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NASA NTRS2016

IN13B-1660: Analytics and Visualization Pipelines for Big Data on the NASA Earth Exchange (NEX) and OpenNEX

We are developing capabilities for an integrated petabyte-scale Earth science collaborative analysis and visualization environment. The ultimate goal is to deploy this environment within the NASA Earth Exchange (NEX) and OpenNEX in order to enhance existing science data production pipelines in both high-performance computing (HPC) and cloud environments. Bridging of HPC and cloud is a fairly new concept under active research and this system significantly enhances the ability of the scientific community to accelerate analysis and visualization of Earth science data from NASA missions, model outputs and other sources. We have developed a web-based system that seamlessly interfaces with both high-performance computing (HPC) and cloud environments, providing tools that enable science teams to develop and deploy large-scale analysis, visualization and QA pipelines of both the production process and the data products, and enable sharing results with the community. Our project is developed in several stages each addressing separate challenge - workflow integration, parallel execution in either cloud or HPC environments and big-data analytics or visualization. This work benefits a number of existing and upcoming projects supported by NEX, such as the Web Enabled Landsat Data (WELD), where we are developing a new QA pipeline for the 25PB system.

visualization↗

DOE OSTI2017

Performance Analysis of Large Scale HPC Workflows for Earth System Models

Climate assessment reports, such as the Intergovernmental Panel on Climate Change’s 5th assesment report [IPCC AR5; IPCC et al., 2014] or the United States National Climate Assessment [U.S. Global Change Research Program, 2014], increasingly rely on many-ensemble climate projections from fully-coupled Earth system models (ESM) to asses possible future climate states. ESM participate in a large set of Coupled Model Intercomparson Projects (CMIP) to better understand their models and the climate system, so that they may provide credible climate projections. However, fully participating in these intercomparison exercises represents an extremely large computational personnel burden for modeling centers [Eyring et al., 2016, Williams et al., 2016a]. However, there has been little attention within the climate modeling community paid to the in situ performance of ESMs up until now. Recently a computational performance model intercomparison project (CPMIP) for CMIP6 has begun [Balaji et al., 2017], but there has not yet been an effort to gather, process, and analyze the historical performance data that has been saved within archived log files from previous modeling efforts, nor the development of performance analysis system capable of providing detailed statistical analyses or visualizations of this performance data. Therefore, we’ve begun a joint effort to analyze the historical and current performance data on both GFDL and OLCF modeling systems. Here, we have developed a preliminary performance analysis system to captue, analyize, and visualize end-to-end in situ performance data and applied it to NOAA/GFDL’s post-processing system. Through the course of the project a number of performance improvements have been made, with the steps necessary to handle the expected volume of data (Big Data) likely to come out of the CMIP6 exercises (TB to PB) provided. We have also begun developing a statistical workload model that will allow modeling centers to determined their expected scientific throughput in the context of expected resource (computational and personnel) availability and accounting for typical workflow disruptions. This will allow them to develop a CMIP participation strategy and maximize their level of participation in the exercises. We expect this infrastructure, and the data it produces, to ultimately allow us to identify performance issues and workflow errors that exist across Earth system modeling centers, and possibly HPC modeling centers in general. Center-independent solutions to workflow or performance issues would help alleviate the computational burden for CMIP6+ modeling projects and should realize both labor and cost savings benefits throughout the CMIP community.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Extreme-Scale Distribution-Based Data Analysis

Scientists overview and identify regions of interest by transforming data into compact information descriptors that characterize simulation results and allow detailed analysis on demand. Among many existing feature descriptors, statistical information derived from data samples is a promising approach to taming the big data avalanche because data distributionscomputed from a population can compactly describe the presence and characteristics of salient data features with minimal data movement. The ability to computationally summarize and process data using distributions also provides an efficient and representative capture of information that can adjust to size and resource constraints, with the added benefit that uncertainty associated with results can be quantified and communicated. In this project, we have developed a distribution-based data analysis and visualization framework for optimizing in situ processing and analysis of extreme-scale scientific data.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Spatiotemporal Pattern Recognition in the PMU Signals in the WECC system

