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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 217 records · Page 12
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Local bilinear computation of Jacobi sets

Abstract We propose a novel method for the computation of Jacobi sets in 2D domains. The Jacobi set is a topological descriptor based on Morse theory that captures gradient alignments among multiple scalar fields, which is useful for multi-field visualization. Previous Jacobi set computations use piecewise linear approximations on triangulations that result in discretization artifacts like zig-zag patterns. In this paper, we utilize a local bilinear method to obtain a more precise approximation of Jacobi sets by preserving the topology and improving the geometry. Consequently, zig-zag patterns on edges are avoided, resulting in a smoother Jacobi set representation. Our experiments show a better convergence with increasing resolution compared to the piecewise linear method. We utilize this advantage with an efficient local subdivision scheme. Finally, our approach is evaluated qualitatively and quantitatively in comparison with previous methods for different mesh resolutions and across a number of synthetic and real-world examples.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2014

A new level set model for multimaterial flows

We present a new level set model for representing multimaterial flows in multiple space dimensions. Instead of associating a level set function with a specific fluid material, the function is associated with a pair of materials and the interface that separates them. A voting algorithm collects sign information from all level sets and determines material designations. M(M ₋1)/2 level set functions might be needed to represent a general M-material configuration; problems of practical interest use far fewer functions, since not all pairs of materials share an interface. The new model is less prone to producing indeterminate material states, i.e. regions claimed by more than one material (overlaps) or no material at all (vacuums). It outperforms existing material-based level set models without the need for reinitialization schemes, thereby avoiding additional computational costs and preventing excessive numerical diffusion.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Stepwise approach to SNP-set analysis illustrated with the Metabochip and colorectal cancer in Japanese Americans of the Multiethnic Cohort

Background: Common variants have explained less than the amount of heritability expected for complex diseases, which has led to interest in less-common variants and more powerful approaches to the analysis of whole-genome scans. Because of low frequency (low statistical power), less-common variants are best analyzed using SNP-set methods such as gene-set or pathway-based analyses. However, there is as yet no clear consensus regarding how to focus in on potential risk variants following set-based analyses. We used a stepwise, telescoping approach to analyze commonand rare-variant data from the Illumina Metabochip array to assess genomic association with colorectal cancer (CRC) in the Japanese sub-population of the Multiethnic Cohort (676 cases, 7180 controls). We started with pathway analysis of SNPs that are in genes and pathways having known mechanistic roles in colorectal cancer, then focused on genes within the pathways that evidenced association with CRC, and finally assessed individual SNPs within the genes that evidenced association. Pathway SNPs downloaded from the dbSNP database were cross-matched with Metabochip SNPs and analyzed using the logistic kernel machine regression approach (logistic SNP-set kernel-machine association test, or sequence kernel association test; SKAT) and related methods. Results: The TGF-β and WNT pathways were associated with all CRC, and the WNT pathway was associated with colon cancer. Individual genes demonstrating the strongest associations were TGFBR2 in the TGF-β pathway and SMAD7 (which is involved in both the TGF-β and WNT pathways). As partial validation of our approach, a known CRC risk variant in SMAD7 (in both the TGF-β and WNT pathways: rs11874392) was associated with CRC risk in our data. We also detected two novel candidate CRC risk variants (rs13075948 and rs17025857) in TGFBR2, a gene known to be associated with CRC risk. Conclusions: A stepwise, telescoping approach identified some potentially novel risk variants associated with colorectal cancer, so it may be a useful method for following up on results of set-based SNP analyses. Further work is required to assess the statistical characteristics of the approach, and additional applications should aid in better clarifying its utility.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2006

Multiclass Reduced-Set Support Vector Machines

There are well-established methods for reducing the number of support vectors in a trained binary support vector machine, often with minimal impact on accuracy. We show how reduced-set methods can be applied to multiclass SVMs made up of several binary SVMs, with significantly better results than reducing each binary SVM independently. Our approach is based on Burges' approach that constructs each reduced-set vector as the pre-image of a vector in kernel space, but we extend this by recomputing the SVM weights and bias optimally using the original SVM objective function. This leads to greater accuracy for a binary reduced-set SVM, and also allows vectors to be 'shared' between multiple binary SVMs for greater multiclass accuracy with fewer reduced-set vectors. We also propose computing pre-images using differential evolution, which we have found to be more robust than gradient descent alone. We show experimental results on a variety of problems and find that this new approach is consistently better than previous multiclass reduced-set methods, sometimes with a dramatic difference.

reduced set methods↗
NASA NTRSDate not supplied

Formal Verification of the Interaction Between Semi-Algebraic Sets and Real Analytic Functions

Semi-algebraic sets and real analytic functions are fundamental concepts in Real Algebraic Geometry and Real Analysis, respectively. These concepts interact in the study of Differential Equations, where the real analytic solution to a differential equation is known to enter or exit a semi-algebraic set in a predicable way. Motivated to enhance the capability to reason about differential equations in the Prototype Verification System (PVS), a formalization of multivariate polynomials, semi-algebraic sets, and real analytic functions is developed. The favorable way that a real analytic function enters and exits a semi-algebraic set is proven. It is further shown that if the function is assumed to be smooth, a slightly weaker assumption than real analytic, these favorable interactions with semi-algebraic sets may fail.

