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DOE OSTI2022

Vibrational Entropy of Crystalline Solids from Covariance of Atomic Displacements

The vibrational entropy of a solid at finite temperature is investigated from the perspective of information theory. Ab initio molecular dynamics (AIMD) simulations generate ensembles of atomic configurations at finite temperature from which we obtain the N-body distribution of atomic displacements, ρN. We calculate the information-theoretic entropy from the expectation value of lnρN. At a first level of approximation, treating individual atomic displacements independently, our method may be applied using Debye–Waller B-factors, allowing diffraction experiments to obtain an upper bound on the thermodynamic entropy. At the next level of approximation we correct the overestimation through inclusion of displacement covariances. We apply this approach to elemental body-centered cubic sodium and face-centered cubic aluminum, showing good agreement with experimental values above the Debye temperatures of the metals. Below the Debye temperatures, we extract an effective vibrational density of states from eigenvalues of the covariance matrix, and then evaluate the entropy quantum mechanically, again yielding good agreement with experiment down to low temperatures. Our method readily generalizes to complex solids, as we demonstrate for a high entropy alloy. Further, our method applies in cases where the quasiharmonic approximation fails, as we demonstrate by calculating the HCP/BCC transition in Ti.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2020

Simulations and symmetries

ABSTRACT We investigate the range of applicability of a model for the real-space power spectrum based on N-body dynamics and a (quadratic) Lagrangian bias expansion. This combination uses the highly accurate particle displacements that can be efficiently achieved by modern N-body methods with a symmetries-based bias expansion which describes the clustering of any tracer on large scales. We show that at low redshifts, and for moderately biased tracers, the substitution of N-body-determined dynamics improves over an equivalent model using perturbation theory by more than a factor of two in scale, while at high redshifts and for highly biased tracers the gains are more modest. This hybrid approach lends itself well to emulation. By removing the need to identify haloes and subhaloes, and by not requiring any galaxy-formation-related parameters to be included, the emulation task is significantly simplified at the cost of modelling a more limited range in scale.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Learning effective physical laws for generating cosmological hydrodynamics with Lagrangian deep learning

The goal of generative models is to learn the intricate relations between the data to create new simulated data, but current approaches fail in very high dimensions. When the true data-generating process is based on physical processes, these impose symmetries and constraints, and the generative model can be created by learning an effective description of the underlying physics, which enables scaling of the generative model to very high dimensions. In this work, we propose Lagrangian deep learning (LDL) for this purpose, applying it to learn outputs of cosmological hydrodynamical simulations. The model uses layers of Lagrangian displacements of particles describing the observables to learn the effective physical laws. The displacements are modeled as the gradient of an effective potential, which explicitly satisfies the translational and rotational invariance. The total number of learned parameters is only of order 10, and they can be viewed as effective theory parameters. Further, we combine N-body solver fast particle mesh (FastPM) with LDL and apply it to a wide range of cosmological outputs, from the dark matter to the stellar maps, gas density, and temperature. The computational cost of LDL is nearly four orders of magnitude lower than that of the full hydrodynamical simulations, yet it outperforms them at the same resolution. We achieve this with only of order 10 layers from the initial conditions to the final output, in contrast to typical cosmological simulations with thousands of time steps. This opens up the possibility of analyzing cosmological observations entirely within this framework, without the need for large dark-matter simulations.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Impact of bar resonances in the velocity–space distribution of the solar neighbourhood stars in a self-consistent N -body Galactic disc simulation

ABSTRACT The velocity–space distribution of the solar neighbourhood stars shows complex substructures. Most of the previous studies use static potentials to investigate their origins. Instead we use a self-consistent N-body model of the Milky Way, whose potential is asymmetric and evolves with time. In this paper, we quantitatively evaluate the similarities of the velocity–space distributions in the N-body model and that of the solar neighbourhood, using Kullback–Leibler divergence (KLD). The KLD analysis shows the time evolution and spatial variation of the velocity–space distribution. The KLD fluctuates with time, which indicates the velocity–space distribution at a fixed position is not always similar to that of the solar neighbourhood. Some positions show velocity–space distributions with small KLDs (high similarities) more frequently than others. One of them locates at $(R,\phi)=(8.2\,\,\rm{\mathrm{kpc}}, 30^\circ)$, where R and ϕ are the distance from the galactic centre and the angle with respect to the bar’s major axis, respectively. The detection frequency is higher in the inter-arm regions than in the arm regions. In the velocity maps with small KLDs, we identify the velocity–space substructures, which consist of particles trapped in bar resonances. The bar resonances have significant impact on the stellar velocity–space distribution even though the galactic potential is not static.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Impact of Cosmic Filaments on Galaxy Morphological Evolution and Predictions of Early Cosmic Web Structure for Roman