Phasor measurement unit (PMU) data has been used by multiple power system applications, including state estimation, post event analysis, oscillation detection, model validation, and many others. Still, due to its big data nature and availability to general research institutions, comprehensive understanding of the spatiotemporal patterns and underlying mechanisms are incomplete. This study applies a set of signal processing and machine learning approaches aiming at deciphering the characteristic behaviors of multiple phasor measurement units (PMUs) attributes (e.g., voltage, frequency, rate of change of frequency, phase angle), including their auto-correlation, cross-dependence, similarities and discrepancies across units and temporal scales, and distributions of anomalies and their linkages to potential external factors such as weather events. Data analytics are applied to PMUs from the U.S. Western Electricity Coordinating Council (WECC) system. The PMU measurements, recorded events, outages, and weather extremes are all from real world datasets. The findings from the study and mechanistic understanding of the PMU dynamics help provide guidance on system control or preventing blackouts. The derived metrics can be directly used for adjusting or filtering simulated PMU data used for advanced algorithm development.

Hou, Zhangshuan↗

DOE OSTI2021

X-composer: enabling cross-environments in-situ workflows between HPC and cloud

As large-scale scientific simulations and big data analyses become more popular, it is increasingly more expensive to store huge amounts of raw simulation results to perform post-analysis. To minimize the expensive data I/O, "in-situ" analysis is a promising approach, where data analysis applications analyze the simulation generated data on the fly without storing it first. However, it is challenging to organize, transform, and transport data at scales between two semantically different ecosystems due to the distinct software and hardware difference. To tackle these challenges, we design and implement the X-Composer framework. X-Composer connects cross-ecosystem applications to form an "in-situ" scientific workflow, and provides a unified approach and recipe for supporting such hybrid in-situ workflows on distributed heterogeneous resources. X-Composer reorganizes simulation data as continuous data streams and feeds them seamlessly into the Cloud-based stream processing services to minimize I/O overheads. For evaluation, we use X-Composer to set up and execute a cross-ecosystem workflow, which consists of a parallel Computational Fluid Dynamics simulation running on HPC, and a distributed Dynamic Mode Decomposition analysis application running on Cloud. Our experimental results show that X-Composer can seamlessly couple HPC and Big Data jobs in their own native environments, achieve good scalability, and provide high-fidelity analytics for ongoing simulations in real-time.

Wang, Dali↗

DOE OSTI2015

Towards adaptive, streaming analysis of x-ray tomography data

Temporal and spatial resolution of chemical imaging methodologies such as x-ray tomography are rapidly increasing, leading to more complex experimental procedures and fast growing data volumes. Automated analysis pipelines and big data analytics are becoming essential to effectively evaluate the results of such experiments. Offering those data techniques in an adaptive, streaming environment can further substantially improve the scientific discovery process, by enabling experimental control and steering based on the evaluation of emerging phenomena as they are observed by the experiment. Pacific Northwest National Laboratory (PNNL)’ Chemical Imaging Initiative (CII - http://imaging.pnnl.gov/ ) has worked since 2011 towards developing a framework that allows users to rapidly compose and customize high throughput experimental analysis pipelines for multiple instrument types. The framework, named ‘Rapid Experimental Analysis’ (REXAN) Framework [1], is based on the idea of reusable component libraries and utilizes the PNNL developed collaborative data management and analysis environment ‘Velo’, to provide a user friendly analysis and data management environment for experimental facilities. This article will, discuss the capabilities established for X-Ray tomography, discuss lessons learned, and provide an overview of our more recent work in the Analysis in Motion Initiative (AIM - http://aim.pnnl.gov/ ) at PNNL to provide REXAN capabilities in a streaming environment.

analysis framework↗

DOE OSTI2024

Automating galaxy morphology classification using k -nearest neighbours and non-parametric statistics

