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At least 235 records · Page 13

Inferring microbial interactions with their environment from genomic and metagenomic data

Microbial communities assemble through a complex set of interactions between microbes and their environment, and the resulting metabolic impact on the host ecosystem can be profound. Microbial activity is known to impact human health, plant growth, water quality, and soil carbon storage which has lead to the development of many approaches and products meant to manipulate the microbiome. In order to understand, predict, and improve microbial community engineering, genome-scale modeling techniques have been developed to translate genomic data into inferred microbial dynamics. However, these techniques rely heavily on simulation to draw conclusions which may vary with unknown parameters or initial conditions, rather than more robust qualitative analysis. To better understand microbial community dynamics using genome-scale modeling, we provide a tool to investigate the network of interactions between microbes and environmental metabolites over time. Using our previously developed algorithm for simulating microbial communities from genome-scale metabolic models (GSMs), we infer the set of microbe-metabolite interactions within a microbial community in a particular environment. Because these interactions depend on the available environmental metabolites, we refer to the networks that we infer as metabolically contextualized , and so name our tool MetConSIN: Met abolically Con textualized S pecies I nteraction N etworks.

59 BASIC BIOLOGICAL SCIENCES↗

Modernization of PLC-Based Control Systems at SNS

When the SNS site was built around 20 years ago, the Conventional Facilities (CF) control systems were de-signed using 2 communication protocols to allow pro-grammable logic controllers (PLCs) to interface with motors, variable frequency drives (VFDs), and remote input and output (I/O) devices. The protocol chosen to control motors and VFDs is DeviceNet, a CANbus-based protocol developed by Allen-Bradley, a subsidiary of Rockwell Automation. The protocol chosen to communi-cate with remote I/O is ControlNet, another protocol developed by Allen-Bradley. Both of these protocols are obsolete and present reliability and maintainability is-sues, particularly DeviceNet. As the Control Systems Section at SNS is working to modernize control systems throughout the machine, a major goal for PLC-based systems is to remove the obsolete communication proto-cols in favor of standard, ubiquitous Ethernet. To this end, any new VFDs installed use Ethernet communica-tion. Many VFDs are currently being replaced in the Central Utilities Building (CUB) and the Central Exhaust Facility (CEF) and are being removed from DeviceNet in favor of Ethernet communication. Planning is underway to retrofit Eaton Intelligent Technology motor control centers (MCCs) in the Target Building to remove particu-larly troublesome DeviceNet adaptors and replace them with Ethernet adaptors for each motor starter. The Con-trolNet network in the CUB has been demolished, with I/O drops integrated into a local Ethernet network, im-proving sustainability and maintainability.

Beaushaw, Isaiah [ORNL]↗

The European ERL Roadmap

Following the European Strategy process in 2019, five Roadmap Panels were set up to prepare the technologies needed for future accelerators and colliders: high-field magnets, SRF, muon colliders, plasma wakefield accelera-tors and Energy Recovery Linacs (ERLs). The ERL Roadmap Panel, consisting of ERL experts from around the world, first developed an overview of current and future ERLs. From this it was possible to carry out a gap analysis to see what R&D would be needed, from which the roadmap could be developed. The European ERL Roadmap [1] focused on three main aspects: 1) the con-tinuation and development of facility programs for which no additional funds are needed, S-DALINAC in Darm-stadt and MESA in Mainz; 2) technology development for room-temperature HOM damping and twin-axis SRF cavities; 3) the timely upgrade of bERLinPro for 100 mA current and the construction of PERLE at Orsay as a dedi-cated 10 MW power multi-turn facility. The roadmap entails a vision of a future energy frontier electron-positron and electron-hadron collider and describes a high-quality ERL program for 4.4K SRF technology at high Q0.

