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The g-code file

The slicing process for additive manufacturing (AM) involves many steps, including slicing the object to be printed and fitting toolpaths to each resulting layer. The toolpaths define the trajectories that the machine must follow during printing to construct the object. Once the slicing is complete and all toolpaths have been found and properly planned, this data must be transferred to the 3D printer in a way the printer can use to construct the object. This is achieved by exporting a file, usually a g-code file, from the slicing software. The g-code file is a text-based file that contains instructions for the machine, controlling the system and defining the motions for each toolpath. The file, which often contains thousands of lines of code, is mostly composed of numbers that command positions for axis motions. This chapter will outline the contents of a g-code file, discuss various commands and their implementation, then provide example codes and files for object construction.

Roschli, Alex↗

Comparison of automated chemical-guided segmentation and human annotation of soil organic matter in X-ray microcomputed tomography imaging in contrasted soil types

Soil organic matter (OM) formation and persistence is strongly influenced by the spatial distribution of organic substrates and microscale soil heterogeneity by dictating OM accessibility to microorganisms. However, traditional size and/or density fractionation techniques disrupt aggregate architecture, eliminating spatial information needed to fully understand intra-aggregate OM distribution. To quantify three-dimensional OM spatial distribution and automate segmentation in X-ray microcomputed tomography (µCT) imaging without human annotation bias, we developed an iodine gas vapor (I2) based staining workflow that eliminates labor-intensive manual annotation while maintaining segmentation accuracy, using aggregates from four taxonomically diverse soils (Xerofluvent, Haploxeroll Sphagnofibrist, Palehumult) with an 8-fold range of soil organic carbon. Human annotation of 10 µCT slices by the experienced and inexperienced annotators resulted in variations up to 3% in the Dice similarity coefficient (DSC), reflecting a degree of inherent subjectivity of manual labeling. Such inconsistencies are expected to compound as the number of manually annotated slices increases. Dual-energy µCT imaging at 33.1 keV (below the iodine (I) K-edge) and 33.2 keV (above the I K-edge) was used to resolve aggregate microstructure following I2 staining. The automated image subtraction pipeline identified OM regions by the I Kedge induced brightness increases, achieving DSC values of 0.58–0.83 relative to an experienced annotator. Sensitivity analyses revealed that the reconstruction alpha value—optimized via the open-source tool TomocuPy—and the 3D registration slice count were the primary determinants of accuracy, providing a novel benchmark for dual-energy soil imaging. The pipeline without GPU acceleration achieved 9.6 to 43.2 times faster than manual annotation. Using GPU-accelerated image post-processing and affine transformation matrices, the pipeline successfully segmented OM elements for large-scale datasets (3232×3232 pixel, 2048 slices) within ~5200 s from raw file acquisition to segmented output. The high-throughput approach enables the quantification of OM spatial distribution across diverse and heterogeneous soil.

Soil microbial biomass↗

Equilibrium core modeling of a pebble bed reactor similar to the Xe-100 with SCALE

As the nuclear industry moves towards licensing and constructing advanced reactors, new attention has been focused on the advanced reactor designs that have past operational experience, such as pebble-bed high-temperature gas-cooled reactors (PB-HTGRs). Pebble-bed reactor designs have many advantages, such as their higher operating temperatures and online refueling capabilities. However, high-fidelity computational modeling of pebble-bed reactor designs, from reactor startup to operation at equilibrium, is more challenging compared to conventionally fueled reactors due to the continuous movement of the fuel pebbles through the reactor during operation. In previous work at Oak Ridge National Laboratory (ORNL), the SCALE Leap-In method for Cores at Equilibrium (SLICE) was developed around tools within the SCALE code system. This iterative method can effectively generate pebble-bed reactor zone-wise fuel inventories at equilibrium core operation within a reasonable computational time. The objective of this work was to further verify the ORNL SLICE method and to investigate the impact of considering temperature profiles during the application of the method. The SLICE method was applied to a modular high-temperature gas-cooled reactor design based upon publicly available design specifications of the Xe-100 pebble-bed reactor. Upon comparing the results from the SLICE method to published literature, the differences in the eigenvalue k effective were on the order of several hundred pcm (percent millirho). To investigate one possible cause of these differences, a study looking at the sensitivity of the full-core equilibrium k effective and discharge nuclide inventory to temperature was performed by developing equilibrium cores of two additional temperature profiles. From this temperature study, differences on the order of hundreds of pcm for the full-core equilibrium k effective , and up to 15% difference for the discharge inventories were found. In conclusion, these results indicated the strong dependence on temperature that needs to be considered for future work in equilibrium modeling of PB-HTGRs.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Response of hypoxia to future climate change is sensitive to methodological assumptions