We leverage the IllustrisTNG cosmological simulations to test how the large-scale cosmic web shapes galaxy morphology and to forecast the early cosmic web structure that the Nancy Grace Roman Space Telescope will reveal. In the hydrodynamic TNG50 and N-body TNG50-Dark runs, we reconstruct the cosmic web at redshifts z = 0, 0.5, 1, 2, 3, and 4 with the Monte Carlo Physarum Machine density estimator and the DisPerSE structure identification framework. We confirm that dark matter halos start out predominantly prolate (elongated), and their shapes are aligned with their nearest filaments; prolate galaxies retain strong shape alignment with their outer halos to later times. At z ≥ 1, the fraction of prolate (spheroidal) halos increases (decreases) toward lower stellar mass, higher redshift, and lower filament density. At z < 1, more spheroidal (oblate) stellar structures preferentially reside in higher-density (lower-density) filaments. We also find that higher-density filaments favor extended rotationally supported disks, whereas lower-density filaments more often host smaller dispersion-supported systems. Then, generating mock galaxy samples from TNG100 and TNG50, we predict the early cosmic web accessible to Roman. We find that the spectroscopic emission-line depth planned for the High-Latitude Wide-Area Survey (HLWAS) yields a highly incomplete galaxy sample that does not accurately trace the z = 1 cosmic web. A survey ≥2.5× deeper over a few square degrees would enable a proper reconstruction and reveal qualitatively correct filament–galaxy morphology relationships. Nevertheless, the planned HLWAS Deep field should still identify most galaxy overdensities; targeted deeper spectroscopy of these regions would efficiently and adequately map the early filamentary structure.

Hasan, Farhanul [Space Telescope Science Institute↗

DOE OSTI2021

The Completed SDSS-IV Extended Baryon Oscillation Spectroscopic Survey: N-body Mock Challenge for Galaxy Clustering Measurements

We develop a series of N-body data challenges, functional to the final analysis of the extended Baryon Oscillation Spectroscopic Survey (eBOSS) Data Release 16 (DR16) galaxy sample. The challenges are primarily based on high-fidelity catalogues constructed from the Outer Rim simulation - a large box size realization (3h(-1) Gpc) characterized by an unprecedented combination of volume and mass resolution, down to 1.85 x 10(9) h(-1)M(circle dot). We generate synthetic galaxy mocks by populating Outer Rim haloes with a variety of halo occupation distribution (HOD) schemes of increasing complexity, spanning different redshift intervals. We then assess the performance of three complementary redshift space distortion (RSD) models in configuration and Fourier space, adopted for the analysis of the complete DR16 eBOSS sample of Luminous Red Galaxies (LRG5). We find all the methods mutually consistent, with comparable systematic errors on the Alcock-Paczynski parameters and the growth of structure, and robust to different HOD prescriptions - thus validating the robustness of the models and the pipelines used for the baryon acoustic oscillation (BAO) and full shape clustering analysis. In particular, all the techniques are able to recover and alpha(11) to within 0.9 per cent, and f sigma(8) to within 1.5 per cent. As a by-product of our work, we are also able to gain interesting insights on the galaxy-halo connection. Our study is relevant for the final eBOSS DR16 'consensus cosmology', as the systematic error budget is informed by testing the results of analyses against these high-resolution mocks. In addition, it is also useful for future large-volume surveys, since similar mock-making techniques and systematic corrections can be readily extended to model for instance the Dark Energy Spectroscopic Instrument (DESI) galaxy sample.

cosmology: theory, large-scale structure of Univer↗

DOE OSTI2024

Numerical challenges in modeling gravothermal collapse in Self-Interacting Dark Matter halos