Hutton, A.↗

RESONANT MATCHING SECTION FOR CEBAF ENERGY UPGRADE

Thomas Jefferson National Accelerator Facility (Jeffer- son Lab) currently studies the feasibility of upgrading its energy to 22 GeV. It considers addition of six more linac passes. The highest energy passes will share two new arcs designed using the Fixed-Field Alternating Gradient (FFA) technology. The FFA arcs are built using permanent combined-function magnets. They will be connected to the linacs through transition sections that will match the optics of all six passes to the linacs. With the high number of con- straints and the limited space available, we are investigating a parametric resonance technique to match the optics quasi- independently at each energy. A resonance is excited at each individual energy to selectively control its optics. The reso- nant dipole and quadrupole kick harmonics are imposed for all energies simultaneously using Panofsky corrector mag- nets placed throughout the FFA arcs. This paper presents the current progress on that transition section design

Deitrick, K.↗

OPTIMIZATION OF COOLING DISTRIBUTION OF THE EIC SHC COOLER ERL

The Electron-Ion Collider (EIC) Hadron Storage Ring (HSR) will use strong hadron cooling to maintain the beam brightness and high luminosity during long collision ex?periments. An Energy Recovery Linac is used to deliver the high-current high-brightness electron beam for cooling. For the best cooling effect, the electron beam requires low emittance, small energy spread, and uniform longitudinal distribution. In this work, we simulate and optimize the longitudinal laser-beam distribution shaping at the photo?cathode, modeling space charge forces accurately. Machine parameters such as RF cavity phases are optimized in con?junction with the beam distribution using a genetic optimizer. We demonstrate improvement of the cooling distribution in key parameters.

Wang, N.↗

TRANSENSOR: Transformer Real-time Assessment INtelligent System with Embedded Network of Sensors and Optical Readout. Final Report

Utilities across the world are wrestling with evolving market dynamics, population growth and climate change. Distributed Energy Resources (DERs) such as solar photovoltaics, distributed generators and energy storage systems are becoming important parts of the U.S. energy mix. These factors are driving an increasing need for low-cost grid asset monitoring. Aside from being costly, traditional utility monitoring systems are not sufficiently robust and do not provide real-time visibility into the condition of grid assets such as transformers. Lack of accurate real-time measurements on performance has resulted in the use of lagging indicators, such as oil sample analysis. To address this need, an innovative embedded optical sensing technology, Transformer Real-time Assessment Intelligent System (TRANSENSOR) was developed, validated and demonstrated in this project. To date, TRANSENSOR has focused on transformers but is extendable to other grid assets. In addition to the technology being embedded into new transformers during manufacturing, a retrofit configuration that can be installed on existing transformers in the field was also developed. It is anticipated that the ability to retrofit existing transformers will help accelerate adoption of the underlying TRANSENSOR technology. Phase 1 of the project focused on laboratory development and qualification of the technology. Following iterations and exploration of relevant optical sensing modalities and multiplexed configurations of interest for the transformer environment, an effective candidate configuration was agreed upon, down-selected and custom-designed for embedding into General Electric (GE) network transformers. Two new GE 500 kilovolt ampere (kVA), 27 kilovolt (kV) distribution network transformers were built with embedded fiber-optic (FO) sensors and successfully qualified per industry standards at GE’s Shreveport, Louisiana facility during Phase 1 of the project. Following the successful completion of Phase 1, the team proceeded to Phase 2, which focused on a field demonstration of the technology. Over Phase 2, the first new GE transformer built with embedded fiber-optic sensors was installed in an above-ground cage and connected to the grid at Con Edison’s Astoria facility. A second transformer equipped with TRANSENSOR was installed in an underground vault. Additionally, an older (1982 year model) GE transformer in an above-ground cage was retrofitted with fiber- optic sensors and reconnected to the grid at ConEd’s facility. Analysis of data acquired from the sensors showed interesting correlations with transformer loading. Additionally, key events such as transformer low-voltage network connection, primary-side energizing, and a pressure loss event from an oil sampling were detected by the TRANSENSOR system. Online data processing/feature extraction algorithms for the second transformer in the underground vault detected key features and event alerts that were transmitted through a wireless 4G connection. The remote deployment concept showed promising results with data collection running for a total of 8 months across the three (3) GE transformers instrumented for the Phase 2 field demonstration. This sets the stage well for further development and commercialization.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Fast Dynamic Aperture Optimization with Reversal Integration

