Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Data analysis”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 235 records · Page 13

Evaluating parallel relational databases for medical data analysis.

Hospitals have always generated and consumed large amounts of data concerning patients, treatment and outcomes. As computers and networks have permeated the hospital environment it has become feasible to collect and organize all of this data. This raises naturally the question of how to deal with the resulting mountain of information. In this report we detail a proof-of-concept test using two commercially available parallel database systems to analyze a set of real, de-identified medical records. We examine database scalability as data sizes increase as well as responsiveness under load from multiple users.

99 GENERAL AND MISCELLANEOUS↗

A case study on parallel HDF5 dataset concatenation for high energy physics data analysis

In High Energy Physics (HEP), experimentalists generate large volumes of data that, when analyzed, helps us better understand the fundamental particles and their interactions. This data is often captured in many files of small size, creating a data management challenge for scientists. In order to better facilitate data management, transfer, and analysis on large scale platforms, it is advantageous to aggregate data further into a smaller number of larger files. However, this translation process can consume significant time and resources, and if performed incorrectly the resulting aggregated files can be inefficient for highly parallel access during analysis on large scale platforms. In this paper, we present our case study on parallel I/O strategies and HDF5 features for reducing data aggregation time, making effective use of compression, and ensuring efficient access to the resulting data during analysis at scale. We focus on NOvA detector data in this case study, a large-scale HEP experiment generating many terabytes of data. Here, the lessons learned from our case study inform the handling of similar datasets, thus expanding community knowledge related to this common data management task.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NuMI Beam Monitoring Simulation and Data Analysis Status and Progress

With the Main Injector Neutrino Oscillation Search (MINOS) experiment decommissioned, muon and hadron monitors became an important diagnostic tool for the NuMI O↵- axis vμ Appearance (NOvA) experiment at Fermilab to monitor the Neutrinos at the Main Injector (NuMI) beam. The goal of this study is to maintain the quality of the monitor signals and to establish correlations with the neutrino beam profile. And we carry out a systematic study of the response of the muon monitors to the changes in the parameters of the proton beam and lattice parameters. We report here on the progress of the beam data analysis and comparison with the simulation results.

43 PARTICLE ACCELERATORS↗

Solving linear equations with messenger-field and conjugate gradient techniques: An application to CMB data analysis

We discuss linear system solvers invoking a messenger-field and compare them with (preconditioned) conjugate gradient approaches. We show that the messenger-field techniques correspond to fixed point iterations of an appropriately preconditioned initial system of linear equations. We then argue that a conjugate gradient solver applied to the same preconditioned system, or equivalently a preconditioned conjugate gradient solver using the same preconditioner and applied to the original system, will in general ensure at least a comparable and typically better performance in terms of the number of iterations to convergence and time-to-solution. We illustrate our conclusions with two common examples drawn from the cosmic microwave background (CMB) data analysis: Wiener filtering and map-making. In addition, and contrary to the standard lore in the CMB field, we show that the performance of the preconditioned conjugate gradient solver can depend significantly on the starting vector. In conclusion, this observation seems of particular importance in the cases of map-making of high signal-to-noise ratio sky maps and therefore should be of relevance for the next generation of CMB experiments.

79 ASTRONOMY AND ASTROPHYSICS↗

Instrumentation and Data Analysis Supporting the Transient Rod Pneumatic System Design Study at the Annular Core Research Reactor

The Sandia National Laboratories Annular Core Research Reactor (ACRR) has been experiencing intermittent failures of its pneumatically operated transient rod system. The most frequent failures have been to the dashpot rod where it connects to the upper aluminum connecting rod. Within the three systems, Transient Rod (TR) A has the most frequent failures. In order to conduct the pulse operations, the Transient Rods are pneumatically driven to quickly remove "poison" from the reactor core. During these pulse operations increased forces and vibrations are placed on the TR system. In an effort to fix these problems, Sandia's TA-V Nuclear Reactor and Systems Engineering Department (Engineering Department) has started an extensive Transient Rod Pneumatic System Design Study. The goal of this study is to determine the causes of the elevated failure rates in TR A. This necessitates an increased understanding of the dynamics in the TR systems. This report will cover the approach taken and reasoning behind the choices of instrumentation, calibration, data collection and data analysis used to diagnose these failures. In order to determine the types and specifications for the sensors that will be installed, estimates of the TR system performance needed to be determined. Using known and assumed parameters, mechanical and thermodynamic models were developed, and calculations performed to estimate ranges of displacement, speed, and acceleration experienced by the transient rod system. After some preliminary data collection, the thermodynamic models were refined for better accuracy. After installation of the full suite of sensors, data can be collected and analyzed in order to determine the cause of the increased failures.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Friction Experiment Data Analysis

