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At least 235 records · Page 13

Kernel PLS-SVC for Linear and Nonlinear Discrimination

A new methodology for discrimination is proposed. This is based on kernel orthonormalized partial least squares (PLS) dimensionality reduction of the original data space followed by support vector machines for classification. Close connection of orthonormalized PLS and Fisher's approach to linear discrimination or equivalently with canonical correlation analysis is described. This gives preference to use orthonormalized PLS over principal component analysis. Good behavior of the proposed method is demonstrated on 13 different benchmark data sets and on the real world problem of the classification finger movement periods versus non-movement periods based on electroencephalogram.

Rosipal, Roman↗

Bridgeport Urban Development: Leveraging NASA Earth Observations and Sociodemographic Data to Assess Urban Heat Vulnerability and Inform Cool Corridors in Bridgeport, Connecticut

Urban environments face hotter temperatures than suburban and rural areas due to higher concentrations of impervious surfaces, heat-retaining buildings, and lack of green space. Bridgeport, Connecticut, which was formerly a national manufacturing hub, is now the densest and most populous city in the state. Bridgeport experiences hotter temperatures, exposing its residents to more extreme temperatures than the surrounding affluent suburbs. Extreme heat affects the health of those exposed to it and intensifies energy demands. Understanding temperature differences is the first step in effectively directing mitigation efforts. Our partner, Groundwork Bridgeport, along with the Yale Urban Design Workshop, are planning a “cool corridors” project, implementing cooling infrastructure to combat urban heat. We used Landsat 8 Thermal Infrared Sensor and Landsat 9 Thermal Infrared Sensor-2 data to conduct a Land Surface Temperature analysis in Google Earth Engine for the county of Fairfield. A Principal Component Analysis was performed to identify indicators of social vulnerability in Bridgeport. We used the SOlar and LongWave Environmental Irradiance Geometry model to identify felt heat on the block level to inform where the partner should locate their cooling interventions to ensure they are most effective and equitable. We focused on the East Side of Bridgeport, which we found was 10 degrees hotter than other areas of Bridgeport and the neighboring town of Fairfield. We integrated our findings using Earth observations and additional sociodemographic and climate data into final communication products for our partners which will facilitate their selection of candidate locations for their Cool Corridors project.

Silas Kirsch↗

The luminosity structure and objective classification of galaxies

The luminosity structure of spiral galaxies is studied using the technique of principal component analysis. It is found that approximately 94% of the variation in the luminosity distribution of galaxies can be accounted for by just two principal components. The principal luminosity components may contain valuable information about star formation history or whatever luminosity-regulating process occurs in galaxies. Practically, these principal components provide a new approach for the investigation of the luminosity structures of galaxies and their dependence on other properties. They also serve as an excellent objective classification system for galaxies. We introduce in this paper such a classification scheme and explore its various properties. The new system shows a number of very impressive characteristics. Most important, it can well segregate virtually all the important galactic properties we tested and does so much better than the conventional morphological classification systems. Of particular interest is that some distance-dependent parameters can also be determined to a surprisingly good accuracy; for example, absolute magnitude may be determined to an accuracy of approximately 0.6 mag (yet further improvement is believed to be highly possible). Second, the system is objective, and the classification procedure can be automated to a large degree; also the new system can apply to much smaller and fainter images than do eye-based clasification systems. These properties make the new system suitable for practical application, especially on very large (and deeper) digital image catalogs. Third, the classification is expressed in dimensionless numbers, yet the simple notation bears significant and easily understandable meaning, making it easy and convenient to use. Finally, the new system has another extremely useful feature: it provides a very powerful and convenient platform not only for classification, but also for easily recording, examining, and studying the variations and correlations of galaxy properties-all these may be carried out graphically by using the C-vectors and the C-diagrams introduced in the paper. We wil also give an example to demonstrate the use of the classification system for the study of the internal extinction problem in spiral galaxies.