ABSTRACT Morphology is a fundamental property of any galaxy population. It is a major indicator of the physical processes that drive galaxy evolution and in turn the evolution of the entire Universe. Historically, galaxy images were visually classified by trained experts. However, in the era of big data, more efficient techniques are required. In this work, we present a k-nearest neighbours based approach that utilizes non-parametric morphological quantities to classify galaxy morphology in Sloan Digital Sky Survey images. Most previous studies used only a handful of morphological parameters to identify galaxy types. In contrast, we explore 1023 morphological spaces (defined by up to 10 non-parametric statistics) to find the best combination of morphological parameters. Additionally, while most previous studies broadly classified galaxies into early types and late types or ellipticals, spirals, and irregular galaxies, we classify galaxies into 11 morphological types with an average accuracy of ${\sim} 80\!-\!90 \, {{\rm per\, cent}}$ per T-type. Our method is simple, easy to implement, and is robust to varying sizes and compositions of the training and test samples. Preliminary results on the performance of our technique on deeper images from the Hyper Suprime-Cam Subaru Strategic Survey reveal that an extension of our method to modern surveys with better imaging capabilities might be possible.

Mukundan, Kavya↗

DOE OSTI2018

Harnessing Data Movement in Virtual Clusters for In-Situ Execution

As a result of increasing data volume and velocity, Big Data science at exascale has shifted towards the in-situ paradigm, where large scale simulations run concurrently alongside data analytics. With in-situ, data generated from simulations can be processed while still in memory, thereby avoiding the slow storage bottleneck. However, running simulations and analytics together on shared resources will likely result in substantial contention if left unmanaged, as demonstrated in this work, leading to much reduced efficiency of simulations and analytics. Recently, virtualization technologies such as Linux containers have been widely applied to data centers and physical clusters to provide highly efficient and elastic resource provisioning for consolidated workloads including scientific simulations and data analytics. In this paper, we investigate to facilitate network traffic manipulation and reduce mutual interference on the network for in-situ applications in virtual clusters. In order to dynamically allocate the network bandwidth when it is needed, we adopt SARIMA-based techniques to analyze and predict MPI traffic issued from simulations. Although this can be an effective technique, the naïve usage of network virtualization can lead to performance degradation for bursty asynchronous transmissions within an MPI job. Here, we analyze and resolve this performance degradation in virtual clusters.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

Striped Data Analysis Framework

Traditionally, High Energy data analysis is based on the model where data are stored in files and analyzed by running multiple analysis processes, each reading one or more of the data files. This process involves repeated data reduction step, which produces smaller files, which is time consuming and leads to data duplication. We propose an alternative approach to data storage and analysis, based on the Big Data technologies. The idea is to store each element of data once and only once in a distributed scalable database and analyze data by reading only "interesting" pieces of data from the database. To make this approach possible, we developed columnar Striped Data Representation Format as the basis of the framework. Traditional columnar approach allows for efficient analysis of complex data structures. While keeping all the benefits of columnar data representation, striped mechanism goes further by enabling efficient parallelization of computations and flexible dist ribution of data analysis. The framework includes scalable and elastic data storage, compute and user analysis backend components. The framework uses off-the shelf web services and data caching technologies as the compute/data co-location mechanism. Flexible architecture allows the framework run in the cloud using container technologies. The framework offers Python/Jupyter as the user analysis backend platform, but can also run in command line or batch mode. In the article, we will present the results of the FNAL-LDRD-2016-032 FNAL LDRD project, the design, implementation, features and performance characteristics of the Striped Data Analysis Framework.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2017

Measuring Filament Orientation: A New Quantitative, Local Approach

The relative orientation between filamentary structures in molecular clouds and the ambient magnetic field provides insight into filament formation and stability. To calculate the relative orientation, a measurement of filament orientation is first required. We propose a new method to calculate the orientation of the one-pixel-wide filament skeleton that is output by filament identification algorithms such as filfinder. We derive the local filament orientation from the direction of the intensity gradient in the skeleton image using the Sobel filter and a few simple post-processing steps. We call this the “Sobel-gradient method.” The resulting filament orientation map can be compared quantitatively on a local scale with the magnetic field orientation map to then find the relative orientation of the filament with respect to the magnetic field at each point along the filament. It can also be used for constructing radial profiles for filament width fitting. The proposed method facilitates automation in analyses of filament skeletons, which is imperative in this era of “big data.”.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2018