Climate-induced changes in hypoxia are among the most serious threats facing estuaries, which are among the most productive ecosystems on Earth. Future projections of estuarine hypoxia typically involve long-term multi-decadal continuous simulations or more computationally efficient time slice and delta methods that are restricted to short historical and future periods. We make a first comparison of these three methods by applying a linked terrestrial–estuarine model to the Chesapeake Bay, a large coastal-plain estuary in the eastern United States. Results show that the time slice approach accurately captures the behavior of the continuous approach, indicating a minimal impact of model memory. However, increases in mean annual hypoxic volume by the mid-twenty-first century simulated by the delta approach (+ 19%) are approximately twice as large as the time slice and continuous experiments (+ 9% and + 11%, respectively), indicating an important impact of changes in climate variability. Our findings suggest that system memory and projected changes in climate variability, as well as simulation length and natural variability of system hypoxia, should be considered when deciding to apply the more computationally efficient delta and time slice methods.

54 ENVIRONMENTAL SCIENCES↗

Emittance preservation for the electron arm in a single PWFA-LC stage using quasi-adiabatic plasma density ramp matching sections

Plasma-based acceleration (PBA) is being considered for a next generation linear collider (LC). In some PBA-LC designs for the electron arm, the extreme beam parameters are expected to trigger background ion motion within the witness beam, which can lead to longitudinally varying nonlinear focusing forces and result in an unacceptable emittance growth of the beam. To mitigate this, we propose to use quasi-adiabatic plasma density ramps as matching sections at the entrance and exit of each stage. We match the witness electron beam to the low density plasma entrance, where the beam initially has a large matched spot size so the ion motion effects are relatively small. As the beam propagates in the plasma density upramp, it is quasi-adiabatically focused, and its distribution maintains a non-Gaussian equilibrium distribution in each longitudinal slice throughout the process, even when severe ion collapse has occurred. This only causes small amounts of slice emittance growth. The phase mixing between slices with different betatron frequencies leads to additional projected emittance growth within the acceleration stage. A density downramp at the exit of an acceleration section can eliminate much of the slice and projected emittance growth as the beam and ion motion adiabatically defocuses and decreases, respectively. Simulation results from QuickPIC with Azimuthal Decomposition show that within a single acceleration stage with a 25 GeV energy gain, this concept can limit the projected emittance growth to only ∼2% for a 25 GeV, 100 nm emittance witness beam and ∼20% for a 100 GeV, 100 nm normalized emittance witness beam. The trade-off between the adiabaticity of the plasma density ramp and the initial ion motion at the entrance for a given length of the plasma density ramp is also discussed.

Physics↗

Inferring Viral Transmission Time from Phylogenies for Known Transmission Pairs

When the time of an HIV transmission event is unknown, methods to identify it from virus genetic data can reveal the circumstances that enable transmission. We developed a single-parameter Markov model to infer transmission time from an HIV phylogeny constructed of multiple virus sequences from people in a transmission pair. Our method finds the statistical support for transmission occurring in different possible time slices. We compared our time-slice model results to previously described methods: a tree-based logical transmission interval, a simple parsimony-like rules-based method, and a more complex coalescent model. Across simulations with multiple transmitted lineages, different transmission times relative to the source’s infection, and different sampling times relative to transmission, we found that overall our time-slice model provided accurate and narrower estimates of the time of transmission. We also identified situations when transmission time or direction was difficult to estimate by any method, particularly when transmission occurred long after the source was infected and when sampling occurred long after transmission. Applying our model to real HIV transmission pairs showed some agreement with facts known from the case investigations. We also found, however, that uncertainty on the inferred transmission time was driven more by uncertainty from time calibration of the phylogeny than from the model inference itself. Encouragingly, comparable performance of the Markov time-slice model and the coalescent model—which make use of different information within a tree—suggests that a new method remains to be described that will make full use of the topology and node times for improved transmission time inference.

