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At least 235 records · Page 13

Mechanisms of Skyrmion and Skyrmion Crystal Formation from the Conical Phase

Real-space topological magnetic structures such as skyrmions and merons are promising candidates for information storage and transport. However, the microscopic mechanisms that control their formation and evolution are still unclear. In this work, using in situ Lorentz transmission electron microscopy, we demonstrate that skyrmion crystals (SkXs) can nucleate, grow, and evolve from the conical phase in the same ways that real nanocrystals form from vapors or solutions. More intriguingly, individual skyrmions can also “reproduce” by division in a mitosis-like process that allows them to annihilate SkX lattice imperfections, which is not available to crystals made of mass-conserving particles. Combined string method and micromagnetic calculations show that competition between repulsive and attractive interactions between skyrmions governs particle-like SkX growth, but nonconservative SkX growth appears to be defect mediated. Our results provide insights toward manipulating magnetic topological states by applying established crystal growth theory, adapted to account for the new process of skyrmion mitosis.

36 MATERIALS SCIENCE↗

Coarse-grained molecular dynamics simulation of solvent-dependent cellulose nanofiber interactions

Associations between cellulose are important both in biofuel production and in the use of cellulose for biomaterials. Cellulose nanofibers (CNFs) are sustainable, strong, light-weight alternatives to traditional materials in manufacturing, but are challenging to obtain due to irreversible aggregation in solution during preparative fibrillation. Therefore, it is imperative to understand the underlying factors driving aggregation with a view to designing solvents that can effectively compete with interfiber interactions, hence reducing aggregation. Molecular dynamics (MD) simulation at atomic detail can provide useful information on local interactions. However, the length and timescales accessible are too short to fully capture association processes. Here, we provide a method for accessing the longer length and timescales required using coarse-grained (CG) MD simulations with a MARTINI force field to calculate the interaction behavior of CNFs in three selected solvents: NaOH-urea-water, acetone, and neat water. The CG results are consistent with our prior all-atom MD and with previous experimental results. While acetone is found not to be an effective solvent, urea and ionic moieties in NaOH-urea-water not only solvate the fibrils but also improve the confinement of water molecules around them as shown by the solvent residence times and mean-square displacements. Overall, the presence of urea and ions reduces the likelihood of aggregation in multi-CNF systems relative to neat water irrespective of whether the hydrophobic or hydrophilic CNF surfaces are interacting. In conclusion, the CG method shows clear promise for selecting potential high-performance solvents for experimental prioritization in bioenergy and biomaterials research in a relatively fast manner as well as for understanding the aggregation and rheological behavior of CNF-solvent systems.

aggregation↗

The Global Spectra-Trait Initiative: A database of paired leaf spectroscopy and functional traits associated with leaf photosynthetic capacity (v1.0.0)

The Global Spectra-Trait Initiative (GSTI) aims to generate generalizable spectra trait models using reflectance data to predict leaf traits associated with the photosynthesis capacity of leaves. It comprises a synthesized dataset of leaf trait data, input datasets and code. Leaf traits include the maximum carboxylation rate of rubisco (Vcmax), the maximum electron transport rate (Jmax), the dark respiration, as well as the prediction of leaf nitrogen, leaf mass per area (LMA), and leaf water content (LWC). The dataset comprises >7500 paired observations from around 400 species from a broad range of biomes. This dataset comprises a zip file of the GSTI GitHub repository (https://github.com/plantphys/gsti), the synthesized database (.csv) and database metadata files. This dataset was updated on 2025-12-12 with minor edits to mirror the accepted manuscript version and GitHub release (Version 1.0.0 (ESSD accepted version)). Edits included minor changes to the project documentation on GitHub and removal of 12 duplicate entries from the database.