Real analytic functions↗
DOE OSTI2024

Developing Asparagaceae1726: An Asparagaceae‐specific probe set targeting 1726 loci for Hyb‐Seq and phylogenomics in the family

Abstract Premise Target sequence capture (Hyb‐Seq) is a cost‐effective sequencing strategy that employs RNA probes to enrich for specific genomic sequences. By targeting conserved low‐copy orthologs, Hyb‐Seq enables efficient phylogenomic investigations. Here, we present Asparagaceae1726—a Hyb‐Seq probe set targeting 1726 low‐copy nuclear genes for phylogenomics in the angiosperm family Asparagaceae—which will aid the often‐challenging delineation and resolution of evolutionary relationships within Asparagaceae. Methods Here we describe and validate the Asparagaceae1726 probe set (https://github.com/bentzpc/Asparagaceae1726) in six of the seven subfamilies of Asparagaceae. We perform phylogenomic analyses with these 1726 loci and evaluate how inclusion of paralogs and bycatch plastome sequences can enhance phylogenomic inference with target‐enriched data sets. Results We recovered at least 82% of target orthologs from all sampled taxa, and phylogenomic analyses resulted in strong support for all subfamilial relationships. Additionally, topology and branch support were congruent between analyses with and without inclusion of target paralogs, suggesting that paralogs had limited effect on phylogenomic inference. Discussion Asparagaceae1726 is effective across the family and enables the generation of robust data sets for phylogenomics of any Asparagaceae taxon. Asparagaceae1726 establishes a standardized set of loci for phylogenomic analysis in Asparagaceae, which we hope will be widely used for extensible and reproducible investigations of diversification in the family.

Plant Sciences↗
DOE OSTI2018

A thermomechanical anisotropic continuum model for geological materials with multiple joint sets

Joints in geological materials introduce elastic compliance and weak planes on which sliding can occur. Although these materials can have multiple joint sets, they often have preferred orientations that cause both elastic and inelastic anisotropic response even when the unjointed material is isotropic. Azimuthal variations in radial velocity and polarity of tangential motion have been observed in experimental data for wave propagation caused by an initially spherical source in a geological material with multiple joint sets. This observed tangential ground motion was found to be related to mechanical anisotropy caused by preferred orientations of joints in the rock. This paper describes thermomechanical continuum constitutive equations, which model the effects of multiple persistent joint sets. A number of quasi–static examples are considered, which show that the proposed model predicts anisotropic effects of sliding on multiple joint sets similar to those exhibited by computationally expensive mesoscale calculations, which model joint sets explicitly.

58 GEOSCIENCES↗
DOE OSTI2021

A new primer set for Clade I nosZ that recovers genes from a broader range of taxa

Denitrification is an important global N cycle process. The gene encoding NosZ that converts nitrous oxide (N 2 O) to N 2 has been widely used as a biomarker to study denitrifying communities. However, conventional PCR primers target a limited range of the genetically diverse Clade I nosZ, and the amplicons are too long for sequencing on current NGS platforms. To address these issues, here we developed a new PCR primer set that amplifies a 355-bp region of Clade I nosZ and captures broader taxonomic coverage than conventional primers in in silico tests. When compared with the widely used nosZF_nosZR_Rich_2003 set using the same soil samples and the same sequencing depth, the new set retrieved genes from four times more unique species, with consistently higher general diversity-based metrics. The new primer set performed well with different sequencing platforms (Ion Torrent and Illumina), and among a wide variety of soils from polar to tropical, desert to agricultural, and surface to a very low biomass subsoil, with significant differences in denitrifying community diversity and composition. This new primer set for Clade I together with the primers recently reported for Clade II by Chee-Sanford et al. provides a more comprehensive assessment of denitrifier gene hosts, their ecological patterns, and the degree of novelty in retrieved gene sequences.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

On OM-decomposable sets

We introduce and study the family of sets in a finite-dimensional Euclidean space which can be written as the Minkowski sum of an open, bounded, and convex set and a closed convex cone. We establish several properties of the class of such sets, called OM-decomposable, some of which extend related properties holding for the class of Motzkin decomposable sets (i.e., those for which the convex and bounded set in the decomposition is requested to be closed, hence compact).

