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Results for “unknown unknowns”
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Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability
Abstract Background Rock-dwelling microorganisms are key players in ecosystem functioning of Antarctic ice free-areas. Yet, little is known about their diversity and ecology, and further still, viruses in these communities have been largely unexplored despite important roles related to host metabolism and nutrient cycling. To begin to address this, we present a large-scale viral catalog from Antarctic rock microbial communities. Results We performed metagenomic analyses on rocks from across Antarctica representing a broad range of environmental and spatial conditions, and which resulted in a predicted viral catalog comprising > 75,000 viral operational taxonomic units (vOTUS). We found largely undescribed, highly diverse and spatially structured virus communities which had predicted auxiliary metabolic genes (AMGs) with functions indicating that they may be potentially influencing bacterial adaptation and biogeochemistry. Conclusion This catalog lays the foundation for expanding knowledge of virosphere diversity, function, spatial ecology, and dynamics in extreme environments. This work serves as a step towards exploring adaptability of microbial communities in the face of a changing climate.
Analysis of Radiocarbon, Stable Isotopes and DNA in Teeth to Facilitate Identification of Unknown Decedents
The characterization of unidentified bodies or suspected human remains is a frequent and important task for forensic investigators. However, any identification method requires clues to the person’s identity to allow for comparisons with missing persons. If such clues are lacking, information about the year of birth, sex and geographic origin of the victim, is particularly helpful to aid in the identification casework and limit the search for possible matches. We present here results of stable isotope analysis of 13 C and 18 O, and bomb-pulse 14 C analyses that can help in the casework. The 14 C analysis of enamel provided information of the year of birth with an average absolute error of 1.8±1.3 years. We also found that analysis of enamel and root from the same tooth can be used to determine if the 14 C values match the rising or falling part of the bomb-curve. Enamel laydown times can be used to estimate the date of birth of individuals, but here we show that this detour is unnecessary when using a large set of crude 14 C data of tooth enamel as a reference. The levels of 13 C in tooth enamel were higher in North America than in teeth from Europe and Asia, and Mexican teeth showed even higher levels than those from USA. DNA analysis was performed on 28 teeth, and provided individual-specific profiles in most cases and sex determination in all cases. In conclusion, these analyses can dramatically limit the number of possible matches and hence facilitate person identification work.
The Arabidopsis domain of unknown function 1218 (DUF1218) containing proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) function redundantly to alter secondary cell wall lignin content
DUF1218 is a land plant-specific innovation and has previously been shown to be associated with cell wall biology, vasculature patterning and abiotic/biotic stress response. The Arabidopsis genome encodes 15 members, two of which (At1g31720 and At4g27435) are preferentially expressed in the secondary cell wall depositing inflorescence stems. To further our understanding of the roles of DUF1218-containing proteins in secondary cell wall biology, we functionally characterized At1g31720 (herein referred to as MODIFYING WALL LIGNIN -1 or MWL -1). Since related gene family members may contribute to functional redundancy, we also characterized At4g19370 ( MWL -2), the most closely related gene to MWL -1 in the protein family. Subcellular localization revealed that both Arabidopsis proteins are targeted to the cell periphery. The single T-DNA knockout lines, mwl -1 and mwl -2, and independent overexpression lines showed no significant differences in plant growth or changes in total lignin content relative to wild-type (WT) control plants. However, the double homozygous mutant, mwl -1/ mwl -2, had smaller rosettes with a significant decrease in rosette fresh weight and stem height relative to the WT control at four weeks and six weeks, respectively. Moreover, mwl -1/ mwl -2 showed a significant reduction in total lignin content (by ca. 11% relative to WT) and an increase in syringyl/guaiacyl (S/G) monomer ratio relative to the control plants. Lastly, our study has identified two additional members of the DUF1218 family in Arabidopsis as novel contributors to secondary cell wall biology, specifically lignin biosynthesis, and these proteins appear to function redundantly.
Nonnegative Matrix Factorization for identification of unknown number of sources emitting delayed signals
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Taking Arrays from the Lab to the Field: Trying to Make Sense of the Unknown
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Exploring the unknown Lambda-neutron interaction
No published \Lambda Λ n scattering data exist. A relativistic heavy-ion experiment has suggested that a \Lambda Λ nn bound state was seen. However, several theoretical analyses have cast serious doubt on the bound-state assertion. Nevertheless, there could exist a three-body \Lambda Λ nn resonance. Such a resonance could be used to constrain the \Lambda Λ n interaction. We discuss \Lambda Λ nn calculations using nn and \Lambda Λ n pairwise interactions of rank-one, separable form that fit effective range parameters of the nn system and those hypothesized for the as yet unobserved \Lambda Λ n system based upon four different \Lambda Λ N potentials. The use of rank-one separable potentials allows one to analytically continue the \Lambda Λ nn Faddeev equations onto the second complex energy plane in search of resonance poles, by examining the eigenvalue spectrum of the kernel of the Faddeev equations. Although each of the potential models predicts a \Lambda Λ nn sub-threshold resonance pole, scaling of the \Lambda Λ n interaction by as little as \sim ∼ 5% does produce a physical resonance. This suggests that one may use photo-(electro-)production of the \Lambda Λ nn system from tritium as a tool to examine the strength of the \Lambda Λ n interaction.
