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At least 235 records · Page 13

Material Effects on Electron-Capture Decay in Cryogenic Sensors

Several current searches for physics beyond the standard model are based on measuring the electron-capture (EC) decay of radionuclides implanted into cryogenic high-resolution sensors. The sensitivity of these experiments has already reached the level where systematic effects related to atomic state energy changes from the host material are a limiting factor. One example is a neutrino mass study based on the nuclear EC decay of 7 Be to 7 Li inside cryogenic Ta-based sensors. Here, to understand the material effects at the required level, we use density-functional theory to model the electronic structure of lithium atoms in different atomic environments of the polycrystalline Ta absorber film. The calculations reveal that the Li 1s binding energies can vary by more than 2 eV due to insertion at different lattice sites, at grain boundaries, in disordered Ta, and in the vicinity of various impurities. However, the total range of Li 1s shifts does not exceed 4 eV, even for extreme amorphous disorder. Furthermore, when investigating the effects on the Li 2s levels, we find broadening of more than 5 eV due to hybridization with the Ta band structure. Material effects are shown to contribute significantly to peak broadening in Ta-based sensors that are used to search for physics beyond the standard model in the EC decay of 7 Be, but they do not explain the full extent of observed broadening. Understanding these in-medium effects will be required for current- and future-generation experiments that observe low-energy radiation from the EC decay of implanted isotopes to evaluate potential limitations on the measurement sensitivity.

36 MATERIALS SCIENCE↗

Molecular basis for the distinct cellular functions of the Lsm1–7 and Lsm2–8 complexes

Eukaryotes possess eight highly conserved Lsm (like Sm) proteins that assemble into circular, heteroheptameric complexes, bind RNA, and direct a diverse range of biological processes. Among the many essential functions of Lsm proteins, the cytoplasmic Lsm1–7 complex initiates mRNA decay, while the nuclear Lsm2–8 complex acts as a chaperone for U6 spliceosomal RNA. It has been unclear how these complexes perform their distinct functions while differing by only one out of seven subunits. Here, we elucidate the molecular basis for Lsm-RNA recognition and present four high-resolution structures of Lsm complexes bound to RNAs. The structures of Lsm2–8 bound to RNA identify the unique 2',3' cyclic phosphate end of U6 as a prime determinant of specificity. In contrast, the Lsm1–7 complex strongly discriminates against cyclic phosphates and tightly binds to oligouridylate tracts with terminal purines. Lsm5 uniquely recognizes purine bases, explaining its divergent sequence relative to other Lsm subunits. Lsm1–7 loads onto RNA from the 3' end and removal of the Lsm1 carboxy-terminal region allows Lsm1–7 to scan along RNA, suggesting a gated mechanism for accessing internal binding sites. These data reveal the molecular basis for RNA binding by Lsm proteins, a fundamental step in the formation of molecular assemblies that are central to eukaryotic mRNA metabolism.

59 BASIC BIOLOGICAL SCIENCES↗

Molecular mechanism of phosphopeptide neoantigen immunogenicity

Abstract often leads to surface presentation of phosphopeptide neoantigens. However, their role in cancer immunogenicity remains unclear. Here we describe a mechanism by which an HLA-B*0702-specific acute myeloid leukemia phosphoneoantigen, pMLL 747–755 (EPR(pS)PSHSM), is recognized by a cognate T cell receptor named TCR27, a candidate for cancer immunotherapy. We show that the replacement of phosphoserine P 4 with serine or phosphomimetics does not affect pMHC conformation or peptide-MHC affinity but abrogates TCR27-dependent T cell activation and weakens binding between TCR27 and pMHC. Here we describe the crystal structures for TCR27 and cognate pMHC, map of the interface produced by nuclear magnetic resonance, and a ternary complex generated using information-driven protein docking. Our data show that non-covalent interactions between the epitope phosphate group and TCR27 are crucial for TCR specificity. This study supports development of new treatment options for cancer patients through target expansion and TCR optimization.