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2015

Dosimetric Accuracy of a Dual Photon Energy Linac at Low Monitor Setting for Various Pulse Repetition Frequencies

Accuracy of dose delivery at low monitor unit setting is studied for a dual photon energy linear accelerator. Dose delivered per MU is found to be constant for both the photon beams for MU settings above 30. For lower MUs there is definite deviation from the calibrated value and the error is found to be increasing as fewer MUs are set for dose delivery. This dose/MU ratio at low MU setting is found to be dose-rate dependent, showing an increasing trend with pulse repetition frequency (PRF). Also, the dosimetric ratio is observed to be mode dependent; its value for an 18 MV beam is almost double that observed in the case of a 6 MV beam at very low MU setting. The magnitude of this error should be determined for each energy so that appropriate corrections can be applied if very low MUs are to be used.

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2015

Porous structure and mechanical strength of cement-lime pastes during setting

The acceleration of a cement paste setting as a result of lime addition may be shown from isothermal calorimetry measurements. We investigated the underlying mechanisms through two techniques that provide information on porous structure (using Nuclear Magnetic Resonance) and mechanical properties (elastic modulus measured by rheometry). The correlation of the two sets of results on a cement paste clearly reveals the successive steps of setting, and particularly highlights the so-called induction period. We show that this induction period disappears in the presence of lime, leading to an acceleration of the setting. We also show that beyond some critical concentration of added lime the acceleration of setting is negligible.

36 MATERIALS SCIENCE↗
DOE OSTI2013

A discontinuous Galerkin conservative level set scheme for interface capturing in multiphase flows

The accurate conservative level set (ACLS) method of Desjardins et al. [O. Desjardins, V. Moureau, H. Pitsch, An accurate conservative level set/ghost fluid method for simulating turbulent atomization, J. Comput. Phys. 227 (18) (2008) 8395–8416] is extended by using a discontinuous Galerkin (DG) discretization. DG allows for the scheme to have an arbitrarily high order of accuracy with the smallest possible computational stencil resulting in an accurate method with good parallel scaling. This work includes a DG implementation of the level set transport equation, which moves the level set with the flow field velocity, and a DG implementation of the reinitialization equation, which is used to maintain the shape of the level set profile to promote good mass conservation. A near second order converging interface curvature is obtained by following a height function methodology (common amongst volume of fluid schemes) in the context of the conservative level set. Various numerical experiments are conducted to test the properties of the method and show excellent results, even on coarse meshes. The tests include Zalesak’s disk, two-dimensional deformation of a circle, time evolution of a standing wave, and a study of the Kelvin–Helmholtz instability. Finally, this novel methodology is employed to simulate the break-up of a turbulent liquid jet.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2012

Life cycle assessment of TV sets in China: A case study of the impacts of CRT monitors

Along with the rapid increase in both production and use of TV sets in China, there is an increasing awareness of the environmental impacts related to the accelerating mass production, electricity use, and waste management of these sets. This paper aims to describe the application of life cycle assessment (LCA) to investigate the environmental performance of Chinese TV sets. An assessment of the TV set device (focusing on the Cathode Ray Tube (CRT) monitor) was carried out using a detailed modular LCA based on the international standards of the ISO 14040 series. The LCA was constructed using SimaPro software version 7.2 and expressed with the Eco-indicator' 99 life cycle impact assessment method. For a sensitivity analysis of the overall LCA results, the CML method was used in order to estimate the influence of the choice of the assessment method on the results. Life cycle inventory information was compiled by Ecoinvent 2.2 databases, combined with literature and field investigations on the current Chinese situation. The established LCA study shows that the use stage of such devices has the highest environmental impact, followed by the manufacturing stage. In the manufacturing stage, the CRT and the Printed Circuit Board (PCB) are those components contributing the most environmental impacts. During the use phase, the environmental impacts are due entirely to the methods of electricity generation used to run them, since no other aspects were taken into account for this phase. The final processing step-the end-of-life stage-can lead to a clear environmental benefit when the TV sets are processed through the formal dismantling enterprises in China.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2021

Norm-Conserving Pseudopotentials and Basis Sets to Explore Actinide Chemistry in Complex Environments