59 BASIC BIOLOGICAL SCIENCES↗

Seismic response to paleo-sand dunes in the Nugget Sandstone Formation, southwestern Wyoming

We have analyzed a 3D seismic survey acquired for a carbon sequestration project on top of the Moxa Arch in southwestern Wyoming. We observed a zone of discontinuous reflectors on vertical slices of seismic amplitude volume, whereas, the northwest–southeast lineations were observed on the time slices. We performed a seismic to well tie that suggested that the lineations occur within the Nugget Sandstone. The Nugget Sandstone is an eolian sandstone deposit of Early Jurassic age, deposited as a subtropical dune field, and equivalent to the Navajo Sandstone of southwestern Utah. Petrophysical analysis indicates that the Nugget Sandstone is dominated by clean sandstone (70%–80%), whereas evaporites, including halite and anhydrite, are present in certain zones. Previous outcrop studies on the Navajo Sandstone indicate the wind direction to be predominantly northeast–southwest. Seismic attributes, including coherence and curvature, displayed on stratal slices within the Nugget Sandstone interval indicate the presence of lineations in the northwest–southeast direction with irregular spacing. These lineations are approximately perpendicular to the inferred dominant wind direction. We computed the dominant wind direction from the average azimuth of the lineations as seen on the curvature attribute in the Nugget Sandstone interval. Geological feature: Eolian sand dunes with interdunal evaporites Seismic appearance: Parallel lineations with irregular spacing on seismic attribute horizon slices Alternative interpretations: Canyons at continental slopes; slope failures Features with a similar appearance: Marine bars; contourites Formation: The Nugget Sandstone — equivalent to the Navajo Sandstone Age: Early Jurassic Location: Moxa Arch, Wyoming Seismic data: Obtained by the University of Wyoming with U.S. DOE funding Contributors: Dhruv Agrawal, Brady Lujan, Sumit Verma, Shuvajit Bhattacharya, and Subhashis Mallick Analysis tools: Coherence and curvature attributes; seismic inversion; petrophysical inversion

Geochemistry & Geophysics↗

Modeling and Simulation of Xe-100-type Pebble Bed Gas-Cooled Reactor with SCALE

The US Department of Energy (DOE) announced the Advanced Reactor Demonstration Program (ARDP) to accelerate the deployment of advanced reactor concepts. Awardees of ARDP funds are expected to demonstrate the operation of an advanced reactor within 7 years of receiving the award. X-Energy’s advanced reactor concept, the Xe-100, was selected as one of two advanced reactor concepts to receive funding to demonstrate the operation of its high-temperature gas-cooled pebble-bed reactor before the end of this decade. As a result of this push to bring advanced reactors to maturation and commercialization, transition and deployment scenario studies are being performed under the Systems Analysis and Integration (SA&I) campaign within the DOE Office of Nuclear Energy (DOE-NE) to evaluate the transition of the current US commercial fleet of light-water reactors (LWRs) to a future fleet of advanced reactors consisting of a mix of ARDP type reactor concepts and advanced LWRs. To accurately evaluate the front- and back-end resource requirements, it is important to perform reactor physics calculations to determine the discharge burnup and isotopic content, fuel residence time, as well as other parameters. For this purpose, a summer project funded by the SA&I campaign allowed for the setup of SCALE models for full-core Xe-100 type high-temperature gas-cooled pebble-bed reactor and a Xe-100 type slice using publicly available information. The core-averaged equilibrium compositions and zone-wise equilibrium compositions for the slice and 3D models, respectively, were obtained following an iterative depletion method developed by Bostelmann et al. using SCALE’s reactor physics sequence TRITON. The slice model was used with TRITON to generate burnup-dependent cross section libraries at different temperatures which can be used with SCALE’s ORIGAMI code to rapidly determine fuel inventory and therefore to perform quick sensitivity studies on parameters such as the pebble location in the core. The SCALE/TRITON transport and depletion calculation for the Xe-100 type slice model indicates that the isotopic concentrations are in good agreement at 1,300 effective full power days (EFPD) for 235 U. An analysis of 236 U results match 239 Pu results would seem to indicate a typographical error in Mulder and Boyes wherein the reported results of 236 U and 239 Pu are reversed. In addition to SCALE/TRITON calculations, a new capability within SCALE/ORIGAMI for the simulation of pebble-bed reactors was used to study the burnup sensitivity with respect to the pebble pathway through the core. The SCALE/ORIGAMI results show that pebbles that travel closer to the reflector for the entire depletion history have a higher burnup than pebbles that travel through the middle of the core because of the higher thermal to fast flux ratio near the reflector. Consequently, a pebble’s burnup is strongly affected by the pebble’s pathway for each pass. Additional phenomena such as temperature distributions in the core and different travel times of the pebbles in the individual radial zones further affect the burnup distribution. The sensitivity of the discharge vector to the pebble pathways taken during each pass can be evaluated in the future using SCALE/ORIGAMI now that the SCALE inputs have been established.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Remote sensing for detection of soil limitations in agricultural areas.