59 BASIC BIOLOGICAL SCIENCES↗

Nucleon-nucleon potentials from Δ-full chiral effective-field-theory and implications

We closely investigate NN potentials based upon the Δ-full version of chiral effective-field-theory. We find that recently constructed NN potentials of this kind, which (when applied together with three-nucleon forces) were presented as predicting accurate binding energies and radii for a range of nuclei from A = 16 to A = 132 and providing accurate equations of state for nuclear matter, yield a χ 2 /datum of 60 for the reproduction of the pp data below 100 MeV laboratory energy. This χ 2 is more than three times what the Hamada-Johnston potential of the year of 1962 achieved already some 60 years ago. We perceive this historical fact as concerning in view of the current emphasis on precision. We are able to trace the very large χ 2 as well as the apparent success of the potentials in nuclear structure to unrealistic predictions for P-wave states, in which the Δ-full next-to-next-to-leading order (NNLO) potentials are off by up to 40 times the NNLO truncation errors. In fact, we show that the worse the description of the P-wave states, the better the predictions in nuclear structure. Thus, these potentials cannot be seen as the solution to the outstanding problems in current microscopic nuclear structure physics.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Measuring the Neutron Spin Asymmetry A1n in the Valence Quark Region in Hall C at Jefferson Lab

The quest to understand how the nucleon spin is decomposed into its constituent quark and gluon spin and orbital angular momentum (OAM) components has been at the forefront of nuclear physics for decades. Due to the non-perturbative nature of Quantum Chromodynamics (QCD) - the theory describing how quarks and gluons bind together to form protons and neutrons - making absolute predictions of nucleon spin structure is generally difficult, especially as a function of its quark and gluon longitudinal momentum fraction x. Measurements involving nucleon spin structure serve as a sensitive test for QCD, including ab-initio lattice QCD calculations due to the advent of the quasi-PDF formalism, and various predictions that diverge at large-x. The neutron spin asymmetry An 1 at high?x is a key observable for probing nucleon spin structure. In the valence domain (x > 0.5), sea effects are expected to be negligible, and so the total nucleon spin is considered to be carried by the valence quarks. The valence region can therefore enable us to study the role of quark OAM and other non-perturbative effects of the strong force. An 1 was measured in the deep inelastic scattering region of 0.40 < x < 0.75 and 6 < Q2 < 10 GeV2 in Hall C at Jefferson Lab using a 10.4 GeV longitudinally polarized electron beam, upgraded polarized 3He target, and the High Momentum Spectrometer (HMS) and Super High Momentum Spectrometer (SHMS). E12- 06-110 provides the first precision data in the valence quark region above x = 0.60, and its preliminary results proved consistent with earlier data disqualifying a pQCD model that excluded quark OAM. Combined with previous world proton data, the ratio of the polarized-to-unpolarized up quark momentum distribution (?u + ?u)/(u + u) remained positive at large-x, and the down quark (?d + ?d)/(d + d) remained negative.

Rehfuss, Melanie↗

Strange Mesons and Gluonic Excitations

In the standard model of particle physics, the interactions between the fundamental constituents of nuclear matter, quarks and gluons, are governed by the theory of Quantum Chromodynamics (QCD). A central goal of nuclear physics is to understand how hadrons, such as protons and neutrons, are formed from these underlying quark and gluon degrees of freedom. A hadron is primarily constructed from three quarks or a quark-antiquark pair; however, the theory of QCD allows for much more exotic configurations. One of the predicted exotic configurations is known as a hybrid meson, which contains an excited gluonic field in addition to the usual quark-antiquark pair. This project aims to search for and study these gluonic excitations using the Gluonic Excitation (GlueX) experiment at Jefferson Lab in Newport News, VA. The discovery potential of the experiment will be significantly extended by studying the quark flavor composition of the meson spectrum through the completion and use of an enhanced detector to identify mesons containing strange quarks. The unprecedented statistical precision of the data collected at GlueX will allow us to search for a pattern of light-quark hybrid mesons, providing new insight into the interactions that bind the fundamental quarks and gluons into the hadrons we observe in nature.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Development of Porous Crystalline Materials for Selective Binding of O 2 from Air