A fast method for dynamic aperture (DA) optimization of storage rings has been developed through the use of reversal integration. Even if dynamical systems have an exact reversal symme- try, a numerical forward integration di ers from its reversal. For chaotic trajectories, cumulative round-o errors are scaled, which results in an exponential growth in the di erence. The exponential e ect, intrinsically associated with the Lyapunov exponent, is a generic indicator of chaos because it represents the sensitivity of chaotic motion to an initial condition. A chaos indicator of the charged particle motion is then obtained by comparing the forward integrations of particle trajectories with corresponding reversals, a.k.a. \backward integrations." The indicator was con rmed to be ob- servable through short-term particle tracking simulations. Therefore, adopting it as an objective function could speed up optimization. The DA of the National Synchrotron Light Source II storage ring, and another test di raction-limited light source ring, were optimized using this method for the purpose of demonstration.

36 MATERIALS SCIENCE↗

Crossroads Baker, "Helen of Bikini"

Test Baker, the underwater detonation of a Fat Man bomb nicknamed Helen of Bikini by an anonymous “Kilroy,” took place on July 25, 1946. Encased in a bathysphere fashioned from a submarine conning tower and suspended ninety feet below the surface of Bikini’s lagoon, Helen of Bikini was spectacular. Her energy burst through the lagoon surface at 11,000 ft. /sec pushing over two million cubic yards of radioactive seawater and sediment to a height of 4,300 feet within sixty seconds. Nine vessels were sunk and an additional five ships were physically destroyed, although still afloat. When it collapsed, the column of radioactive sediment and seawater spread over the surviving ships permanently contaminating them. Helen of Bikini destroyed the entire fleet of target vessels.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

On Hydrodynamics Generated from Electrostatic Discharges: A Heat Source Perspective

A parameter space map of a heat source depositing energy into a cylindrical spark channel modeling the hydrodynamic effects of an electrostatic discharge event is explored. The four parameters of spatial weight, λ R , rise time, τ r , fall time, τ f , and energy per unit length deposited in to the system, E 0 /h, were varied to observe resulting hydrodynamic phenomena. The energy budget con-sequences of the associated hydrodynamic flow are discussed in terms of the remaining electrical energy available for the joule heating of sensitive energetic materials (or “victims”) are discussed,where hydrodynamic simulations are validated by experimental data. Future results and conclusions will be added to this report as they are produced.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Tritiated Water Disposition Strategies

Tritium, a radioactive isotope of hydrogen, is typically confined within one or more confinement barriers. Tritium readily reacts with oxygen to form tritiated water or can exchange with protium or deuterium atoms in water to create tritiated water which is around 10,000 times more toxic than elemental tritium. Primary tritium confinement systems can create small volumes of highly tritiated water. Secondary confinement systems, like inert gloveboxes, will produce larger volumes of lower concentration tritiated water. Much larger volumes of tritiated water of very low tritium content are produced by tritium permeation/diffusion. Tritium from inside primary and secondary confinement barriers will diffuse from these systems into cooling water systems. Closed loop, recirculating cooling water systems will slowly accumulate tritium and create concentrations which exceed drinking water (or permitted discharge) concentrations. The cooling water systems designed as series of interconnected cooling loops that can slowly transfer tritium from one cooling loop to another cooling loop through heat exchangers. These large volumes of tritiated water may be above federal discharge limits and also lack convenient disposition pathways. This document will discuss tritiated water management strategies from the perspective of large volume, low tritium concentrations that exceed drinking water or permitted discharge limits. Applicable US regulatory requirements for a Molybdenum-99 (Mo-99) production facility concerning tritiated water are also cited. Tritiated water disposition options, based on typical waste minimization strategies will guide dispositions options. A Case Study example is presented to illustrate the pros and cons of several disposition options. The report does not recommend any particular disposition pathway but discusses strategies to be explored by a producer to guide selection of processes which best fits the needs of a particular waste stream.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Analytic Modeling of a Deep Shielding Problem

