions for airborne radioactive contamination based primarily on loose surface contamination measurements in the first few hours or days following a radiological release. As a rule of thumb, respirators would not be required in the early phase of emergency response activities unless an alpha/beta contamination monitoring probe reads “off scale”. A defined set of assumptions and a clear basis for these assumptions can allow a simple logic flow chart for use by a radiological emergency response team with defined measurement instrumentation and known efficiencies. This document is intended for the radiological emergency field responder. A training level of NNSA Radiation Worker 2 with Air Purification Respirator (APR) training is assumed.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2020

Analysis of Air-Purifying Respirator (APR) Cartridge Performance Testing on Hanford Tanks SX-101 and SX-104: Volume 2 - Raw Analytical Data

As the Tank Operations Contractor for U.S. Department of Energy operations at the Hanford site in Washington State, Washington River Protection Solutions (WRPS) is responsible for managing highly radioactive wastes stored in tanks at Hanford. To protect workers at Hanford Tank Farms, WRPS tests air-purifying respirator (APR) and powered air-purifying respirator (PAPR) chemical cartridges commonly used at the tank farms. The tests were conducted to determine the period of time the cartridges would provide adequate performance for APRs and PAPRs when workers are exposed to a mixture of Chemicals of Potential Concern (COPC) from any vapors exiting headspaces in the storage tanks. Occupational Safety and Health Administration (OSHA) Standard 29 Code of the Federal Regulations (CFR) 1910.134(d)(3)(iii)(b)(2) specifies that for protection against gases and vapors, employers shall implement a schedule for cartridges to ensure that change-outs occur before the end of service life. The change schedule can be based on objective information or data that ensures cartridge change-outs occur before the end of their service life. The primary function of the WRPS Cartridge Test Program is to obtain objective data to determine service lives for the APR and PAPR cartridges used at Hanford Tank Farms. WRPS contracted with Pacific Northwest National Laboratory to analyze the test data and offer an independent analysis and any recommendations. This report summarizes data analysis of APR cartridge testing on headspace vapors from Hanford SX-101 and SX-104 single-shell tanks. Volume 1 of this report documents the testing, data analysis, results, conclusions, and recommendations resulting from the APR testing on SX-101 and SX-104 headspace vapors. Volume 2 provides an introduction to the raw data, including analytical laboratory analysis results that supported the analysis and conclusions documented in Volume 1.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2020

Analysis of Powered Air-Purifying Respirator (PAPR) Cartridge Performance Testing on Hanford Tanks SX-101 and SX-104: Volume 2 Raw Analytical Data

As the Tank Operations Contractor for U.S. Department of Energy operations at the Hanford site in Washington State, Washington River Protection Solutions (WRPS) is responsible for managing highly radioactive wastes stored in tanks at Hanford. WRPS tests of cartridges used in air-purifying respirators (APR) and powered air-purifying respirators (PAPR) commonly used at Hanford Tank Farms. The tests are conducted to determine the period of time the cartridges would provide adequate performance for APRs and PAPRs used to protect workers when exposed to a mixture of Chemicals of Potential Concern (COPC) from any vapors exiting headspaces in the storage tanks. Occupational Safety and Health Administration (OSHA) Standard 29 Code of the Federal Regulations (CFR) 1910.134(d)(3)(iii)(b)(2) specifies that for protection against gases and vapors, employers shall implement a schedule for cartridges to ensure that change-outs occur before the end of service life. The change schedule can be based on objective information or data that ensures cartridge change-outs occur before the end of their service life. The primary function of the WRPS Cartridge Test Program is to obtain objective data to determine service lives for the APR and PAPR cartridges used at Hanford Tank Farms. WRPS contracted with Pacific Northwest National Laboratory to analyze the test data and offer an independent analysis and any recommendations. This report summarizes data analysis of PAPR cartridge testing on headspace vapors from Hanford SX-101 and SX-104 single-shell tanks. Two different PAPR cartridges—one from MSA Safety Inc. (Pittsburgh, Pennsylvania) and another from 3M (Maplewood, Minnesota)—were assessed on each tank headspace source on separate days. These data represent the first PAPR cartridge testing under the recent WRPS program, as testing to date had been focused on APR cartridges. Volume 1 of this report documents the testing, data analysis, results, conclusions, and recommendations resulting from the PAPR testing on SX-101 and SX-104 headspace vapors. Volume 2 provides an introduction to the raw data, including analytical laboratory analysis results that supported the analysis and conclusions documented in Volume 1.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