Porous materials that take advantage of different chemisorptive behaviors of O 2 and N 2 could be an effective alternative to approaches based on physisorption for this important separation. Recently, the tetra-nuclear cobalt complex [(Co(III) 2 (bpbp)O 2 ) 2 bdc](PF 6 ) 4 (CSD code: GAMVIB; bpbp – = 2,6-bis(N,N-bis(2-pyridylmethyl)aminomethyl)-4-tert-butylphenolato; bdc 2– = 1,4-benzenedicarboxylato) was shown to have potential for O 2 /N 2 separations based on this concept. This observation raises the question of what other known materials have similar properties. Here, we combine structure screening with a high-throughput periodic density functional theory (DFT) workflow to investigate O 2 and N 2 adsorption in materials from validated crystal structure databases (e.g., CoRE-MOF database and CSD database). These calculations identify multiple materials that have similar di-Co clusters to GAMVIB that are predicted to selectively bind O 2 over N 2 , and suggest design rules that can be used to tune the O 2 and N 2 affinities in materials of this kind.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Static and dynamic properties of atomic nuclei with high-resolution potentials

Here, we compute ground-state and dynamical properties of 4 He and 16 O nuclei using as input high-resolution, phenomenological nucleon-nucleon and three-nucleon forces that are local in coordinate space. The nuclear Schrodinger equation for both nuclei is accurately solved employing the auxiliary-field diffusion Monte Carlo approach. For the 4 He nucleus, detailed benchmarks are carried out with the hyperspherical harmonics method. In addition to presenting results for the binding energies and radii, we also analyze the momentum distributions of these nuclei and their Euclidean response function corresponding to the isoscalar density transition. The latter quantity is particularly relevant for lepton-nucleus scattering experiments, as it paves the way to quantum Monte Carlo calculations of electroweak response functions of 16 O.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Exploring Resonance Structures in the Partial-Wave Analysis of ¿p0 Photoproduction at GlueX

This thesis studies what happens when a photon (¿) collides with a proton (p) and produces a neutral omega (¿) and pion (p0) pair, with a recoiling proton (p'), expressed as ¿p ¿ ¿p0p'. We study this and other reactions to better understand the strong nuclear force; one of the four fundamental forces that govern all the physics of the universe. This force is specifically responsible for the binding and decay of subatomic particles, such as the ones here. While we understand the ¿ and p0, what we are actually interested in is a short-lived unknown particle X that decays via X ¿ ¿p0. There are a multitude of possible particles X can be, and so our focus in this work is to find out what X is by determining its properties from the particles we measure. We do this via an intricate analysis procedure known as “partial-wave analysis”. By analogy, one can think of our particle detector as a buoy, and the particles we want to analyze (X) as pebbles hitting a pond. The waves created by the pebble will move our buoy, giving us information about the pebble that produced the wave. However, when multiple pebbles hit our pond, the waves overlap and interfere with each other. Our buoy only can measure the complicated interfering result of all the waves. To disentangle this, our partial-wave analysis works by modeling this interference pattern so that we may infer the properties of the pebbles (particles) we produced. In this thesis, we review the relevant experimental history in photoproduction and related production mechanisms, as well as the theoretical foundations that motivate our measurement. We describe the methods used to collect our data at the GlueX experiment stationed at the Jefferson Lab accelerator facility in Newport News, Virginia. We then detail the selections we apply to ensure our events are almost exclusively ¿p ¿ ¿p0p'. We cover the intensity model, how we verify its capabilities, and finally present our results together with systematic studies. Our primary result is the detection of a b1(1235) meson interfering with a wide JPC = 1-- vector state, measured via a mass-independent partial-wave analysis. It provides precise experimental results that can be used as input for theoretical models of the reaction, yielding conclusions about the procedures responsible for how our universe behaves at its most basic level.