Machine Learning to Improve Retrieval by Category in Big Volunteered Geodata

Nowadays, Volunteered Geographic Information (VGI) is commonly used in research and practical applications. However, the quality assurance of such a geographic data remains a problem. In this study we use machine learning and natural language processing to improve record retrieval by category (e.g. restaurant, museum, etc.) from Wikimapia Points of Interest data. We use textual information contained in VGI records to evaluate its ability to determine the category label. The performance of the trained classifier is evaluated on the complete dataset and then is compared with its performance on regional subsets. Preliminary analysis shows significant difference in the classifier performance across the regions. Such geographic differences will have a significant effect on data enrichment efforts such as labeling entities with missing categories.

Sorokine, Alexandre↗

NASA NTRS2019

Sherlock Data Warehouse

This slide deck provides an overview of the data and resources available in the Sherlock Data Warehouse. Sherlock was developed and is currently maintained by the Aviation Systems Division at NASA Ames Research Center. Sherlock contains a valuable collection of flight, air traffic management, and weather data. But Sherlock is not just a data archive. Sherlock also includes tools and resources to access, download, and visualize data, as well as resources to process the data. This overview summarizes Sherlock data sources, demonstrates data analytics and visualization with MicroStrategy, illustrates disparate data integration using the ATM Knowledge graph, and presents a machine learning use case using the Big Data system.

data warehouse↗

DOE OSTI2017

Why wait? Let's start computing while data is still on the wire

In this era of Big Data, computing useful information from data is becoming increasingly complicated, particularly due to the ever increasing volumes of data that need to travel over the network to data centers to be stored and processed, all highly expensive operations in the long haul. In this paper we suggest that we can do computing and analysis of data "on the wire," i.e., while data is still in transit. The nature of these computations include analysis, visualization, pattern recognition, and prediction, or forecasting, on the streaming data. We follow a service function chaining architecture to implement this, assuming that the data packets arrive within a single network administrative domain. As a demonstration of this new computing paradigm, we present three examples. Firstly, we demonstrate pattern recognition and data visualization on streaming forex data, which can be used for lucrative trading in the forex market. In our second example, we analyze and learn user buying patterns from clickstream data streaming from multiple websites. Finally, we monitor solar sensors for a zero reading while the packets are still on their way to the data center, to schedule any maintenance and requisite repairs with no time delay.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Distributed Machine Learning Workflow with PanDA and iDDS in LHC ATLAS

Machine Learning (ML) has become one of the important tools for High Energy Physics analysis. As the size of the dataset increases at the Large Hadron Collider (LHC), and at the same time the search spaces become bigger and bigger in order to exploit the physics potentials, more and more computing resources are required for processing these ML tasks. In addition, complex advanced ML workflows are developed in which one task may depend on the results of previous tasks. How to make use of vast distributed CPUs/GPUs in WLCG for these big complex ML tasks has become a popular research area. In this paper, we present our efforts enabling the execution of distributed ML workflows on the Production and Distributed Analysis (PanDA) system and intelligent Data Delivery Service (iDDS). First, we describe how PanDA and iDDS deal with large-scale ML workflows, including the implementation to process workloads on diverse and geographically distributed computing resources. Next, we report real-world use cases, such as HyperParameter Optimization, Monte Carlo Toy confidence limits calculation, and Active Learning. Finally, we conclude with future plans.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2015

Leveraging AMI data for distribution system model calibration and situational awareness