The Spent Fuel Waste Disposition (SFWD) program under the U.S. Department of Energy (DOE) is planning a seismic shake table test of full-scale dry storage systems of spent nuclear fuel (SNF) to close the gap related to the seismic loads on the fuel assemblies in dry storage systems. This test will allow for quantifying the strains and accelerations on surrogate fuel assembly during representative earthquakes. A concrete layer will be installed on the shake table before the test to simulate conditions representative of an ISFSI pad. In the shake table tests with the vertical cask, the cask will be free-standing because this is representative of all, except two, ISFSIs in the U.S. with vertical dry storage casks. The static and dynamic friction coefficients between the steel bottom of the cask and the concrete layer on the shake table are important parameters that will affect cask behavior during the test. These parameters must be known for the pre- and post-test modelling, data analysis, and model validation. The friction experiment was performed at the Engineering Department of the University of New Mexico (UNM) to determine the friction coefficients between a steel plate with the same finish as the bottom of the vertical cask manufactured for the test and different concrete surfaces. In this experiment the steel plate was fixed and the concrete sample was pulled over the plate with a constant displacement rate using an MTS machine. This allowed for collecting continuous horizontal force data over the length of the steel plate. Four displacement rates and three vertical loads were used. The tests were performed with four concrete blocks with different degrees of the surface roughness - light sandblast, light to medium sandblast, medium bush hammer, and heavy sandblast. The total number of tests was 48. The data were used to calculate static and dynamic friction coefficients.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Advanced data analysis in inertial confinement fusion and high energy density physics

Bayesian analysis enables flexible and rigorous definition of statistical model assumptions with well-characterized propagation of uncertainties and resulting inferences for single-shot, repeated, or even cross-platform data. This approach has a strong history of application to a variety of problems in physical sciences ranging from inference of particle mass from multi-source high-energy particle data to analysis of black-hole characteristics from gravitational wave observations. The recent adoption of Bayesian statistics for analysis and design of high-energy density physics (HEDP) and inertial confinement fusion (ICF) experiments has provided invaluable gains in expert understanding and experiment performance. In this Review, we discuss the basic theory and practical application of the Bayesian statistics framework. We highlight a variety of studies from the HEDP and ICF literature, demonstrating the power of this technique. Due to the computational complexity of multi-physics models needed to analyze HEDP and ICF experiments, Bayesian inference is often not computationally tractable. Two sections are devoted to a review of statistical approximations, efficient inference algorithms, and data-driven methods, such as deep-learning and dimensionality reduction, which play a significant role in enabling use of the Bayesian framework. We provide additional discussion of various applications of Bayesian and machine learning methods that appear to be sparse in the HEDP and ICF literature constituting possible next steps for the community. We conclude by highlighting community needs, the resolution of which will improve trust in data-driven methods that have proven critical for accelerating the design and discovery cycle in many application areas.

47 OTHER INSTRUMENTATION↗

Kernels for scalable data analysis in science: Towards an architecture-portable future

In this paper, we pose and address some of the unique challenges in the analysis of scientific Big Data on supercomputing platforms. Our approach identifies, implements and scales numerical kernels that are critical to the instantiation of theory-inspired analytic workflows on modern computing architectures. We present the benefits of scalable kernels towards constructing algorithms such as principal component analysis and non-negative matrix factorization on an image-analysis use case at the Oak Ridge Leadership Computing Facility (OLCF). Based on experience with the use-case, we conclude that piecing scalable analytic kernels into user-defined analytic workflows are a flexible, modular and agile way to enable architecture-portable productivity for the data-intensive sciences.