Previous generations of scientists would make tremendous efforts to simplify non-tractable problems and generate simpler models that preserved the fundamental physics. This process involved applying assumptions and simplifications to reduce the complexity of the problem until it reached a solvable form. Each assumption and simplification was chosen and applied with the intent to preserve the essential physics of the problem, since, if the core physics of the problem were eliminated, the simplified model served no purpose. Moreover, if done correctly, solutions to the reduced model would serve as useful approximations to the original problem. In a sense, solving the simple models laid the ground-work for and provided insight into the more complex problem. Today, however, the affordability of high performance computing has essentially replaced the process for analyzing complex problems. Rather than "building up" a problem by understanding smaller, simpler models, a user generally relies on powerful computational tools to directly arrive at solutions to complex problems. As computational resources grow, users continue trying to simulate new, more complex, or more detailed problems, resulting in continual stress on both the code and computational resources. When these resources are limited, the user will have to make concessions by simplifying the problem while trying to preserve important details. In the context of the Monte Carlo N-Particle radiation transport simulation tool, simplifications typically come as reductions in geometry, or by using variance reduction techniques. Both approaches can influence the physics of the problem, leading to potentially inaccurate or non-physical results. Errors can also be introduced as a result of faulty input into a computational tool: something as simple as transposing numbers in a tally input can result in incorrect answers. In this paradigm, reduced complexity computational and analytical models still have an important purpose. The explicit form of an analytic solution is arguably the best way to understand the qualitative properties of simple models. In contrast to "building up" a complex problem through understanding simpler problems, results from detailed computational scenarios can be better explained by "building down" the complex model through simple models rooted in the fundamental or essential phenomenology. Simplified analytic and computational models can be used to 1) increase a user's confidence in the computational solution of a complex model, 2) con firm there are no user input errors, and 3) ensure essential assumptions of the simulation tool are preserved. This process of using analytic models to develop a more valuable analysis of simulation results is named the results assessment methodology. The utility of the results assessment methodology and a complimentary sensitivity analysis is exempli fied through the analysis of the neutron flux in a dry used fuel storage cask. This application was chosen due to current scientific interest in used nuclear fuel storage.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Isospin dependence of Nucleon-Nucleon Short-range Correlations in Inclusive Scattering with Tritium and Helium-3

The nucleon-nucleon (NN) potential has a strong repulsive core. When a two-nucleon (sub)system falls into this range, they will interact strongly at short distance, and move away from each other with momenta above the Fermi level. This is called the NN Short range Correlations (SRCs). Previous experiments reported a neutron-proton pair (isos inglet) dominance in high-momentum nucleons. In inclusive electron scattering, this np dominance will cause a scaling behavior of cross sections at 1.4 < xbj = Q2/2m? < 2 where the high-momentum nucleons dominate. At Je?erson Lab Hall A we checked this hypothesis with electron Quasi-elastic (QE) scattering on A=3 nuclei systems. Our unique gas cell design made electron-tritium scattering possible for the ?rst time in a decade. The 2H, 3H, and 3He inclusive cross sections at 1 < xbj < 3 were measured in two experiments (E12-11-112 and E12-14-011) with a wide Q2 range (0.4 < Q2 < 3 GeV2). This thesis dis cusses the physics goals, experiment setup, and data analysis of the E12-11-112 experiment. Ratios of 3H/2H, 3He/2H and 3H/3He as well as absolute cross sections are presented at 0.4 < Q2 < 1.8 GeV2. NN SRC plateaus are observed in the cross section ratios at high Q2. The 3H/3He ratio of 0.84±0.01 at NN SRC dominant kinematics indicates a np to pp SRC pair ratio of 2.2±0.2 in A=3 nuclei. That implies a preference in T = 0 isospin singlet con?guration. No plateaus are observed at xbj > 2.