Han, Mingshen↗

The intermediate line region of QSOs

Our recent statistical investigations of broad UV lines of luminous quasars (QSOs) suggest that the traditional broadline region (BLR) consists of two components-one of width approximately 2000 km/s FWHM with the peak within a few hundred kilometers per second of the systemic redshift, and another very broad component of width greater than or equal to 7000 km/s FWHM and blueshifted by greater than or equal to 1000 km/s. Differences in the relative strengths of these components account for much of the diversity of broad-line profiles, as well as relations among line strength, line width, asymmetry, and peak blueshift. We have suggested that the narrower component arises in a distinct intermediate-line region (ILR) that is an inner extension of the narrow-line region (NLR). We form spectra of the ILR and very broad line region (VBLR) in two complementary ways. First, using a small sample of high-quality spectra, we difference two composite spectra, one with FWHM (sub C IV) approximately 3000 km/s, the other with FWHM (sub C IV) approximately 7000 km/s (essentially a VBLR spectrum)-revealing a narrower line spectrum with FWHM approximately 2000 km/s. Second, we use a principal component analysis of 200 low signal-to-noise ratio spectra from the Large Bright Quasar Survey. The ILR is identified with the first principal component-that component accounting for most of the spectrum-to-spectrum variation. The VBLR spectrum is derived by subtracting this ILR from the mean spectrum. The two methods yield similar results, and the spectra of the ILR and VBLR are very different. Additional support for the existence of two component is the lack of a correlation between the equivalent widths of the ILR and VBLR. We discuss the relationships between the VBLR, the ILR, and the traditional NLR. The ILR line intensity ratios are distinctly different from those of the VBLR, with (relative to C IV lambda 1549) stronger Lyman alpha and weaker N v lambda 1240, lambda 1400 feature, He II lambda 1640, O III lambda 1663, and Al III lambda 1860. Comparison with other active galactic nuclei (AGN) emission-line regions shows that the ILR spectrum tends to be intermediate between that of the VBLR and that of gas more distant from the ionizing continuum, such as the NLR and extended Lyman alpha nebulosity. Comparison of the spectra with results from photoionization models suggests that, compared with the VBLR, the ILR is about 10 times more distant from the ionizing continuum (approximately 1 pc), 100 to 1000 times less dense (10(exp 10)/cu cm), and has a smaller covering factor (less than or approximately 3%, compared with approximately 24% for the VBLR).

Brotherton, M. S.↗

Comparison of machine learning techniques to optimize the analysis of plutonium surrogate material via a portable LIBS device

The utilization of machine learning techniques has become commonplace in the analysis of optical emission spectra. These methods are often limited to variants of principal components analysis (PCA), partial-least squares (PLS), and artificial neural networks (ANNs). A plethora of other techniques exist and are well established in the world of data science, yet are seldom investigated for their use in spectroscopic problems. In this study, machine learning techniques were used to analyze optical emission spectra of laser-induced plasma from ceria pellets doped with silicon in order to predict silicon content. Additionally, a boosted regression ensemble model was created, and its predictive accuracy was compared to that of traditional PCA, PLS, and ANN regression models. Boosted regression tree ensembles yielded fits with R-squared (R2) values as high as 0.964 and mean-squared errors of prediction (MSEPs) as low as 0.074, providing the most accurate predictive model. Neural networks performed with slightly lower R2 values and higher MSEPs compared to the ensemble methods, thus indicating susceptibility to overfitting.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Principal Components as a Data Reduction and Noise Reduction Technique

The potential of principal components as a pipeline data reduction technique for thematic mapper data was assessed and principal components analysis and its transformation as a noise reduction technique was examined. Two primary factors were considered: (1) how might data reduction and noise reduction using the principal components transformation affect the extraction of accurate spectral classifications; and (2) what are the real savings in terms of computer processing and storage costs of using reduced data over the full 7-band TM complement. An area in central Pennsylvania was chosen for a study area. The image data for the project were collected using the Earth Resources Laboratory's thematic mapper simulator (TMS) instrument.