We constructed and tested a new set of norm-conserving pseudopotentials, as well as companion Gaussian basis sets, for the actinide series (Ac–Lr) using the Goedecker, Teter and Hutter (GTH) formalism within the generalized gradient approximation (GGA) functional for exchange-correlation of Perdew, Burke and Ernzerhof (PBE). This fills a critical void in the literature for studying the chemistry of 5f–block elements in condensed phase. The accuracy and reliability of the newly parameterized An–GTH pseudopotentials and basis sets, a variety of tests on actinide-containing molecules were carried out and compared to all-electron and available experimental results. The new pseudopotentials include both medium ( [Xe]4f 14 ) and large core ( [Xe]4f 14 5d 10 ) options that successfully reproduced structure and energetics, particularly redox processes. The medium core size set, in particular, reproduced all electron calculations over multiple oxidation states from 0 to VII, whereas the large core set was suitable only for the early series elements and low oxidation states.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Optimal invariant sets for atomistic machine learning

The representation of atomic configurations for machine learning models has led to numerous sets of descriptors. However, many descriptor sets are incomplete and/or functionally dependent. Incomplete sets cannot faithfully represent atomic environments. Yet complete constructions often suffer from a high degree of functional dependence, where some descriptors are functions of others. These redundant descriptors do not improve discrimination between atomic environments. We employ pattern recognition techniques to remove dependent descriptors to produce the smallest possible set that satisfies completeness. We apply this in two ways: First, we refine an existing description, the atomic cluster expansion. Second, we augment an incomplete construction, yielding a new message-passing neural network architecture that can recognize up to 5-body patterns. This architecture shows strong accuracy on state-of-the-art benchmarks while retaining low computational cost. Our results demonstrate the utility of this strategy to optimize descriptor sets across a range of descriptors and application datasets.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

Rapid acquisition of data dense solid-state CPMG NMR spectral sets using multi-dimensional statistical analysis

The development of multi-dimensional statistical methods has been demonstrated on variable contact time (VCT) 29 Si{ 1 H} cross-polarization magic angle spinning (CP/MAS) data sets collected using Carr–Purcell–Meiboom–Gill (CPMG) type acquisition. These methods utilize the transformation of the collected 2D VCT data set into a 3D data set and use tensor-rank decomposition to extract the spectral components that vary as a function of transverse relaxation time ( T 2 ) and CP contact time. The result is a data dense spectral set that can be used to reconstruct CP/MAS spectra at any contact time with a high signal to noise ratio and with an excellent agreement to 29 Si{ 1 H} CP/MAS spectra collected using conventional acquisition. These CPMG data can be collected in a fraction of time that would be required to collect a conventional VCT data set. Here, we demonstrate the method on samples of functionalized mesoporous silica materials and show that the method can provide valuable surface specific information about their functional chemistry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Differences in Outcomes between Patellar Dislocations Managed in Emergent versus Non-Emergent Care Settings

Abstract Patellar dislocations occur at a much higher rate in military than civilian populations. Past population-level studies have shown that surgical management is as good as or superior to conservative care and may reduce future reoccurrences. Although in acute cases and in civilian clinics, patellar dislocations are usually managed first in an emergent care setting, previous work suggests this can lead to increased costs. This study compared differences in downstream care type and intensity of services based on whether initial care occurred in emergent or non-emergent care settings. In our sample of 1,523 Military Health System (MHS) beneficiaries with patellar dislocation and 2-year follow-up, we found non-significant differences in costs, intensity of services, and rates of surgical repair regardless of whether the patient was initially seen in an emergent versus non-emergent care setting. Although we found significant increases in the use of imaging, patellar dislocation-related medical visits, and frequency of closed treatment approaches in emergent care settings, these values were very small and likely not clinically significant. These findings, which included all the patellar dislocations reported across the entire MHS in a 24-month period, suggest that neither emergent nor non-emergent care settings are likely to influence the long-term care received by the individual.

Orthopedics↗
DOE OSTI2013

Setting temperature effect in polycrystalline exchange-biased IrMn/CoFe bilayers

We study the effect of atomic interdiffusion on the exchange bias of polycrystalline IrMn/({sup 57}Fe + CoFe) multilayers due to the thermal setting process of exchange coupling during field annealing. Depth-resolved {sup 57}Fe conversion electron Moessbauer spectroscopy was used to quantify atomic interdiffusion. Vibrating sample magnetometry was used to monitor the variation of exchange bias and magnetisation. It was found that interface sharpness is only affected above {approx}350 Degree-Sign C. Three different stages for the setting of exchange bias can be inferred from our results. At the lower setting temperatures (up to 350 Degree-Sign C), the effect of field annealing involves alignment of spins and interfacial coupling due to the setting of both antiferromagnetic (AF) bulk and interface without significant interdiffusion. At a second stage (350-450 Degree-Sign C), where AF ordering dominates over diffusion effects, atomic migration and increased setting of AF spins co-exist to produce a peak in exchange bias field and coercivity. On a third stage (>450 Degree-Sign C), severe chemical intermixing reduces significantly the F/AF coupling.

36 MATERIALS SCIENCE↗