Research was initiated to establish remote sensing techniques for recognizing and mapping soil limitations to land use. Analysis of soils with limitations to land use because of dense subsoil (claypan) and unfavorable topography (convex sloping or depressional areas) was accomplished by experienced soil scientists utilizing a density slicing system. Maps of soil limitations were produced by photographing the color encoded density slicing analysis of an area. The percentage of each soil limitation was measured by the planimeter feature of the density slicing system. The initial results indicate that a density slicing system has great potential not only for delineating areas of similar soil limitations but also for indicating the percentage composition of an area.

Frazee, C. J.↗

Thin silicon-solar cell fabrication

Flexible silicon slices of uniform thicknesses are fabricated by etching in sodium hydroxide solution. Maintaining uniform thickness across slices during process(fabrication) is important for cell strength and resistance to damage in handling. Slices formed by procedure have reproducible surface with fine orange peel texture, and are far superior to slices prepared by other methods.

Lindmayer, J.↗

Precision cleaver for "soft" crystals

"Soft" crystals are cleaved as thin 0.005 inch with special cleaver. Thin slices of soft crystalline materials are used in X-ray spectrometers. Slices are usually cut by hand with wire or blade. Wire tends to scratch surface and to produce slices of nonuniform thickness. Device will rapidly cut soft crystals in smooth, thin, uniform slices.

Benedicto, J. S. J.↗

Effects of orbital exposure on RTV during the LDEF mission

Thermomechanical analysis (TMA), differential scanning calorimetry (DSC), and thermogravimetric analysis (TGA) were performed on samples of RTV 511 exposed on the Long Duration Exposure Facility (LDEF) mission for 6 years in orbit and unexposed RTV 511 control samples. Slices 20- to 400-microns thick were removed from the exposed surface down to a depth of 1,500 microns through the 3-mm thick samples. The TMA and DSC results, which arise from the entire slice and not just its surface, showed no significant differences between the LDEF exposed and the control samples. TMA scans were run from ambient to 500 C; results were compared by a tabulation of the onset temperatures for flow. DSC scans were run from ambient to 600 C; no endotherms or exotherms occurred over the range observed. What appear to be glass transition temperatures were compared for the samples as a function of section depth within the sample and between the exposed and control samples. The TGA scans from 25 to 900 C, which arise from the surface of the sample initially, showed a slight increase in the top most 105-micron slice (the exposed, discolored side) in the weight loss at 600 C in oxygen. This weight loss dropped to bulk values at the next slice below the top section, a mean depth of 258 microns. The control sample also showed an increase in weight loss as the top surface was approached, but the 600 C weight losses were very inconsistent. The LDEF RTV sample appears to be mechanically undamaged, with a surface layer which oxidizes slightly faster as a result of orbital exposure.