Scheuer, Kevin [College of William and Mary, Willi↗

A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA

Productive transcriptional elongation of many cellular and viral mRNAs requires transcriptional factors to extract pTEFb from the 7SK snRNP by modulating the association between HEXIM and 7SK snRNA. In HIV-1, Tat binds to 7SK by displacing HEXIM. However, without the structure of the 7SK-HEXIM complex, the constraints that must be overcome for displacement remain unknown. Furthermore, while structure details of the Tat NL4-3 -7SK complex have been elucidated, it is unclear how subtypes with more HEXIM-like Tat sequences accomplish displacement. Here we report the structures of HEXIM, Tat G , and Tat Fin arginine rich motifs in complex with the apical stemloop-1 of 7SK. While most interactions between 7SK with HEXIM and Tat are similar, critical differences exist that guide function. First, the conformational plasticity of 7SK enables the formation of three different base pair configurations at a critical remodeling site, which allows for the modulation required for HEXIM binding and its subsequent displacement by Tat. Furthermore, the specific sequence variations observed in various Tat subtypes all converge on remodeling 7SK at this region. Second, we show that HEXIM primes its own displacement by causing specific local destabilization upon binding — a feature that is then exploited by Tat to bind 7SK more efficiently.

59 BASIC BIOLOGICAL SCIENCES↗

Solvent manipulation of the pre-reduction metal–ligand complex and particle-ligand binding for controlled synthesis of Pd nanoparticles

Understanding how to control the nucleation and growth rates is crucial for designing nanoparticles with specific sizes and shapes. Herein, we show that the nucleation and growth rates are correlated with the thermodynamics of metal–ligand/solvent binding for the pre-reduction complex and the surface of the nanoparticle, respectively. To obtain these correlations, we measured the nucleation and growth rates by in situ small angle X-ray scattering during the synthesis of colloidal Pd nanoparticles in the presence of trioctylphosphine in solvents of varying coordinating ability. The results show that the nucleation rate decreased, while the growth rate increased in the following order, toluene, piperidine, 3,4-lutidine and pyridine, leading to a large increase in the final nanoparticle size (from 1.4 nm in toluene to 5.0 nm in pyridine). Using density functional theory (DFT), complemented by 31 P nuclear magnetic resonance and X-ray absorption spectroscopy, we calculated the reduction Gibbs free energies of the solvent-dependent dominant pre-reduction complex and the solvent-nanoparticle binding energy. The results indicate that lower nucleation rates originate from solvent coordination which stabilizes the pre-reduction complex and increases its reduction free energy. At the same time, DFT calculations suggest that the solvent coordination affects the effective capping of the surface where stronger binding solvents slow the nanoparticle growth by lowering the number of active sites (not already bound by trioctylphosphine). The findings represent a promising advancement towards understanding the microscopic connection between the metal–ligand thermodynamic interactions and the kinetics of nucleation and growth to control the size of colloidal metal nanoparticles.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Actinide N-Donor Thermodynamics: Expanding the f-element Covalency Dialogue. Final report