The many new distributed energy resources being installed at the distribution system level require increased visibility into system operations that will be enabled by distribution system state estimation (DSSE) and situational awareness applications. Reliable and accurate DSSE requires both robust methods for managing the big data provided by smart meters and quality distribution system models. This paper presents intelligent methods for detecting and dealing with missing or inaccurate smart meter data, as well as the ways to process the data for different applications. It also presents an efficient and flexible parameter estimation method based on the voltage drop equation and regression analysis to enhance distribution system model accuracy. Finally, it presents a 3-D graphical user interface for advanced visualization of the system state and events. Moreover, we demonstrate this paper for a university distribution network with the state-of-the-art real-time and historical smart meter data infrastructure.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2019

Strong SUSY at ATLAS and CMS [PowerPoint]

Introduction points: LHC performed very well, delivering > 150 fb -1 ; Huge challenge to quickly process this amount of data; Understand detector & object performance; pT miss tails very important for SUSY searches; Most results on full Run 2 data set will come in Summer; SUSY searches are expanding; Big inclusive searches complemented by dedicated searches to close gaps in coverage; Machine learning for H, b, c, top,… tagging; and Improved analysis techniques

43 PARTICLE ACCELERATORS↗

NASA NTRS2014

Earth Science Data Analysis in the Era of Big Data

Anyone with even a cursory interest in information technology cannot help but recognize that "Big Data" is one of the most fashionable catchphrases of late. From accurate voice and facial recognition, language translation, and airfare prediction and comparison, to monitoring the real-time spread of flu, Big Data techniques have been applied to many seemingly intractable problems with spectacular successes. They appear to be a rewarding way to approach many currently unsolved problems. Few fields of research can claim a longer history with problems involving voluminous data than Earth science. The problems we are facing today with our Earth's future are more complex and carry potentially graver consequences than the examples given above. How has our climate changed? Beside natural variations, what is causing these changes? What are the processes involved and through what mechanisms are these connected? How will they impact life as we know it? In attempts to answer these questions, we have resorted to observations and numerical simulations with ever-finer resolutions, which continue to feed the "data deluge." Plausibly, many Earth scientists are wondering: How will Big Data technologies benefit Earth science research? As an example from the global water cycle, one subdomain among many in Earth science, how would these technologies accelerate the analysis of decades of global precipitation to ascertain the changes in its characteristics, to validate these changes in predictive climate models, and to infer the implications of these changes to ecosystems, economies, and public health? Earth science researchers need a viable way to harness the power of Big Data technologies to analyze large volumes and varieties of data with velocity and veracity. Beyond providing speedy data analysis capabilities, Big Data technologies can also play a crucial, albeit indirect, role in boosting scientific productivity by facilitating effective collaboration within an analysis environment. To illustrate the effects of combining a Big Data technology with an effective means of collaboration, we relate the (fictitious) experience of an early-career Earth science researcher a few years beyond the present, interlaced and contrasted with reminiscences of its recent past (i.e., the present).

Kuo, K.-S.↗

DOE OSTI2013

Simulation and big data challenges in tuning building energy models

EnergyPlus is the flagship building energy simulation software used to model whole building energy consumption for residential and commercial establishments. A typical input to the program often has hundreds, sometimes thousands of parameters which are typically tweaked by a buildings expert to “get it right”. This process can sometimes take months. “Autotune” is an ongoing research effort employing machine learning techniques to automate the tuning of the input parameters for an EnergyPlus input description of a building. Even with automation, the computational challenge faced to run the tuning simulation ensemble is daunting and requires the use of supercomputers to make it tractable in time. In this paper, we describe the scope of the problem, particularly the technical challenges faced and overcome, and the software infrastructure developed/in development when taking the EnergyPlus engine, which was primarily designed to run on desktops, and scaling it to run on shared memory supercomputers (Nautilus) and distributed memory supercomputers (Frost and Titan). The parametric simulations produce data in the order of tens to a couple of hundred terabytes. We describe the approaches employed to streamline and reduce bottlenecks in the workflow for this data, which is subsequently being made available for the tuning effort as well as made available publicly for open-science.

Sanyal, Jibonananda↗