Brower, William E., Jr.↗

Picturing Data With Uncertainty

NASA is in the business of creating maps for scientific purposes to represent important biophysical or geophysical quantities over space and time. For example, maps of surface temperature over the globe tell scientists where and when the Earth is heating up; regional maps of the greenness of vegetation tell scientists where and when plants are photosynthesizing. There is always uncertainty associated with each value in any such map due to various factors. When uncertainty is fully modeled, instead of a single value at each map location, there is a distribution expressing a set of possible outcomes at each location. We consider such distribution data as multi-valued data since it consists of a collection of values about a single variable. Thus, a multi-valued data represents both the map and its uncertainty. We have been working on ways to visualize spatial multi-valued data sets effectively for fields with regularly spaced units or grid cells such as those in NASA's Earth science applications. A new way to display distributions at multiple grid locations is to project the distributions from an individual row, column or other user-selectable straight transect from the 2D domain. First at each grid cell in a given slice (row, column or transect), we compute a smooth density estimate from the underlying data. Such a density estimate for the probability density function (PDF) is generally more useful than a histogram, which is a classic density estimate. Then, the collection of PDFs along a given slice are presented vertically above the slice and form a wall. To minimize occlusion of intersecting slices, the corresponding walls are positioned at the far edges of the boundary. The PDF wall depicts the shapes of the distributions very dearly since peaks represent the modes (or bumps) in the PDFs. We've defined roughness as the number of peaks in the distribution. Roughness is another useful summary information for multimodal distributions. The uncertainty of the multi-valued data can also be interpreted by the number of peaks and the widths of the peaks as shown by the PDF walls.

Kao, David↗

Techniques for Producing Coastal Land Water Masks from Landsat and Other Multispectral Satellite Data

Coastal erosion and land loss continue to threaten many areas in the United States. Landsat data has been used to monitor regional coastal change since the 1970s. Many techniques can be used to produce coastal land water masks, including image classification and density slicing of individual bands or of band ratios. Band ratios used in land water detection include several variations of the Normalized Difference Water Index (NDWI). This poster discusses a study that compares land water masks computed from unsupervised Landsat image classification with masks from density-sliced band ratios and from the Landsat TM band 5. The greater New Orleans area is employed in this study, due to its abundance of coastal habitats and its vulnerability to coastal land loss. Image classification produced the best results based on visual comparison to higher resolution satellite and aerial image displays. However, density sliced NDWI imagery from either near infrared (NIR) and blue bands or from NIR and green bands also produced more effective land water masks than imagery from the density-sliced Landsat TM band 5. NDWI based on NIR and green bands is noteworthy because it allows land water masks to be generated from multispectral satellite sensors without a blue band (e.g., ASTER and Landsat MSS). NDWI techniques also have potential for producing land water masks from coarser scaled satellite data, such as MODIS.

Spruce, Joseph P.↗

Techniques for Producing Coastal Land Water Masks from Landsat and Other Multispectral Satellite Data

Coastal erosion and land loss continue to threaten many areas in the United States. Landsat data has been used to monitor regional coastal change since the 1970's. Many techniques can be used to produce coastal land water masks, including image classification and density slicing of individual bands or of band ratios. Band ratios used in land water detection include several variations of the Normalized Difference Water Index (NDWI). This poster discusses a study that compares land water masks computed from unsupervised Landsat image classification with masks from density-sliced band ratios and from the Landsat TM band 5. The greater New Orleans area is imployed in this study, due to its abundance of coastal habitats and ist vulnerability to coastal land loss. Image classification produced the best results based on visual comparison to higher resolution satellite and aerial image displays. However, density-sliced NDWI imagery from either near infrared (NIR) and blue bands or from NIR and green bands also produced more effective land water masks than imagery from the density-sliced Landsat TM band 5. NDWI based on NIR and green bands is noteworthy because it allows land water masks to be generated form multispectral satellite sensors without a blue band (e.g., ASTER and Landsat MSS). NDWI techniques also have potential for producing land water masks from coarser scaled satellite data, such as MODIS.