Imhoff, M. L.↗

Global variability of precipitation according to the Tropical Rainfall Measuring Mission

Numerous studies have documented the effect of El Nino-Southern Oscillation (ENSO) on rainfall in many regions of the globe. The question of whether ENSO is the single most important factor in interannual rainfall variability has received less attention, mostly because the kind of data that would be required to make such an assessment were simply not available. Until 1979 the evidence linking El Nino with changes in rainfall around the world came from rain gauges measuring precipitation over land masses and a handful of islands. From 1980 until the launch of the Tropical Rainfall Measuring Mission (TRMM) in November 1997 the remote sensing evidence was confined to ocean rainfall because of the very poor sensitivity of the instruments over land. In this paper we summarize the results of a principal component analysis of TRMM's 60-month (January 1998 to December 2002) global land and ocean remote-sensing record of monthly rainfall accumulations. Contrary to the first principal component of the rainfall itself, the first three indices of the anomaly are most sensitive to precipitation over the ocean rather than over the land. With the help of archived surface station data the first TRMM rain anomaly index is extended back several decades. Comparison of the extended index with the Southern Oscillation Index confirms that the first principal component of the rainfall anomaly is strongly correlated with the ENSO indices.

rainfall↗

Representation of Probability Density Functions from Orbit Determination using the Particle Filter

Statistical orbit determination enables us to obtain estimates of the state and the statistical information of its region of uncertainty. In order to obtain an accurate representation of the probability density function (PDF) that incorporates higher order statistical information, we propose the use of nonlinear estimation methods such as the Particle Filter. The Particle Filter (PF) is capable of providing a PDF representation of the state estimates whose accuracy is dependent on the number of particles or samples used. For this method to be applicable to real case scenarios, we need a way of accurately representing the PDF in a compressed manner with little information loss. Hence we propose using the Independent Component Analysis (ICA) as a non-Gaussian dimensional reduction method that is capable of maintaining higher order statistical information obtained using the PF. Methods such as the Principal Component Analysis (PCA) are based on utilizing up to second order statistics, hence will not suffice in maintaining maximum information content. Both the PCA and the ICA are applied to two scenarios that involve a highly eccentric orbit with a lower apriori uncertainty covariance and a less eccentric orbit with a higher a priori uncertainty covariance, to illustrate the capability of the ICA in relation to the PCA.

Mashiku, Alinda K.↗

Identification and correction of temporal and spatial distortions in scanning transmission electron microscopy

Scanning transmission electron microscopy (STEM) has become the technique of choice for quantitative characterization of atomic structure of materials, where the minute displacements of atomic columns from high-symmetry positions can be used to map strain, polarization, octahedra tilts, and other physical and chemical order parameter fields. The latter can be used as inputs into mesoscopic and atomistic models, providing insight into the correlative relationships and generative physics of materials on the atomic level. However, these quantitative applications of STEM necessitate understanding the microscope induced image distortions and developing the pathways to compensate them both as part of a rapid calibration procedure for in situ imaging, and the post-experimental data analysis stage. Here, we explore the spatiotemporal structure of the microscopic distortions in STEM using multivariate analysis of the atomic trajectories in the image stacks. Based on the behavior of principal component analysis (PCA), we develop the Gaussian process (GP)-based regression method for quantification of the distortion function. The limitations of such an approach and possible strategies for implementation as a part of in-line data acquisition in STEM are discussed. Here, the analysis workflow is summarized in a Jupyter notebook that can be used to retrace the analysis and analyze the reader's data.

36 MATERIALS SCIENCE↗

Using Machine Learning for Timely Estimates of Ocean Color Information From Hyperspectral Satellite Measurements in the Presence of Clouds, Aerosols, and Sunglint