54 ENVIRONMENTAL SCIENCES↗

The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis

Bacterial two-component systems (TCSs) often function through the detection of an extracytoplasmic stimulus and the transduction of a signal by a transmembrane sensory histidine kinase. This kinase then initiates a series of reversible phosphorylation modifications to regulate the activity of a cognate, cytoplasmic response regulator as a transcription factor. Several TCSs have been implicated in the regulation of cell cycle dynamics, cell envelope integrity, or cell wall development in Escherichia coli and other well-studied Gram-negative model organisms. However, many α-proteobacteria lack homologs to these regulators, so an understanding of how α-proteobacteria orchestrate extracytoplasmic events is lacking. In this work we identify an essential TCS, CenKR ( C ell en velope K inase and R egulator), in the α-proteobacterium Rhodobacter sphaeroides and show that modulation of its activity results in major morphological changes. Using genetic and biochemical approaches, we dissect the requirements for the phosphotransfer event between CenK and CenR, use this information to manipulate the activity of this TCS in vivo , and identify genes that are directly and indirectly controlled by CenKR in Rb . sphaeroides . Combining ChIP-seq and RNA-seq, we show that the CenKR TCS plays a direct role in maintenance of the cell envelope, regulates the expression of subunits of the Tol-Pal outer membrane division complex, and indirectly modulates the expression of peptidoglycan biosynthetic genes. CenKR represents the first TCS reported to directly control the expression of Tol-Pal machinery genes in Gram-negative bacteria, and we predict that homologs of this TCS serve a similar function in other closely related organisms. We propose that Rb . sphaeroides genes of unknown function that are directly regulated by CenKR play unknown roles in cell envelope biosynthesis, assembly, and/or remodeling in this and other α-proteobacteria.

Lakey, Bryan D. (ORCID:0000000332795242)↗

Molecular engineering of ethereal electrolyte for ultrastable Si-based high voltage full cells

The successful application of Si-based high-energy Li-ion batteries (LIBs) depends on our ability to tailor electrolyte properties to achieve long-term stability and reliable performance. In this work, we demonstrate our rationale for the molecular design of ethereal solvents to address low anodic stability issues and produce a highly electrochemically stable electrolyte for Si‖LiNi 0.8 Mn 0.1 Co 0.1 O 2 (NMC811) high-energy full cells. Unlike the trimethylsilyl group, the trifluoromethyl (–CF 3 ) group exerts a very strong electron-withdrawing effect on the glycol ether backbone, reducing the highest occupied molecular orbital (HOMO) energy level of the fluorinated glycol ether (FGE) and significantly enhancing its oxidation potential. The FGE-based electrolyte enables stable cycling of Si‖NMC811 full cells, delivering high specific capacity (900 mA h g −1 ) and coulombic efficiency (>99.78%) over extended (500) cycles. The improved electrochemical performance originates from the terminal fluorination of the diglyme backbone, which strengthens anion coordination in the solvation structure, leading to the preferential reduction of the FSI anion and the formation of robust solid electrolyte interphases (SEIs) on the Si surface. Through molecular engineering of ethereal solvents, we have discovered a promising candidate for a next-generation stable electrolyte, paving the way for the design of practical and commercially viable Si batteries.

Silicon anode↗

Evaluating cosmological biases using photometric redshifts for Type Ia Supernova cosmology with the Dark Energy Survey Supernova Program

Cosmological analyses with Type Ia Supernovae (SNe Ia) have traditionally been reliant on spectroscopy for both classifying the type of supernova and obtaining reliable redshifts to measure the distance–redshift relation. While obtaining a host-galaxy spectroscopic redshift for most SNe is feasible for small-area transient surveys, it will be too resource intensive for upcoming large-area surveys such as the Vera Rubin Observatory Legacy Survey of Space and Time, which will observe on the order of millions of SNe. Here, we use data from the Dark Energy Survey (DES) to address this problem with photometric redshifts (photo-z) inferred directly from the SN light curve in combination with Gaussian and full p(z) priors from host-galaxy photo-z estimates. Using the DES 5-yr photometrically classified SN sample, we consider several photo-z algorithms as host-galaxy photo-z priors, including the Self-Organizing Map redshifts (SOMPZ), Bayesian Photometric Redshifts (BPZ), and Directional-Neighbourhood Fitting (DNF) redshift estimates employed in the DES 3 × 2 point analyses. With detailed catalogue-level simulations of the DES 5-yr sample, we find that the simulated w can be recovered within ±0.02 when using SN+SOMPZ or DNF prior photo-z, smaller than the average statistical uncertainty for these samples of 0.03. With data, we obtain biases in w consistent with simulations within ~1σ for three of the five photo-z variants. We further evaluate how photo-z systematics interplay with photometric classification and find classification introduces a subdominant systematic component. This work lays the foundation for next-generation fully photometric SNe Ia cosmological analyses.