Resolving the chemistry and physics of f-electrons is one of the grand challenges of science for energy technology. A central component of this challenge is describing covalency in actinide-ligand interactions. Crystallography, x-ray spectroscopy and computational techniques have provided reasonable, and in some cases remarkable, support for covalency in actinide-ligand interactions. Courtesy the quality of the results obtained, a significant portion of the covalency dialogue has been forwarded through solid-state and computational studies of the more stable actinides (Th, U, Pu, Np). However; recent reports have questioned whether covalency in actinide interactions increases or decreases across the series. Examination of less-stable trans-actinides (Am, Cm, Bk, Cf and Es) by the aforementioned approaches can be rapidly limited due to material availability, radiological hazards and experimental data to validate computational models. Furthermore, limited thermodynamic data exists to confirm covalency in actinide solution phase interactions that are highly relevant to the remediation and reprocessing of used nuclear fuel. The best-defined interactions of actinides with soft donors in aqueous solutions involve (poly)aminopolycarboxylate (APC) ligands. The chelate effect and binding affinity with the acetic acid APCs subgroups encourages amine interactions with the actinide metal center. In the absence of these factors, amine interactions with actinides are too weak to overcome the protective hydration shell of the dissolved ion. The ability for APCs to force actinide interactions with soft nitrogen donors (as defined by Pearson’s Hard Soft Acid Base theory) encourages the application of these ligands in a variety of processes for actinide recovery from nearly chemically identical lanthanides. The ability to functionalize the amine center of the ligand in a variety of capacities (adding additional amine groups, exchanging the conventional acetate group for an acetate group, etcetera), allows for the APC ligand to serve as a thermodynamic probe for actinide-nitrogen interactions. Perhaps the single most significant breakthrough during the previous funding cycle was the observation that covalency for the transplutonium part of the actinide series can be increasingly influenced with energy degeneracy driven covalency as the actinides become heavier. This was observed most predominantly with dipicolinic acid, but extensions of f-orbital degeneracy were found to affect aliphatic aminopolycarboxylate-actinide complexes through einsteinium.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Nuclei with Up to $$\varvec{A=6}$$ Nucleons with Artificial Neural Network Wave Functions

The ground-breaking works of Weinberg have opened the way to calculations of atomic nuclei that are based on systematically improvable Hamiltonians. Solving the associated many-body Schrödinger equation involves non-trivial difficulties, due to the non-perturbative nature and strong spin-isospin dependence of nuclear interactions. Artificial neural networks have proven to be able to compactly represent the wave functions of nuclei with up to $A=4$ nucleons. In this work, we extend this approach to $^6$Li and $^6$He nuclei, using as input a leading-order pionless effective field theory Hamiltonian. We successfully benchmark their binding energies, point-nucleon densities, and radii with the highly-accurate hyperspherical harmonics method.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Measurements of Nuclear Effects and the $\bar \nu_\mu +H \to \mu^+ + n$ Cross Section in MINERνA with Neutron Tagging

MINERνA, or Main INjector ExpeRiment for ν-A, at Fermilab, is an experimentdedicated to the study of neutrino-nucleus interactions in the GeV regime. Itsgoal is to illustrate the interplay between hadronic and nuclear physics and measure intranuclear dynamics crucial for the present and future neutrino oscillationmeasurements. We first measure a set of variables sensitive to how Monte Carlo(MC) simulations of neutrino-nucleus interactions implement binding energy andthen move on to measure the antineutrino CCQE cross section on the hydrogentargets in MINERνA’s CH detector. We have developed a method to preferentially select events on the hydrogen by comparing outgoing neutrons’ directions totheoretical neutron directions assuming two-body interactions. We measured thecross section, extracted the axial form factor, and performed a Z-expansion fit. Weobserve larger values in the axial form factor at high Q2than current best fits. Finally, we show a preliminary selection of events with both protons and neutrons toinvestigate nuclear processes responsible for producing these final states.

Cai, Tejin↗

Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP

Abstract The Orange Carotenoid Protein (OCP) is a water-soluble protein that governs photoprotection in many cyanobacteria. The 35 kDa OCP is structurally and functionally modular, consisting of an N-terminal effector domain (NTD) and a C-terminal regulatory domain (CTD); a carotenoid spans the two domains. The CTD is a member of the ubiquitous Nuclear Transport Factor-2 (NTF2) superfamily (pfam02136). With the increasing availability of cyanobacterial genomes, bioinformatic analysis has revealed the existence of a new family of proteins, homologs to the CTD, the C-terminal domain-like carotenoid proteins (CCPs). Here we purify holo-CCP2 directly from cyanobacteria and establish that it natively binds canthaxanthin (CAN). We use small-angle X-ray scattering (SAXS) to characterize the structure of this carotenoprotein in two distinct oligomeric states. A single carotenoid molecule spans the two CCPs in the dimer. Our analysis with X-ray footprinting-mass spectrometry (XFMS) identifies critical residues for carotenoid binding that likely contribute to the extreme red shift (ca. 80 nm) of the absorption maximum of the carotenoid bound by the CCP2 dimer and a further 10 nm shift in the tetramer form. These data provide the first structural description of carotenoid binding by a protein consisting of only an NTF2 domain.