Retrievals of ocean color from space are important for better understanding of the ocean ecosystem but can be limited under conditions such as clouds, aerosols, and sunglint. Many ocean color algorithms use a few selected spectral bands to perform an atmospheric correction and then derive the upwelling radiance from the ocean. The limitations in the atmospheric correction under certain conditions lead to many gaps in daily spatial coverage of ocean color retrievals. To address these limitations, we introduce a new approach that uses machine learning to estimate ocean color from top of atmosphere radiances or reflectance measurements. In this approach, a principal component analysis is used to decompose the hyperspectral measurements into spectral features that describe the scattering and absorption of the atmosphere and the underlying surface. The coefficients of the principal components are then used to train a neural network to predict ocean color properties derived from the MODIS atmospheric correction algorithm. This machine learning approach is independent of a priori information and does not rely on any radiative transfer modeling. We apply the approach to two hyperspectral UV/VIS instruments, the ozone monitoring instrument (OMI) and the TROPOspheric Monitoring Instrument (TROPOMI), using measurements from 320–500 nm to show that it can be used to reproduce ocean color properties in less-than-ideal conditions. This machine learning approach complements the current atmospheric correction ocean color retrievals by filling in the gaps resulting from cloud, aerosol, and sunglint contamination. This method can be applied to the future hyperspectral Ocean Color Instrument (OCI), which will be onboard NASA’s Plankton, Aerosol Cloud, ocean Ecosystem (PACE) ocean color satellite set to launch in 2024.

Ocean color↗

Clustering High-dimensional Toxicogenomics Data with Rare Signals

Toxicogenomics studies the gene and protein activities to drug treatments or toxic exposures. As the drugs and genes are numerous, toxicogenomics data are naturally high dimensional, with dimension sizes up to millions. In addition, the distribution of toxicogenomics data is oftentimes skewed, and they contain rare but important signals representing a cell or organism’s response to toxicity. The combination of high dimension and extremely skewed distribution of toxicogenomics data makes clustering analysis extremely challenging.We present our study of clustering toxicogenomics data using classical approaches such as principal component analysis as well as deep learning approaches such as auto-encoders. Our experiments show that these approaches fail to preserve rare signals and produce high-quality clusters. We then explore augmenting matrix factorization with deep learning techniques such as attention mechanism to produce latent representations for clustering. Our technique is able to better preserve rare signals after dimensionality reduction than prior approaches. Furthermore, we combine our augmented matrix factorization with a mechanism similar to autoencoder to balance separable clusters and low regeneration errors. Our experiments demonstrate better clustering with our proposed approach.

Cong, Guojing↗

Preliminary Comparisons of the Information Content and Utility of TM Versus MSS Data

Some preliminary indications were provided as to the relative merits of actual TM data versus MSS data for land cover mapping related applications. Three analyses were designed which had sensitivity to the differences in spectral, spatial and radiometric parameters between the TM and MSS. In the water body analysis, a primarily spatially related test, the detectability of small uniform targets was examined. The principal components analysis, an examination of the inherent dimensionality of the data, was more spectrally and radiometrically related. The spectral clustering analysis, also heavily spectrally and radiometrically influenced, provided information on the types of targets separable on TM versus MSS data. These analyses were to be conducted with simultaneously collected LANDSAT-4 complete TM (7 band) and MSS (4 band) data. In actuality, 4-band TM data, and archived LANDSAT-2 MSS data of the same area were used.

Markham, B. L.↗

Pattern recognition of clouds and ice in polar regions

The study is based on AVHRR imagery and results from Landsat high-spatial-resolution scenes. Among the textual features investigated are the gray level difference vector (GLDV), and sum and difference histogram (SADH) approaches as well as gray level run length, spatial-coherence, and spectral-histogram measures. The traditional stepwise discriminant analysis and neural-network analysis are used for the identification of 20 Arctic surface and cloud classes. A principal-component analysis and hybrid architecture employing a modularized competitive learning layer are utilized. It is pointed out that the cloud-classification accuracy comparable to that of back-propagation could be achieved with a training time two orders of magnitude faster.