(cosmology:) dark energy↗

2023 Central Hanford Ecological Integrity Assessments Monitoring Report

The Hanford Site is comprised of an expanse of shrub-steppe habitats that provides exceptional ecological value to plants and animals located on the site and in the surrounding greater Columbia Basin. The U.S. Department of Energy (DOE)-managed portion of the Hanford Site, referred to from here on as Central Hanford, has been the focus of various ecological monitoring efforts, including vegetation monitoring. The scope and goals of vegetation surveys have varied greatly since the Hanford Site was established, but previous studies have documented a rapidly changing landscape, making it clear that continued vegetation monitoring is integral to preserving the ecological value of Central Hanford. A new vegetation monitoring effort was initiated in 2023 using methods based on ecological integrity assessments (EIA) (Natural Heritage Report [NHR] 2020-05) developed by the Washington Natural Heritage Program (WNHP), a division of the Washington State Department of Natural Resources (DNR) and NatureServe®. The methods were modified and supplemented to meet monitoring goals at the Hanford Site. The 2023 EIA monitoring effort consisted of field surveys to evaluate vegetation and soil condition across Central Hanford. Surveys were focused on upland habitats, and areas under consideration for upcoming projects were prioritized. Vegetation cover estimates were used to score a variety of metrics for vegetation conditions in each area. In 2023, approximately half of the site was surveyed. Monitoring methods and results for the 2023 field season are summarized in this report, and management recommendations are also provided.

54 ENVIRONMENTAL SCIENCES↗

A pushered capsule implosion as an alternate approach to the ignition regime for inertial confinement fusion

We report in inertial confinement fusion, the threshold for ignition is a highly dynamic quantity as the sources and sinks of power in the hot spot can vary rapidly. In this article, we consider the ignition condition as a race between heating and disassembly rates and make use of a prior solution to the fusion hot-spot thermodynamics to develop a Lawson-like ignition criteria for pressure × confinement time (p-τ) vs temperature. Low-Z capsule designs reach the temperature for this threshold using as much of the shell as feasible as ablator but then are limited in τ by low stagnated mass. An alternate approach, the pushered single shell (PSS) design [D. D.-M. Ho, S. MacLaren, and Y. Wang, “High-yield implosions via radiation trapping and high rho-R,” paper presented at the 60th Annual Meeting of the APS Division of Plasma Physics, 2018], introduces a dense inner layer of Mo-Be alloy that is smoothly graded outward to pure Be, increasing the confinement time at stagnation and lowering the temperature requirement at the ignition threshold. Here, we describe a PSS ignition design for the National Ignition Facility and use the theory as well as simulations to compare it with the low-Z capsule approach. Additionally, we show how an adjustment to the design is used to anticipate the effects of mixing at the fuel–ablator interface.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

CP-DSSS: A Novel Waveform for Multiple Access in IoT

Cyclic prefix direct sequence spread spectrum (CPDSSS) is a novel waveform with versatile characteristics that positions itself well as a secondary network to relieve the congested wireless spectrum. The underlying structure of CPDSSS allows for efficient and effective multi-access capabilites through frequency and time division schemes in a given system. The sum-rate capacity of the system is maximized when the spectrum is divided and allocated to users with the best signal-to-noise (SNR) ratio for the given channel slice. We propose an algorithm for dividing and allocating portions of the spectrum to multiple users with the final goal of maximizing the sumrate capacity of the network. We also propose and develop a precoding/equalization technique that reduces the length of the channel impulse response. This, when used along with a matched filter detector, leads to some improvement in the sum-rate capacity of the network

5G and Beyond Communications↗

Frequency Domain Detection and Precoding for Massive MIMO With Single Carrier Modulation

Single carrier modulation (SCM) schemes are attractive for uplink (UL) transmissions due to improved power efficiency at the user equipment (UE) transmitter compared with multi-carrier modulation schemes. In a massive MIMO scenario with SCM, the UL detection must mitigate the effects of inter-symbol interference and multiuser interference. This processing is effectively performed in the frequency domain (FD) using a minimum mean squared error (MMSE) detector when the transmission is framed with a cyclic prefix. This paper presents a MMSEbased detector that is compatible with distributed processing in a time-division duplex (TDD) system. The matrix inverses computed for the UL detection are then reused to perform multi-user precoding for the downlink (DL). We find that this scheme yields a tremendous savings in computational complexity compared to commonly used zero-forcing (ZF) precoding without sacrificing any performance. Since MMSE processing introduces a bias to the estimates, we then derive the scalar coefficients necessary to cancel the MMSE bias. The impact of channel estimation errors are analyzed for both the UL and DL cases in conjunction with a power-efficient approach to SCM channel estimation. Moreover, extensive simulations are performed to confirm our theoretical findings.