59 BASIC BIOLOGICAL SCIENCES↗

Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy

Solid-state nuclear magnetic resonance (ssNMR) is an indispensable tool for elucidating the structure and dynamics of insoluble and non-crystalline biomolecules. The recent advances in the sensitivity-enhancing technique magic-angle spinning dynamic nuclear polarization (MAS-DNP) have substantially expanded the territory of ssNMR investigations and enabled the detection of polymer interfaces in a cellular environment. This article highlights the emerging MAS-DNP approaches and their applications to the analysis of biomolecular composites and intact cells to determine the folding pathway and ligand binding of proteins, the structural polymorphism of low-populated biopolymers, as well as the physical interactions between carbohydrates, proteins, and lignin. Furthermore, these structural features provide an atomic-level understanding of many cellular processes, promoting the development of better biomaterials and inhibitors. It is anticipated that the capabilities of MAS-DNP in biomolecular and biomaterial research will be further enlarged by the rapid development of instrumentation and methodology.

36 MATERIALS SCIENCE↗

Adapting to a Changing World: Managing the Promise and Peril of Emerging Technologies and the Nuclear Nexus

This paper is focused on emerging technologies in three areas: outer space, cyberspace, and artificial intelligence. Technologies in each of these areas share a number of characteristics that make them a challenge for legally-binding approaches to arms control. For example, they each have significant definitional challenges. They are also dual use and within the reach of non-state actors. Verifying compliance with any legally-binding agreements in these areas poses significant challenges, at least at this time. Moreover, the rapid pace of technological change also contributes to the difficulty of crafting legally-binding arms control measures. The United States has generally championed a more normative approach to the governance of emerging technologies—the idea being that international agreement on norms serves as the basis for collective action to respond to activities that deviate from those norms.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Activation of Low-Valent, Multiply M–M Bonded Group VI Dimers toward Catalytic Olefin Metathesis via Surface Organometallic Chemistry

Olefin metathesis is a broadly employed reaction with applications that range from fine chemicals to materials and petrochemicals. The design and investigation of olefin metathesis catalysts have been ongoing for over half a century, with advancements made in terms of activity, stability, and selectivity. Immobilization of organometallic complexes onto solid supports such as silica or alumina is a promising strategy for catalyst heterogenization, often resulting in increased activity and stability. Consequently, a broad range of early transition metal catalysts bearing alkyl, oxide/alkoxide, and amide ligands have been grafted onto silica and their reactivities investigated. In this paper, we report a series of silica-supported tungsten and molybdenum dimers (X 3 M≡MX 3, where M = W and Mo; X = neopentyl, tert-butoxide, and dimethyl amide) and their reactivities toward catalytic olefin metathesis. Dynamic nuclear polarization (DNP)-enhanced solid-state nuclear magnetic resonance (SSNMR), diffuse reflectance infrared Fourier transform (DRIFT), UV resonance Raman, and X-ray absorption (XAS) spectroscopies suggest that upon heterogenization the dimers bind to the surface in a monopodal fashion, with the M≡M triple bond remaining intact. These structural assignments were further corroborated by density functional theory (DFT) calculations. While the homogeneous dimer counterparts are inert, the supported low-valent alkyl W and Mo dimers become active for the disproportionative self-metathesis of propylene to ethylene and butenes and 4-nonene to 4-octene and 5-decene under mild conditions. The lack of activity observed for the free and supported tert-butoxide and dimethyl amide dimers likely suggests that the neopentyl groups are necessary for the formation of a putative alkylidene active species. The difference in reactivity between the free and supported dimers could be explained either by the lowering of the activation barrier of the complex through the electronic effects of the surface or by site isolation of catalytically relevant reactive intermediates.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