Welch, R. M.↗

A Principal Component and Machine Learning Approach to Spatially Gap Fill Hyperspectral Ocean Color Satellite Retrievals

Retrievals of ocean color properties from space are important for monitoring the health of the ocean ecosystem but such retrievals tend to be limited in spatial coverage due to conditions such as clouds, aerosols, and sun glint. Gap filling of ocean color retrievals is typically performed by combining retrievals from multiple satellites or temporally averaging multiple days of retrievals but despite these techniques large gaps still exist posing challenges for near real time monitoring of events like harmful algae blooms. To address these limitations, we propose a spatial gap filling approach using machine learning to learn how to perform an atmospheric correction under challenging retrieval conditions. In this approach a principal component analysis is used to decompose the hyperspectral measurements into spectral features that describe the scattering and absorption of the atmosphere as well as the underlying surface. The coefficients of the principal components are then used to train a neural network to predict ocean color properties derived from a standard ocean color algorithm such as the MODIS atmospheric correction algorithm. This machine learning approach is independent of a priori information and does not rely on any radiative transfer modeling. We apply the approach to two hyperspectral UV/VIS instruments, the Ozone Monitoring Instrument (OMI) and TROPOspheric Monitoring Instrument (TROPOMI) to show that it can be used to estimate ocean color properties such as chlorophyll, remote sensing reflectance, and fluorescence line height. This method could be used as a gap-filling technique for the future Ocean Color Instrument (OCI) which will be onboard NASA's Plankton, Aerosol Cloud, ocean Ecosystem (PACE) ocean color satellite to provide additional information for monitoring the health of our global oceans. Additionally, it could be applied to the geostationary satellite Tropospheric Emissions: Monitoring of Pollution (TEMPO) to better understand diurnal variability in ocean ecology.

MODIS atmospheric correction algorithm↗

A bi-level data-driven framework for fault-detection and diagnosis of HVAC systems

Long-term operation of heating, ventilation, and air conditioning (HVAC) systems will eventually lead to a range of HVAC system failures, resulting in excessive energy consumption and maintenance costs. Here, to avoid HVAC malfunctioning, fault detection diagnostic (FDD) is utilized as a common practice. Machine learning methods have lately received considerable interest for FDD analysis of HVAC systems due to their high detection accuracy. Meanwhile, HVAC malfunctions are regarded as rare occurrences, hence normal operating data samples are much more accessible than data samples in faulty and malfunctioning conditions. The dominating frequency of normal operation in HVAC datasets has also led to heavily biased classification algorithms within the literature. Moreover, the focus of previous literature has been on increasing the accuracy of the models which leads to a high number of false positives (misleading alarms) in the system. In order to enhance the performance of diagnostic procedures and fill the mentioned gaps, this study proposes a novel data-driven framework. A bi-level machine learning framework is developed for diagnosing faults in air handling units (AHUs) and rooftop units (RTUs) based on principal component analysis (PCA), time series anomaly detection, and random forest (RF). It is shown that PCA can reduce the dataset dimension with one principal component accounting for 95% of data variance. Also, the random forest could classify the faults with 89% precision for single-zone AHU, 85% precision for RTU, and 79% for multi-zone AHU. By proposing this framework, three persistent challenges are addressed: (I) minimizing false positives; (II) accounting for data imbalance; and (III) normal condition monitoring of equipment.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DEEPEN Global Standardized Categorical Exploration Datasets for Magmatic Plays

