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At least 217 records · Page 12

Protein structure, electron transfer and evolution of prokaryotic photosynthetic reaction centers

Photosynthetic reaction centers from a variety of organisms have been isolated and characterized. The groups of prokaryotic photosynthetic organisms include the purple bacteria, the filamentous green bacteria, the green sulfur bacteria and the heliobacteria as anoxygenic representatives as well as the cyanobacteria and prochlorophytes as oxygenic representatives. This review focuses on structural and functional comparisons of the various groups of photosynthetic reaction centers and considers possible evolutionary scenarios to explain the diversity of existing photosynthetic organisms.

NASA Discipline Exobiology↗

Ice Chemistry Through Quiescent Dust In IC5146

IC 5146 is a nearby (200pc) dark cloud complex in Cygnus. The lack of star formation activity makes it an excellent laboratory for the study of the chemical complexity in the earliest stages of dense molecular cloud evolution. We have used the Spitzer Infrared Spectrometer (IRS) to probe dust along 10 sight-lines toward K-Giant background stars, sampling a range of visual extinction from 2-20mag. Here we present 5-20micron spectra and correlation studies of the 6.0micron water-ice band and 9.7micron silicate absorption band with Av for a sample of our Spitzer program sources. Our IC5146 Spitzer data indicate grain growth and ice formation occurs early in the history of dense cloud formation. Each sight-line observed reveals the 9.7micron amorphous silicate absorption band. The highest Av sightlines show clear detections of ices at 6.0micron (water-ice mixture), 6.85micron (processed ice) and 15.2micron (CO2). However, sight-lines in the low-to-mid Av range provide intriguing variations. We may have the first example of two objects, one with ice features and one without, seen through the same cloud sightline with similar Av approx. 6 and similar silicate band optical depths. Also, the nominally expected linear correlation of Av with silicate band depth does not appear to hold for this cloud (turnover at Av approx.10-12). Both trends imply complexities in the grain growth at one of the earliest stages of dust and ice interaction ever observed. The highest extinction source in our sample, Av=20, reveals the 6.0micron (water), 6.85micron (processed ice), 9.7micron silicate and 15.2micron CO2 ice bands. Until recently, the 6.85micron band had only been detected towards embedded protostellar objects. Two additional quiescent dust sightlines from the C2D results now also indicate the 6.85micron band (Taurus and Serpens) by Knez et al. 2005, demonstrating the role of energetic processing within pristine ices prior to the onset of star formation.

Ennico, Kimberly↗

Radiolytic Cryovolcanism Revisited

Location of Enceladus within the inner magnetosphere of Saturn makes it likely that energetic electron irradiation, ion-neutral chemistry of the emergent cryovolcanic plume gas, and resultant radiolytic modification of surface ice composition could impact long-term evolution of molecular composition in the global ice crust. Thermally-driven convection of ice in the south polar terrain would bring radiolytic oxidant products into contact with subsurface reservoirs of primordial organics on million-year time scales. The chemical reactions leading to CO2 gas production as a primary gas-piston driver of cryovolcanic activity would be exponentially elevated in the warm-ice margins of a heated fluid. The fluid temperature is typically assumed to be below 273 K but could be much higher in a gas-pressurized deep subsurface environment. The Perrier Ocean model has demonstrated how a CO2-loaded fluid could account for the observed jets, while the heat content of the fluid arising from the moon's deeper interior could support high levels of chemical reactivity in the thermal margins. Since mass loss and tidal dissipation arguments do not support continuous activity over billions of years, the activity is likely very episodic so that even low-level energy sources including irradiation-driven radiolysis of surface ices could substantially contribute to the chemical dynamics of the activity apparently now in high phase. A multi-phase thermochemical model, and supporting laboratory measurements of temperature-dependent reaction rates, are needed to investigate these potentially complex processes.

Cooper, John F.↗

Giant-scale supernova remnants - The role of differential galactic rotation and the formation of molecular clouds

The evolution of remnants produced by the total supernova power from an evolved OB association in a differentially rotating galactic disk is presented. The calculations at 5 kpc and 10 kpc from the galactic center lead to column densities across the remnant shell, or across sections of the remnants, which eventually exceed the opacity criterion of Franco and Cox (1986) and thus form molecular clouds. The resultant clouds have masses larger than 100,000 solar masses, dimensions of several hundred parsecs, and a separation larger than 1 kpc. In contrast, at 20 kpc from the galactic center the opacity criterion is never fulfilled.

Tenorio-Tagle, G.↗

Oxygen evolution on a SrFeO3 anode - Mechanistic considerations from molecular orbital theory

Various pathways proposed in the literature for the evolution of O2 in electrochemical oxidations are explored using the atom superposition and electron delocalization molecular orbital (ASED-MO) theory and the cluster models of the SrFeO3 surface as a prototype material. Calculations indicate that oxygen atoms can be easily formed on the (100) surface as well as on the edge cation sites of a SrFeO3 anode by the discharge of OH(-), followed by its deprotonation and electron transfer to the electrode. The O atoms can form O2 on the edge and corner sites, where the Fe(4+) is coordinated to four and three bulk oxygen anions, respectively. The calculations strongly disfavor mechanisms involving coupling of oxygen atoms adsorbed on different cations as well as a mechanism featuring an ozone intermediate.