42 ENGINEERING↗

Turbine Aero-Thermal Technologies for 65% Combined Cycle Efficiency (Phase I Final Report)

GE Power (GEP), a division of General Electric Company, performed a gas turbine technology development program that integrated Aerodynamic and Heat Transfer advances as an important and innovative step towards the DOE goal of 65% combined cycle efficiency. Improved efficiency will also contribute towards the reduction in the cost of electricity identified by the DOE for the US through reduced fuel consumption, and through lowering the capital cost of the generating equipment. It is currently predicted that the result of this project will enable 0.40~0.65 pt in combined cycle efficiency improvement. This technology will be directly applicable to gas turbines utilizing coal gasification processes where hydrogen-rich coal-derived synthesis gas is produced with natural gas being the developmental fuel.

03 NATURAL GAS↗

Knowledge Transfer and Training in Safeguards for Decommissioned Nuclear Facilities (Project Final Report for FY2022)

The International Atomic Energy Agency (IAEA) applies safeguards to nuclear facilities that are not operating, including those undergoing decommissioning, and the IAEA’s effort in this area is both considerable and increasing. Specifically, the IAEA Department of Safeguards’ Division of Concepts and Planning (SGCP-003: Safeguards Approaches) identified an R&D need to “Develop safeguards implementation guidelines for facilities under decommissioning and safeguards concepts for post-accident facilities under decommissioning”. Nuclear facilities undergoing decommissioning are not exempt from safeguards agreements between the IAEA and Host State, and, accordingly, the requirement for verification of no diversion of nuclear material and detection of undeclared activities at decommissioned facilities remain even after facility shutdown. However, the effort required to meet safeguards objectives diminishes as nuclear material and essential equipment are removed during the decommissioning process which shifts the emphasis from verification of ever-diminishing fissile or source material inventories to verification of changes in facility design and equipment operability.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Mondo: integrating disease terminology across communities

Precision medicine aims to enhance diagnosis, treatment, and prognosis by integrating multimodal data at the point of care. However, challenges arise due to the vast number of diseases, differing methods of classification, and conflicting terminological coding systems and practices used to represent molecular definitions of disease. This lack of interoperability artificially constrains the potential for diagnosis, clinical decision support, care outcome analysis, as well as data linkage across research domains to support the development or repurposing of therapeutics. There is a clear and pressing need for a unified system for managing disease entities⁠—including identifiers, synonyms, and definitions. To address these issues, we created the Mondo disease ontology—a community-driven, open-source, unified disease classification system that harmonizes diverse terminologies into a consistent, computable framework. Mondo integrates key medical and biomedical terminologies, including Online Mendelian Inheritance in Man (OMIM), Orphanet, Medical Subject Headings (MeSH), National Cancer Institute Thesaurus (NCIt), and more, to provide a comprehensive and accurate representation of disease concepts with fully provenanced and attributed links back to the sources. Mondo can be used as the handle for curation of gene–disease associations utilized in diagnostic applications, research applications such as computational phenotyping, and in clinical coding systems in clinical decision support by pointing the clinician to the numerous knowledge resources linked to the Mondo identifier. Mondo's community-centric approach, stewarded by the Monarch Initiative's expertise in ontologies, ensures that the ontology remains adaptable to the evolving needs of biomedical research and clinical communities, as well as the knowledge providers.

biomedical informatics↗

Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach

ABSTRACT The Amazon rainforest has been subjected to high rates of deforestation, mostly for pasturelands, over the last few decades. This change in plant cover is known to alter the soil microbiome and the functions it mediates, but the genomic changes underlying this response are still unresolved. In this study, we used a combination of deep shotgun metagenomics complemented by a supervised machine learning approach to compare the metabolic strategies of tropical soil microbial communities in pristine forests and long‐term established pastures in the Amazon. Machine learning‐derived metagenome analysis indicated that microbial community structures (bacteria, archaea and viruses) and the composition of protein‐coding genes were distinct in each plant cover type environment. Forest and pasture soils had different genomic diversities for the above three taxonomic groups, characterised by their protein‐coding genes. These differences in metagenome profiles in soils under forests and pastures suggest that metabolic strategies related to carbohydrate and energy metabolisms were altered at community level. Changes were also consistent with known modifications to the C and N cycles caused by long‐term shifts in aboveground vegetation and were also associated with several soil physicochemical properties known to change with land use, such as the C/N ratio, soil temperature and exchangeable acidity. In addition, our analysis reveals that these alterations in land use can also result in changes to the composition and diversity of the soil DNA virome. Collectively, our study indicates that soil microbial communities shift their overall metabolic strategies, driven by genomic alterations observed in pristine forests and long‐term established pastures with implications for the C and N cycles.