When dark matter has a large cross section for self scattering, halos can undergo a process known as gravothermal core collapse, where the inner core rapidly increases in density and temperature. To date, several methods have been used to implement Self-Interacting Dark Matter (SIDM) in N-body codes, but there has been no systematic study of these different methods or their accuracy in the core-collapse phase. In this paper, we compare three different numerical implementations of SIDM, including the standard methods from the GIZMO and Arepo codes, by simulating idealized dwarf halos undergoing significant dark matter self interactions (σ/m = 50 cm 2 /g). When simulating these halos, we also vary the mass resolution, time-stepping criteria, and gravitational force-softening scheme. The various SIDM methods lead to distinct differences in a halo's evolution during the core-collapse phase, as each results in spurious scattering rate differences and energy gains/losses. The use of adaptive force softening for gravity can lead to numerical heating that artificially accelerates core collapse, while an insufficiently small simulation time step can cause core evolution to stall or completely reverse. Additionally, particle numbers must be large enough to ensure that the simulated halos are not sensitive to noise in the initial conditions. Even for the highest-resolution simulations tested in this study (10 6 particles per halo), we find that variations of order 10% in collapse time are still present. Here, the results of this work underscore the sensitivity of SIDM modeling on the choice of numerical implementation and motivate a careful study of how these results generalize to halos in a cosmological context.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Piecewise interaction picture density matrix quantum Monte Carlo

The density matrix quantum Monte Carlo (DMQMC) set of methods stochastically samples the exact N-body density matrix for interacting electrons at finite temperature. We introduce a simple modification to the interaction picture DMQMC (IP-DMQMC) method that overcomes the limitation of only sampling one inverse temperature point at a time, instead allowing for the sampling of a temperature range within a single calculation, thereby reducing the computational cost. At the target inverse temperature, instead of ending the simulation, we incorporate a change of picture away from the interaction picture. The resulting equations of motion have piecewise functions and use the interaction picture in the first phase of a simulation, followed by the application of the Bloch equation once the target inverse temperature is reached. We find that the performance of this method is similar to or better than the DMQMC and IP-DMQMC algorithms in a variety of molecular test systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

Allosterically coupled conformational dynamics in solution prepare the sterol transfer protein StarD4 to release its cargo upon interaction with target membranes

Complex mechanisms regulate the cellular distribution of cholesterol, a critical component of eukaryote membranes involved in regulation of membrane protein functions directly and through the physiochemical properties of membranes. StarD4, a member of the steroidogenic acute regulator-related lipid-transfer (StART) domain (StARD)-containing protein family, is a highly efficient sterol-specific transfer protein involved in cholesterol homeostasis. Its mechanism of cargo loading and release remains unknown despite recent insights into the key role of phosphatidylinositol phosphates in modulating its interactions with target membranes. We have used large-scale atomistic Molecular dynamics (MD) simulations to study how the dynamics of cholesterol bound to the StarD4 protein can affect interaction with target membranes, and cargo delivery. We identify the two major cholesterol (CHL) binding modes in the hydrophobic pocket of StarD4, one near S136&S147 (the Ser-mode), and another closer to the putative release gate located near W171, R92&Y117 (the Trp-mode). We show that conformational changes of StarD4 associated directly with the transition between these binding modes facilitate the opening of the gate. To understand the dynamics of this connection we apply a machine-learning algorithm for the detection of rare events in MD trajectories (RED), which reveals the structural motifs involved in the opening of a front gate and a back corridor in the StarD4 structure occurring together with the spontaneous transition of CHL from the Ser-mode of binding to the Trp-mode. Further analysis of MD trajectory data with the information-theory based NbIT method reveals the allosteric network connecting the CHL binding site to the functionally important structural components of the gate and corridor. Mutations of residues in the allosteric network are shown to affect the performance of the allosteric connection. These findings outline an allosteric mechanism which prepares the CHL-bound StarD4 to release and deliver the cargo when it is bound to the target membrane.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

The phase space distance between collider events

How can one fully harness the power of physics encoded in relativistic N-body phase space? Topologically, phase space is isomorphic to the product space of a simplex and a hypersphere and can be equipped with explicit coordinates and a Riemannian metric. This natural structure that scaffolds the space on which all collider physics events live opens up new directions for machine learning applications and implementation. Here we present a detailed construction of the phase space manifold and its differential line element, identifying particle ordering prescriptions that ensure that the metric satisfies necessary properties. We apply the phase space metric to several binary classification tasks, including discrimination of high-multiplicity resonance decays or boosted hadronic decays of electroweak bosons from QCD processes, and demonstrate powerful performance on simulated data. Our work demonstrates the many benefits of promoting phase space from merely a background on which calculations take place to being geometrically entwined with a theory’s dynamics.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2026