DEEPEN stands for DE-risking Exploration of geothermal Plays in magmatic ENvironments. As part of the development of the DEEPEN 3D play fairway analysis (PFA) methodology for magmatic plays (conventional hydrothermal, superhot EGS, and supercritical), weights needed to be developed for use in the weighted sum of the different favorability index models produced from geoscientific exploration datasets. This was done using two different approaches: one based on expert opinions, and one based on statistical learning. This GDR submission includes the datasets used to produce the statistical learning-based weights. While expert opinions allow us to include more nuanced information in the weights, expert opinions are subject to human bias. Data-centric or statistical approaches help to overcome these potential human biases by focusing on and drawing conclusions from the data alone. The drawback is that, to apply these types of approaches, a dataset is needed. Therefore, we attempted to build comprehensive standardized datasets mapping anomalies in each exploration dataset to each component of each play. This data was gathered through a literature review focused on magmatic hydrothermal plays along with well-characterized areas where superhot or supercritical conditions are thought to exist. Datasets were assembled for all three play types, but the hydrothermal dataset is the least complete due to its relatively low priority. For each known or assumed resource, the dataset states what anomaly in each exploration dataset is associated with each component of the system. The data is only a semi-quantitative, where values are either high, medium, or low, relative to background levels. In addition, the dataset has significant gaps, as not every possible exploration dataset has been collected and analyzed at every known or suspected geothermal resource area, in the context of all possible play types. The following training sites were used to assemble this dataset: - Conventional magmatic hydrothermal: Akutan (from AK PFA), Oregon Cascades PFA, Glass Buttes OR, Mauna Kea (from HI PFA), Lanai (from HI PFA), Mt St Helens Shear Zone (from WA PFA), Wind River Valley (From WA PFA), Mount Baker (from WA PFA). - Superhot EGS: Newberry (EGS demonstration project), Coso (EGS demonstration project), Geysers (EGS demonstration project), Eastern Snake River Plain (EGS demonstration project), Utah FORGE, Larderello, Kakkonda, Taupo Volcanic Zone, Acoculco, Krafla. - Supercritical: Coso, Geysers, Salton Sea, Larderello, Los Humeros, Taupo Volcanic Zone, Krafla, Reyjanes, Hengill. **Disclaimer: Treat the supercritical fluid anomalies with skepticism. They are based on assumptions due to the general lack of confirmed supercritical fluid encounters and samples at the sites included in this dataset, at the time of assembling the dataset. The main assumption was that the supercritical fluid in a given geothermal system has shared properties with the hydrothermal fluid, which may not be the case in reality. Once the datasets were assembled, principal component analysis (PCA) was applied to each. PCA is an unsupervised statistical learning technique, meaning that labels are not required on the data, that summarized the directions of variance in the data. This approach was chosen because our labels are not certain, i.e., we do not know with 100% confidence that superhot resources exist at all the assumed positive areas. We also do not have data for any known non-geothermal areas, meaning that it would be challenging to apply a supervised learning technique. In order to generate weights from the PCA, an analysis of the PCA loading values was conducted. PCA loading values represent how much a feature is contributing to each principal component, and therefore the overall variance in the data.

15 GEOTHERMAL ENERGY↗

Automated Analysis, Classification, and Display of Waveforms

A computer program partly automates the analysis, classification, and display of waveforms represented by digital samples. In the original application for which the program was developed, the raw waveform data to be analyzed by the program are acquired from space-shuttle auxiliary power units (APUs) at a sampling rate of 100 Hz. The program could also be modified for application to other waveforms -- for example, electrocardiograms. The program begins by performing principal-component analysis (PCA) of 50 normal-mode APU waveforms. Each waveform is segmented. A covariance matrix is formed by use of the segmented waveforms. Three eigenvectors corresponding to three principal components are calculated. To generate features, each waveform is then projected onto the eigenvectors. These features are displayed on a three-dimensional diagram, facilitating the visualization of the trend of APU operations.

Kwan, Chiman↗

Towards multi-fidelity deep learning of wind turbine wakes

We report engineering wake models that accurately predict wake in a computationally efficient manner are very important for tasks such as layout optimization and control of wind farms. In this paper, we explore an application of deep learning (DL) to learn the wake model from hierarchies of physics-based approaches ranging from analytical models to an approximate form of the Reynolds-averaged Navier-Stokes equations. We first illustrate the application of principal component analysis to obtain a lower-dimensional representation that allows a computationally tractable training and deployment of DL models. Then, the DL model is trained to learn the mapping from input parameter space to the principal components, which are then used to reconstruct the three-dimensional flow field. Additionally, we investigate a composite framework consisting of two neural networks to learn the correlation between low- and high-fidelity data with Gauss and curl models treated as proxies for low- and high-fidelity models, respectively. The prediction from both DL models matches well with the high-fidelity data with a maximum relative percentage error for the kinetic energy flux of <1%. This work opens up possibilities for data-efficient construction of surrogate models for wake prediction that can be used to study the influence of wind speed and yaw angles on wind farm power production.

17 WIND ENERGY↗