Sukumar, Sreenivas R.↗

Detector Instrumentation, Energy Reconstruction and Data Analysis in the DUNE and NOvA Neutrino Experiments

Neutrino oscillations are so far the only experimental observation beyond the standard model since its development four decades ago. The remaining fundamental questions that can be answered by long-baseline neutrino oscillations are (1) the CP violation (whether neutrinos and antineutrinos behave the same way in oscillation), and (2) the mass hierarchy ($m_3>m_{1,2}$ or $m_{1,2}>m_3$), and (3) the octant of $\theta_{23}$ ($\theta_{23}>45^\circ, =45^\circ$ or $<45^\circ$). The PI's group at UCI focuses on long-baseline neutrino experiments DUNE and NOvA, key components of DOE's Intensity Frontier program. NOvA is the current major U.S.-based long-baseline neutrino experiment aiming to solve the mass hierarchy and $\theta_{23}$ octant. It is taking $\nu$ and $\bar{\nu}$ data from the NuMI beam at Fermilab. DUNE is the next-generation flagship neutrino experiment in the U.S. which is designed to decisively determine neutrino CP violation, mass hierarchy and $\theta_{23}$ octant. DUNE is Fermilab's first priority, and has been established as an international collaboration. During the period covered by the report, the PI's group has been exceptionally productive, with leading contributions to DUNE argon-purity monitoring detectors, NOvA/DUNE deep-learning reconstruction, and NOvA oscillation and near detector (ND) analyses. The group also is actively involved in DUNE/NOvA detector operation, data production, calibration, software upgrade and maintenance, and ProtoDUNE cold electronic QA/QC. Specifically, we have made accomplishments in the following four research projects: 1) Purity monitor R\&D and data analysis for DUNE, 2) Deep-learning-based energy reconstruction at NOvA and DUNE, 3) Oscillation analysis at NOvA, and 4) $\nu$-e elastic scattering analysis at NOvA.

47 OTHER INSTRUMENTATION↗

Intelligent Sampling for Surrogate Modeling, Hyperparameter Optimization, and Data Analysis

Sampling techniques are used in many fields, including design of experiments, image processing, and graphics. The techniques in each field are designed to meet the constraints specific to that field such as uniform coverage of the range of each dimension or random samples that are at least a certain distance apart from each other. When an application imposes new constraints, for example, by requiring samples in a non-rectangular domain or the addition of new samples to an existing set, a common solution is to modify the algorithm currently in use, often with less than satisfactory results. As an alternative, we propose the concept of intelligent sampling, where we devise algorithms specifically tailored to meet our sampling needs, either by creating new algorithms or by modifying suitable algorithms from other fields. Surprisingly, both qualitative and quantitative comparisons indicate that some relatively simple algorithms can be easily modified to meet the many sampling requirements of surrogate modeling, hyperparameter optimization, and data analysis; these algorithms outperform their more sophisticated counterparts currently in use, resulting in better use of time and computer resources.

97 MATHEMATICS AND COMPUTING↗

TopPICR: A Companion R Package for Top-Down Proteomics Data Analysis

Top-down proteomics is the analysis of proteins in their intact form without proteolysis, thus preserving valuable information about post-translational modifications, isoforms, and proteolytic processing. However, it is still a developing field due to limitations in the instrumentation, difficulties with interpretation of complex mass spectra, and a lack of well-established quantification approaches. TopPIC is one of the popular tools for proteoform identification. Here we extended its capabilities into label-free proteoform quantification by developing a companion R package (TopPICR). Key steps in the TopPICR pipeline include filtering identifications, inferring a minimal set of protein accessions explaining the observed sequences, aligning retention times, recalibrating measured masses, clustering features across datasets, and finally compiling feature intensities using the match-between-runs approach. The output of the pipeline is an MSnSet object which makes downstream data analysis seamlessly compatible with packages from the Bioconductor project. It also provides the capability for visualizing proteoforms within the context of the parent protein sequence. The functionality of TopPICR is demonstrated on top-down LC-MS/MS datasets of 10 human-in-mouse xenografts of luminal and basal breast tumor samples.