The DECam MAGIC Survey: Uncovering the Tidal Tails of the Crater II Dwarf Galaxy

Crater II (CraII), a large and low-density dwarf spheroidal galaxy, has unusual observed properties that are difficult to reproduce in cold dark matter simulations. Ongoing tidal disruption may help explain the discrepancies, as evidenced by the recent discovery of tidal tails. Here we present metallicity-sensitive narrowband photometry of the Ca II H and K lines from the Dark Energy Camera, covering 128 deg$^{2}$ across the center and identified tidal tails of CraII as part of the Mapping the Ancient Galaxy in CaHK survey. Our combined photometric metallicity, color–magnitude, proper motion, and parallax selections identify 162 CraII candidates. Of these, 37 candidates are located in the tidal tails, which extend at least 7° (∼95 kpc) from the center of CraII, suggesting it has lost ≳25% of its initial stellar mass. We confirm low contamination rates with dedicated control fields and highlight the extremely low surface brightness stellar features that can be uncovered with CaHK data, as faint as ∼36 mag arcsec$^{−2}$. We also make the first detection of a metallicity gradient (−0.34 ± 0.17 dex deg$^{−1}$) in the center of the galaxy and infer a stream width of w ∼ 0.°8, roughly 50% larger than the CraII half-light radius. The detection of candidates in the most distant CraII pointings from its center implies that the tidal tails extend beyond our footprint. We compare the CraII stream to N-body models with “cored” and “cuspy” dark matter halo progenitors, determining that CraII’s density profile is still ambiguous and warrants further modeling.

Atzberger, Kaia R. [Virginia U., Astron. Dept.] (O↗

DOE OSTI2024

Determining the N -Representability of a Reduced Density Matrix via Unitary Evolution and Stochastic Sampling

The N-representability problem consists in determining whether, for a given p-body matrix, there exists at least one N-body density matrix from which the p-body matrix can be obtained by contraction, that is, if the given matrix is a p-body reduced density matrix (p-RDM). The knowledge of all necessary and sufficient conditions for a p-body matrix to be N-representable allows the constrained minimization of a many-body Hamiltonian expectation value with respect to the p-body density matrix and, thus, the determination of its exact ground state. However, the number of constraints that complete the N-representability conditions grows exponentially with system size, and hence, the procedure quickly becomes intractable for practical applications. This work introduces a hybrid quantum-stochastic algorithm to effectively replace the N-representability conditions. The algorithm consists of applying to an initial N-body density matrix a sequence of unitary evolution operators constructed from a stochastic process that successively approaches the reduced state of the density matrix on a p-body subsystem, represented by a p-RDM, to a target p-body matrix, potentially a p-RDM. The generators of the evolution operators follow the well-known adaptive derivative-assembled pseudo-Trotter method (ADAPT), while the stochastic component is implemented by using a simulated annealing process. The resulting algorithm is independent of any underlying Hamiltonian, and it can be used to decide whether a given p-body matrix is N-representable, establishing a criterion to determine its quality and correcting it. We apply the proposed hybrid ADAPT algorithm to alleged reduced density matrices from a quantum chemistry electronic Hamiltonian, from the reduced Bardeen–Cooper–Schrieffer model with constant pairing, and from the Heisenberg XXZ spin model. In all cases, the proposed method behaves as expected for 1-RDMs and 2-RDMs, evolving the initial matrices toward different targets.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Tycho: Realistically Simulating Exoplanets within Stellar Clusters. I. Improving the Monte Carlo Approach

To fully understand the diverse population of exoplanets, we must study their early lives within open clusters, the birthplace of most stars with masses >0.5M {sub ⊙} (including those currently in the field). Indeed, when we observe planets within clustered environments, we notice highly eccentric and odd systems that suggest the importance of dynamical pathways created by interactions with additional bodies (as in the case of HD 285507b). However, it has proven difficult to investigate these effects, as many current numerical solvers for the multi-scale N-body problem are simplified and limited in scope. To remedy this, we aim to create a physically complete computational solution to explore the role of stellar close encounters and interplanetary interactions in producing the observed exoplanet populations for both open cluster stars and field stars. We present a new code, Tycho, which employs a variety of different computational techniques, including multiple N-body integration methods, close encounter handling, modified Monte Carlo scattering experiments, and a variety of empirically informed initial conditions. We discuss the methodology in detail, and its implementation within the AMUSE software framework. Approximately 1% of our systems are promptly disrupted by star-star encounters contributing to the rogue planets occurrence rate. Additionally, we find that close encounters which that perturb long-period planets lead to 38.3% of solar-system-like planetary systems becoming long-term unstable.

79 ASTRONOMY AND ASTROPHYSICS↗