Measurements Conducted on an Unknown Object Labeled Pu-239
Measurements were carried out on 12 November 2013 to determine whether Pu-239 was present on an object discovered in a plastic bag with label “Pu-239 6 uCi.” Following initial survey measurements to verify that the object was not leaking or contaminated, spectra were collected with a High Purity Germanium (HPGe) detector with object positioned in two different configurations. Analysis of the spectra did not yield any direct evidence of Pu-239. From the measured spectra, minimum detectable activity (MDA) was determined to be approximately 2 uCi for the gamma-ray measurements. Although there was no direct evidence of Pu-239, a peak at 60 keV characteristic of Am-241 decay was observed. Since it is very likely that Am-241 would be present in aged plutonium samples, this was interpreted as indirect evidence for the presence of plutonium on the object. Analysis of this peak led to an estimated Pu-239 activity of 0.02–0.04 uCi, or <1x10 -6 grams.
Adapting the M3 Surveillance Metrics for an Unknown Baseline
The original M 3 surveillance metrics assume that the baseline is known. In this article, adapted M 3 metrics are presented when the baseline is not known and estimated by available data. Deciding on how much available data is enough is also discussed.
L2 Milestone: Neutron Capture Cross Sections from Surrogate (p, d) Measurements: Determination of the Unknown 87 Y(n, g) Cross Section and Assessment of the Method Via the 90 Zr(n, g) Benchmark Case: Theory Report
Cross sections for compound-nuclear reactions involving unstable targets are important for many applications, but can often not be measured directly. Here we describe a method for extracting cross sections for neutron-capture on unstable isotopes from indirect (surrogate) measurements. The surrogate reaction, which produces the compound nucleus of interest, has to be described and the decay of the nucleus has to be modeled. We outline the approach for one-neutron pickup and report on the determination of the 90 Zr(n, γ ) reaction from surrogate 92 Zr(p,d) data, which is compared to the directly-measured capture cross section and thus provides a benchmark for the method. We then apply the method to determine the 87 Y(n, γ ) cross section, which has not been measured directly. The work was carried out in the context of an LLNL L2 Milestone. This report addresses the theory aspects of the milestone. A complementary document summarizes the experimental efforts [1].
CHEMICAL SIGNATURES FOR UNKNOWN AND INTERDICTED SAMPLES IN THE ENVIRONMENT FOR NUCLEAR FORENSIC ANALYSIS
Abstract not provided
A Universe of Unknowns: Dark Matter and Dark Energy [Slides]
Abstract not provided.
Top 12 assumptions about bifacial: addressing the unknowns with data
Conference presentations about the top 12 assumptions made about bifacial performance.
Pushing the Limits of High-speed X-ray Tomography to See the Unknown
First-of-their kind datasets from a high-speed X-ray tomography system were collected, and a novel numerical effort utilizing temporal information to reduce measurement uncertainty was shown. The experimental campaign used three high-speed X-ray imaging systems to collect data at 100 kHz of a scene containing high-velocity objects. The scene was a group of known objects propelled by a 12-gauge shotgun shell reaching speeds of hundreds of meters per second. These data represent a known volume where the individual components are known, with experimental uncertainties that can be used for reconstruction algorithm validation. The numerical effort used synthetic volumes in MATLAB to produce projections along known lines of sight to perform tomographic reconstructions. These projections and reconstructions were performed on a single object at two orientations, representing two timesteps, to increase the reconstruction accuracy.
Top 12 assumptions about bifacial: addressing the unknowns with dat
This conference presentation covers common assumptions about bifacial PV module performance that can be better understood through empirical data from PVEL's DOE-funded research.
Quantifying the Unknown: Impact of Segmentation Uncertainty on Image-based Simulations.
Abstract not provided.
Benchmark and Assessment of the Surrogate Reaction Method for Determining Unknown (n,n') and (n,2n) Reaction Cross Sections
A new approach for determining (n,n' ) and (n,2n) cross sections from a combination of indirect measurements and theory is presented. The method builds on and significantly extends the surrogate reactions framework developed at LLNL. Multiple theory advances are described and the overall approach is demonstrated through an application to benchmark cross sections. The work addresses nuclear data needs of the Stockpile Stewardship Program (SSP) and this report comprises multiple completion criteria for an ASC/PEM Level-2 milestone.