carbon and nitrogen cycles↗

Correction to Reconciling Work Functions and Adsorption Enthalpies for Implicit Solvent Models: A Pt (111)/Water Interface Case Study

This errata is to correct the acknowledgment in the original published article. G.B. (partial support), V.-A.G., M.-T.N., and R.R. were supported by the U.S. Department of Energy, Office of Science, Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences Division. Computer resources were provided by Research Computing at Pacific Northwest National Laboratory and the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office of Science User Facility operated under Contract No. DE-AC02-05CH11231. PNNL is operated by Battelle for the U.S. Department of Energy under Contract DE-AC05-76RL01830. G.B. acknowledges the EPSRC for partial support in PhD funding. The authors acknowledge the use of the IRIDIS High Performance Computing Facility (IRIDIS 5) and associated support services at the University of Southampton in the completion of this work. We are grateful to the UK Materials and Molecular Modeling Hub (Thomas HPC) for computational resources, which is partially funded by EPSRC (EP/P020194/1).

continuum solvation, metal/water interfaces, ab in↗

E-Tunnel Wastewater Discharge Permit Quarterly Monitoring Report

Monitoring and sampling activities are performed at the E-Tunnel Wastewater Disposal System (ETDS) in accordance with the requirements of Water Pollution Control (WPC) Permit NEV 96021, Revision 1, which is effective October 1, 2013. Although the end date of the WPC permit is September 21, 2018, provided Nevada Division of Environmental Protection (NDEP), in a letter date September 21, 2018, provided guidance that indicated the WPC Permit NEV 96021, Revision 1, is in effect until NDEP notifies the U.S. Department of Energy, National Nuclear Security Administration Nevada Field Office otherwise. This QMR includes the results of monthly inspections and monitoring for April, May, and June 2020. Monthly inspections and monitoring were conducted on April 21, May 28, and June 24 2020. Inspections include a visual assessment of the berms, ponding, water levels relative to the overflow pipes, tunneling or burrowing into the berms, seeps at the toe of the berms, deep-rooting botanicals on the berms, and fencing. Monthly monitoring includes measurements of the instantaneous flow rate, hydrogen ion activity (pH), and specific conductance of the ETDS discharge.

99 GENERAL AND MISCELLANEOUS↗

Design and performance of an in-vacuum, magnetic field mapping system for the Muon g-2 experiment

The E989 Muon g-2 experiment at Fermilab aims to measure the anomalous magnetic moment, a$_\mu$, of the muon with a precision of 140 parts-per-billion. This requires a precise measurement of both the anomalous spin precession frequency, $\omega_a$, and the average magnetic field in terms of the equivalent, free proton Larmor frequency, $\omega_p$. The measurement of $\omega_p$ with a total systematic uncertainty of 70 parts-per-billion involves a combination of various NMR probes. There are 378 probes in fixed locations constantly monitoring field drifts. A water-based probe provides the calibration in terms of $\omega_p$. A crucial element for the multi-step measurement of $\omega_p$ is the regular mapping of the magnetic field over the muon storage region. The former E821 experiment at Brookhaven employed an in-vacuum field mapping system equipped with 17 NMR probes, which was developed by the University of Heidelberg. We have refurbished and upgraded this system with new probes and electronics. The upgrades include a new communication scheme incorporating time-division multiplexing to separate the important NMR reference clock from the data communication. The addition digitization of the NMR signals replaced the hardware-implemented zero-crossing counting of the E821 system. The digitized signals offer new capabilities in the NMR frequency analysis and its related systematic uncertainties. While the mechanical systems that move the field mapper around the ring have been mostly refurbished, the motion control system was completely replaced with a custom-built electronics centered around a commercial Galil motion controller. Both the field mapping NMR system and its motion control were successfully commissioned at Fermilab and have been in reliable operation during the first data taking periods. This article provides details of the upgrades of the field mapper and its performance.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