Li, Shujie↗

Review of Intrusion Detection Methods and Tools for Distributed Energy Resources

Recent trends in the growth of distributed energy resources (DER) in the electric grid and newfound malware frameworks that target internet of things (IoT) devices is driving an urgent need for more reliable and effective methods for intrusion detection and prevention. Cybersecurity intrusion detection systems (IDSs) are responsible for detecting threats by monitoring and analyzing network data, which can originate either from networking equipment or end-devices. Creating intrusion detection systems for PV/DER networks is a challenging undertaking because of the diversity of the attack types and intermittency and variability in the data. Distinguishing malicious events from other sources of anomalies or system faults is particularly difficult. New approaches are needed that not only sense anomalies in the power system but also determine causational factors for the detected events. In this report, a range of IDS approaches were summarized along with their pros and cons. Using the review of IDS approaches and subsequent gap analysis for application to DER systems, a preliminary hybrid IDS approach to protect PV/DER communications is formed in the conclusion of this report to inform ongoing and future research regarding the cybersecurity and resilience enhancement of DER systems.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Displacement driven balancing of a diamond turning machine flycutter

The spindle balancing operation is critical to the performance of precision lathes and should be conducted anytime the configuration of the spindle or its tooling is modified such that an unbalanced condition may occur. Within the machine tool community, accelerometers are typically used as the feedback device during the balancing operation. At Lawrence Livermore National Laboratory (LLNL), we have nearly 40 years of history using displacement sensors, such as capacitance gauges, in place of accelerometers when balancing precision spindles. The process of balancing a precision machine spindle using displacement sensors is presented in the context of two work examples. In this case, the details of the one-dimensional balancing operation performed after replacing a flycutter on the spindles of two unique large optic diamond turning machines is discussed. The pros and cons of accelerometer driven balancing and displacement driven balancing are also presented. In the accelerometer context, the level of balance achieved for our work example is less than 100 micro-g or a total indicator reading (TIR) of 1.6 µm. The process of balancing has been enhanced over the years as advances have been made in software, data acquisition systems, and instrumentation. The balancing system is described including details about instrumentation, set-up, how phase and spindle structure stiffness is calculated, and how the LLNL developed software that guides the user through the process by suggesting corrective action.

42 ENGINEERING↗

Energy Assessment of the Yucatan Peninsula: Pathways to a Clean and Sustainable Energy System; Evaluación Energética de la Península de Yucatán: Vías para un Sistema Energético Limpio y Sustentable

Quintana Roo - for prioritization and future technical assistance from the 21st Century Power Partnership (21CPP) program, in Mexico including data gathering, capacity building, modelling and analysis, program and policy setting to help the states and the region overall best utilize its resources to meet its electricity needs while implementing energy efficiency measures towards a more sustainable, clean, reliable system with lower prices.; Este trabajo tiene como objetivo brindar información a los estados de la península de Yucatán - Yucatán, Campeche y Quintana Roo - para priorizar y dar asistencia técnica futura del programa 21st Century Power Partnership (21CPP), en México, incluyendo recolección de datos, desarrollo de capacidades, modelación y análisis, y el establecimiento de programas y políticas para ayudar a los estados y la región en general a utilizar mejor sus recursos, para satisfacer sus necesidades de energía eléctrica, implementando también medidas de eficiencia energética para obtener un sistema más sustentable, limpio y confiable con precios más bajos. This report is also available in English: https://www.nrel.gov/docs/fy21osti/79680.pdf.