59 BASIC BIOLOGICAL SCIENCES↗

Integrated Data Analysis to Improve Te and Zeff Measurement on NSTX-U

The multi-energy soft x-ray (ME-SXR) camera is a new concept for a fusion plasma diagnostic based on a pixelated detector with adjustable photon cutoff thresholds. It is a single, compact, solid-state detector which combines spatial and spectral sensitivity and can be configured remotely at run time, making it ideal for a fusion environment. The detector can be configured for application to a wide range of physics problems including impurity transport, electron temperature profiles, and non-thermal effects. The detector has been installed on the Madison Symmetric Torus (MST) as part of a collaboration between Princeton Plasma Physics Laboratory and the University of Wisconsin–Madison to develop the technology and analysis techniques. A full diagnostic forward model of the ME-SXR diagnostic has been developed to enable analysis of the raw photon count data. This model incorporates the atomic physics underlying the plasma emission, diagnostic geometry, and detector response characteristics. Employing this model, a Bayesian analysis approach is used to extract electron temperature from the raw data. This analysis approach uses all available information, clearly quantifies prior information, and handles uncertainties transparently. The ME-SXR camera is being used to study the 3D (helical, stellarator-like) state that forms in the MST device. This helical core structure has improved energy confinement. The transition to the helical state is accompanied by a rise in electron temperature in the central part of the helical structure, but then this enhancement fluctuates. The characteristics of this fluctuation are being compared to a magneto-hydrodynamics model.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

High-resolution broadband spectroscopy using externally dispersed interferometry at the Hale telescope: Part 1, data analysis and results

High-resolution broadband spectroscopy at near-infrared wavelengths (950 to 2450 nm) has been performed using externally dispersed interferometry (EDI) at the Hale telescope at Mt. Palomar. Observations of stars were performed with the “TEDI” interferometer mounted within the central hole of the 200-in. primary mirror in series with the comounted TripleSpec near-infrared echelle spectrograph. These are the first multidelay EDI demonstrations on starlight, as earlier measurements used a single delay or laboratory sources. We demonstrate very high (10×) resolution boost, from original 2700 to 27,000 with current set of delays (up to 3 cm), well beyond the classical limits enforced by the slit width and detector pixel Nyquist limit. Significantly, the EDI used with multiple delays rather than a single delay as used previously yields an order of magnitude or more improvement in the stability against native spectrograph point spread function (PSF) drifts along the dispersion direction. We observe a dramatic (20×) reduction in sensitivity to PSF shift using our standard processing. A recently realized method of further reducing the PSF shift sensitivity to zero is described theoretically and demonstrated in a simple simulation which produces a 350× times reduction. We demonstrate superb rejection of fixed pattern noise due to bad detector pixels—EDI only responds to changes in pixel intensity synchronous to applied dithering. This part 1 describes data analysis, results, and instrument noise. Lastly, a section on theoretical photon limited sensitivity is in a companion paper, part 2.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Ex situ metrology and data analysis for optimization of beamline performance of aspherical pre-shaped x-ray mirrors at the advanced light source

Super high quality aspherical x-ray mirrors with a residual slope error of ~100 nrad (root-mean-square) and a height error of ~1-2 nm (peak-to-valley), and even lower, are now available from a number of the most advanced vendors utilizing deterministic polishing techniques. The mirror specification for the fabrication is based on the simulations of the desired performance of the mirror in the beamline optical system and is normally given with the acceptable level of deviation of the mirror figure and finish from the desired ideal shape. For example, in the case of aspherical x-ray mirrors designed for the Advanced Light Source (ALS) QERLIN beamline, the ideal shape is defined with the beamline application (conjugate) parameters and their tolerances. Here, we first introduce an original procedure and dedicated software developed at the ALS X-Ray Optics Laboratory (XROL) for optimization of beamline performance of pre-shaped hyperbolic and elliptical mirrors. The optimization is based on results of ex situ surface slope metrology and consists in minimization of the mirror shape error by determining the conjugate parameters of the best-fit ideal shape within the specified tolerances. We describe novel optical metrology instrumentation, measuring techniques, and analytical methods used at the XROL for acquisition of surface slope data and optimization of the optic’s beamline performance. The high efficacy of the developed experimental methods and data analysis procedures is reflected in results of measurements with and performance optimization of hyperbolic and elliptical cylinder mirrors designed and fabricated for the ALS QERLIN beamline.