Spruce, Joe↗

Algorithms for High-Speed Noninvasive Eye-Tracking System

Two image-data-processing algorithms are essential to the successful operation of a system of electronic hardware and software that noninvasively tracks the direction of a person s gaze in real time. The system was described in High-Speed Noninvasive Eye-Tracking System (NPO-30700) NASA Tech Briefs, Vol. 31, No. 8 (August 2007), page 51. To recapitulate from the cited article: Like prior commercial noninvasive eyetracking systems, this system is based on (1) illumination of an eye by a low-power infrared light-emitting diode (LED); (2) acquisition of video images of the pupil, iris, and cornea in the reflected infrared light; (3) digitization of the images; and (4) processing the digital image data to determine the direction of gaze from the centroids of the pupil and cornea in the images. Most of the prior commercial noninvasive eyetracking systems rely on standard video cameras, which operate at frame rates of about 30 Hz. Such systems are limited to slow, full-frame operation. The video camera in the present system includes a charge-coupled-device (CCD) image detector plus electronic circuitry capable of implementing an advanced control scheme that effects readout from a small region of interest (ROI), or subwindow, of the full image. Inasmuch as the image features of interest (the cornea and pupil) typically occupy a small part of the camera frame, this ROI capability can be exploited to determine the direction of gaze at a high frame rate by reading out from the ROI that contains the cornea and pupil (but not from the rest of the image) repeatedly. One of the present algorithms exploits the ROI capability. The algorithm takes horizontal row slices and takes advantage of the symmetry of the pupil and cornea circles and of the gray-scale contrasts of the pupil and cornea with respect to other parts of the eye. The algorithm determines which horizontal image slices contain the pupil and cornea, and, on each valid slice, the end coordinates of the pupil and cornea. Information from multiple slices is then combined to robustly locate the centroids of the pupil and cornea images. The other of the two present algorithms is a modified version of an older algorithm for estimating the direction of gaze from the centroids of the pupil and cornea. The modification lies in the use of the coordinates of the centroids, rather than differences between the coordinates of the centroids, in a gaze-mapping equation. The equation locates a gaze point, defined as the intersection of the gaze axis with a surface of interest, which is typically a computer display screen (see figure). The expected advantage of the modification is to make the gaze computation less dependent on some simplifying assumptions that are sometimes not accurate

Talukder, Ashit↗

Time-Domain Terahertz Computed Axial Tomography NDE System

NASA has identified the need for advanced non-destructive evaluation (NDE) methods to characterize aging and durability in aircraft materials to improve the safety of the nation's airline fleet. 3D THz tomography can play a major role in detection and characterization of flaws and degradation in aircraft materials, including Kevlar-based composites and Kevlar and Zylon fabric covers for soft-shell fan containment where aging and durability issues are critical. A prototype computed tomography (CT) time-domain (TD) THz imaging system has been used to generate 3D images of several test objects including a TUFI tile (a thermal protection system tile used on the Space Shuttle and possibly the Orion or similar capsules). This TUFI tile had simulated impact damage that was located and the depth of damage determined. The CT motion control gan try was designed and constructed, and then integrated with a T-Ray 4000 control unit and motion controller to create a complete CT TD-THz imaging system prototype. A data collection software script was developed that takes multiple z-axis slices in sequence and saves the data for batch processing. The data collection software was integrated with the ability to batch process the slice data with the CT TD-THz image reconstruction software. The time required to take a single CT slice was decreased from six minutes to approximately one minute by replacing the 320 ps, 100-Hz waveform acquisition system with an 80 ps, 1,000-Hz waveform acquisition system. The TD-THZ computed tomography system was built from pre-existing commercial off-the-shelf subsystems. A CT motion control gantry was constructed from COTS components that can handle larger samples. The motion control gantry allows inspection of sample sizes of up to approximately one cubic foot (.0.03 cubic meters). The system reduced to practice a CT-TDTHz system incorporating a COTS 80- ps/l-kHz waveform scanner. The incorporation of this scanner in the system allows acquisition of 3D slice data with better signal-to-noise using a COTS scanner rather than the gchirped h scanner. The system also reduced to practice a prototype for commercial CT systems for insulating materials where safety concerns cannot accommodate x-ray. A software script was written to automate the COTS software to collect and process TD-THz CT data.

Zimdars, David↗

High resolution wind measurements for offshore wind energy development

A method, apparatus, system, article of manufacture, and computer readable storage medium provide the ability to measure wind. Data at a first resolution (i.e., low resolution data) is collected by a satellite scatterometer. Thin slices of the data are determined. A collocation of the data slices are determined at each grid cell center to obtain ensembles of collocated data slices. Each ensemble of collocated data slices is decomposed into a mean part and a fluctuating part. The data is reconstructed at a second resolution from the mean part and a residue of the fluctuating part. A wind measurement is determined from the data at the second resolution using a wind model function. A description of the wind measurement is output.

Nghiem, Son Van↗