21CPP↗

Technology assessment to reduce aerosol transmission risk in naturally ventilated K12 classrooms (CRADA Final Report)

LBNL provided technical assistance to Oakland Unified School District (OUSD) through this project in their selection of technologies to support in-person instruction. OUSD considered different technologies to mitigate the aerosol transmission risks of COVID-19: a) Upgrade to higher efficiency air filters in buildings that are served by heating, ventilation, and air conditioning (HVAC) systems. b) Install portable air cleaners with HEPA (high efficiency particulate air) filters. c) Install ultraviolet germicidal irradiation (UVGI) systems. d) Install bipolar ionization air cleaning systems. LBNL met with OUSD facilities staff to discuss the pros and cons of options a) and c), and cited the lack of proven data on efficacy and discouraged option d). LBNL provided practical guidance on how to select portable air cleaners for classrooms. LBNL met with the boarder school communities to explain OUSD approach to ventilation and filtration, and produced FAQs to answer their questions about the science behind the selected approaches. In addition, LBNL helped OUSD facilities staff to acquire five indoor air quality (IAQ) monitors (AirVisual Pro by IQAir) for measuring carbon dioxide (CO2) and particulate matter (PM) concentrations. These monitors were installed in an elementary school in West Oakland.

60 APPLIED LIFE SCIENCES↗

Radiation Effects on Line Heat Detection Cable AP Hot Cells Fire Detection at Brookhaven National Laboratory

Hot cells are used to safely shield workers from high radiation environments while allowing a process to take place within the cell's shielded enclosure, often with the assistance of remote manipulators. The interior of a cell may not be accessible by personnel for years at a time, either due to the lingering radiation environment or due to the constant use of these specialized pieces of equipment. High radiation levels are known to cause undesirable effects and changes to different materials in varying degrees. Selecting equipment for a radiation environment requires an evaluation of materials used (preferably completed assembles), to ensure all interactions of materials are known and ensure that the equipment will have a high degree of reliability and functionality over the intended life of the facility. Hot cells contain systems to support the primary purpose of the enclosure. Fire detection is one such support system. Safety of hot cell operations often establish limits on the amounts of combustibles with the cells, but the presence of some combustible materials is unavoidable. Fire detection is provided to quickly detect a fire and summon manual intervention before damage is too great. Detection may also be used to initiate fire suppression systems. As a safety system, fire detection needs to remain functional to protect the facility throughout the facility's life. Equally important is that the false alarms from the fire detection are minimized to retain confidence in the alarm system and avoid unnecessary interruptions in the hot cell operations. There are many types of fire detection available with various pros and cons. Not all types of fire detection are suited for hot cell application.

36 MATERIALS SCIENCE↗

Software Verification Toolkit (SVT): Survey on Available Software Verification Tools and Future Direction

Writing software is difficult. However, writing complex, well tested and designed, and functionally correct software is incredibly difficult. An entire field of study is devoted to the validation and verification of software to address this problem, and in this paper we analyze the landscape of currently available third party software. We have divided our analyses into three separate subsections with regards to software validation: formal methods, static analysis, and test generation. Formal verification is the most complex method in which to validate software correctness, but also the most thorough as it truly validates the mathematical validity of the source code. Static analysis generally is relegated to abstract syntax tree traversal techniques to find errors related to faulty software such as memory leaks or stack overflow issues. Automatic test generation is similar in implementation to static analysis, but pushes a bit further in verifying the boundedness of function inputs and outputs with regards to annotated or parsed criteria. The crux of this report is to analyze and describe the software tools that implement these techniques to validate and verify software. Pros and cons related to installation, utilization, and capabilities of the frameworks are described, and reproducible examples are provided with a focus on usability. The initial survey concluded that the most interesting tools of note are Z3, Isabelle/HOL, and TLA+ with regards to formal verification; and Infer, Frama-C, and SonarQube with regards to static analysis. With these tools in mind, a final conjecture is provided that describes future avenues of utilizing these tools for developing a verification framework to assist in validating existing software at Sandia National Laboratories.

97 MATHEMATICS AND COMPUTING↗