47 OTHER INSTRUMENTATION↗

A data analysis method to rapidly characterize gallium concentration in plutonium matrices using LIBS

The processing of actinide samples is a complex and costly endeavor that requires compositional analysis at various stages. Laser-induced breakdown spectroscopy (LIBS) has been used to analyze actinide-containing samples in many nuclear applications including waste management, fuel processing and forensics. The LIBS spectrum obtained from actinide materials are generally extremely complex, exhibiting many thousands of strong emission lines. This makes it difficult to identify other elements within the sample of interest, given the rich and dominant actinide spectrum. Here, in this article, we describe a recent effort to identify and quantify impurities and alloying constituents in plutonium matrices using a hand-held LIBS instrument that is used to rapidly and efficiently measure an emission spectrum from a material sample. We tabulate the emission line positions and intensities of plutonium. We report the development of machine-learning software that can identify gallium and quantify its concentration in plutonium matrices. This work has the potential to provide a rapid and nearly non-destructive technique that allows more confidence in characterizing the composition of materials that are present within complex actinide associated targets. We describe how our LIBS measurements and data analysis methods have successfully quantified the gallium concentration in a variety of samples.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Discovering the Whole by the Coarse: A topological paradigm for data analysis

The increasing interest in big data applications is ushering in a large effort in seeking new, efficient, and adapted data models to reduce complexity, while preserving maximal intrinsic information. Graph-based models have recently been getting a lot of attention on account of their intuitive and direct connection to the data. The cost of these models, however, is to some extent giving up geometric insight as well as algebraic flexibility. Topology, as an intermediate analysis medium, focuses on coarse structures of an object/signal in general. It affords a formalism of transitioning from a local to a global description of an object, while providing significant information, which respects the local structure of measurements. It may also support a global visualization (e.g., data variation trends) and enhances the understanding of the underlying phenomenon. Throughout this article, measurements may be considered proximal in various ways, depending on the specific application, and the selected proximity metrics are subsequently used in the construction of a graph structure, thus highlighting various groups of neighboring data. As described later, these groups, often based on proximity criteria, are represented by n-simplices, where n + 1 corresponds to the number of points in an associated group. Collectively, they form what is (and will be throughout) referred to as a simplicial complex, a special representation of a topological space. We find the key advantage of computational topology is its inherently algebraic structure on the basic elements of the resulting graph-like structure.

97 MATHEMATICS AND COMPUTING↗

Integrating advanced materials simulation techniques into an automated data analysis workflow at the Spallation Neutron Source

This presentation will review developments on the integration of advanced modeling and simulation techniques into the analysis step of experimental data obtained at the Spallation Neutron Source. A workflow framework for the purpose of refining molecular mechanics force-fields against quasi-elastic neutron scattering data is presented. The workflow combines software components to submit model simulations to remote high performance computers, a message broker interface for communications between the optimizer engine and the simulation production step, and tools to convolve the simulated data with the experimental resolution. A test application shows the correction to a popular fixed-charge water model in order to account polarization effects due to the presence of solvated ions. Future enhancements to the refinement workflow are discussed. This work is funded through the DOE Center for Accelerating Materials Modeling.

Borreguero Calvo, Jose M↗

HiSPoD : a program for high-speed polychromatic X-ray diffraction experiments and data analysis on polycrystalline samples

Here, a high-speed X-ray diffraction technique was recently developed at the 32-ID-B beamline of the Advanced Photon Source for studying highly dynamic, yet non-repeatable and irreversible, materials processes. In experiments, the microstructure evolution in a single material event is probed by recording a series of diffraction patterns with extremely short exposure time and high frame rate. Owing to the limited flux in a short pulse and the polychromatic nature of the incident X-rays, analysis of the diffraction data is challenging. Here, HiSPoD , a stand-alone Matlab-based software for analyzing the polychromatic X-ray diffraction data from polycrystalline samples, is described. With HiSPoD , researchers are able to perform diffraction peak indexing, extraction of one-dimensional intensity profiles by integrating a two-dimensional diffraction pattern, and, more importantly, quantitative numerical simulations to obtain precise sample structure information.

36 MATERIALS SCIENCE↗