Mehandru, S. P.↗

Chemical evolution of dense clouds

Attention is given to chemical processes which could determine the molecular composition of the cloud during the several stages of its evolution, taking into account thermal reactions at the relatively high interstellar densities expected during the processes. The origin of the observed molecules is discussed together with questions of molecular evolution during collapse of the cloud and the role of organic molecules in planetary chemical evolution. A number of experiments are also considered along with the application of the experimental results to cloud equilibrium problems.

Chapelle, E. W.↗

The role of the molecular-metallic transition of hydrogen in the evolution of Jupiter, Saturn, and brown dwarfs

An equation of state for hydrogen which predicts a molecular-metallic phase transition at finite temperatures has become available recently. The effect of this phase transition on the cooling histories of these two giant planets and of substellar brown dwarfs is studied. The phase transition alters the present age of Jupiter and of Saturn by a few percent. Interestingly, the cooling of brown dwarfs is most strongly affected at the time when the interior adiabat crosses the critical point of the phase transition.

Saumon, Didier↗

Dissociative recombination in interstellar clouds

Molecular ions play a significant role in the chemistry and evolution of interstellar molecular clouds, even though these regions are overwhelmingly neutral. The dissociative recombination (DR) process governs the abundances of many of these ions and of related neutral species. The gas-phase ion-molecule chemistry of the simplest species is summarized, with emphasis on those problems which are most sensitive to uncertain rates or product branching ratios of DR processes. Examples of the kinds of information needed about DR processes are presented. The importance of the H3(+) ion and prospects for its direct observation are discussed.

Black, John H.↗

Interstellar processes; Proceedings of the Symposium, Grand Teton National Park, WY, July 1-7, 1986

The conference presents papers on the Milky Way as a galaxy; observations of components of the interstellar medium; interstellar magnetic properties; interstellar processes on a galactic scale; dynamical processes in interstellar clouds; interstellar dust grains; interstellar chemical processes; and heating, cooling, and radiative processes. Attention is given to H2 in the Galaxy, hot interstellar gas in the Galactic disk and halo, interstellar magnetic fields, cloud formation and destruction, theoretical approaches to interstellar turbulence, and infrared absorption and emission characteristics of interstellar PAHs. Other topics include gas phase chemical processes in molecular clouds, the chemical evolution of galaxies, and the atomic and molecular physics of interstellar heating and cooling.

Hollenbach, David J.↗

Contributions of experimental protobiogenesis to the theory of evolution

Inferences from experiments in protobiogenesis are examined as a forward extension of the theory of evolutionary biology. A nondiscontinuous, intraconsistent theory of general evolution embracing both protobiology and biology is outlined. This overview emphasizes Darwinian selection in the later stages of evolution, and stereochemical molecular selection in some of its earlier stages. It incorporates the concept of limitation of the scope of evolution by internal constraints on variation, based on the argument that internally limiting constraints observed in experiments with molecules are operative in organisms, if chemical processes occur within biological processes and biological processes are assumed to be exponentializations of chemical processes. Major evolutionary events might have occurred by rapid self-assembly processes analogous to those observed in the formation of phase-separated microspheres from amorphous powder or supersaturated solutions.

Fox, S. W.↗

Boundary Conditions for the Paleoenvironment: Chemical and Physical Processes in the Pre-Solar Nebula

The basic theme of this program is the study of molecular complexity and evolution in interstellar clouds and in primitive solar system objects. Research has included the detection and study of a number of new interstellar molecules and investigation of reaction pathways for astrochemistry from a comparison of theory and observed molecular abundances. The latter includes studies of cold, dark clouds in which ion-molecule chemistry should predominate, searches for the effects of interchange of material between the gas and solid phases in interstellar clouds, unbiased spectral surveys of particular sources, and systematic investigation of the interlinked chemistry and physics of dense interstellar clouds. In addition, the study of comets has allowed a comparison between the chemistry of such minimally thermally processed objects and that of interstellar clouds, shedding light on the evolution of the biogenic elements during the process of solar system formation.

Irvine, William M.↗

Boundary Conditions for the Paleoenvironment: Chemical and Physical Processes in Dense Interstellar Clouds: Summary of Research

The basic theme of this program was the study of molecular complexity and evolution for the biogenic elements and compounds in interstellar clouds and in primitive solar system objects. Research included the detection and study of new interstellar and cometary molecules and investigation of reaction pathways for astrochemistry from a comparison of theory and observed molecular abundances. The latter includes studies of cold, dark clouds in which ion-molecule chemistry should predominate, searches for the effects of interchange of material between the gas and solid phases in interstellar clouds, unbiased spectral surveys of particular sources, and systematic investigation of the interlinked chemistry and physics of dense interstellar clouds. In addition, the study of comets has allowed a comparison between the chemistry of such minimally thermally processed objects and that of interstellar clouds, shedding light on the evolution of the biogenic elements during the process of solar system formation. One PhD dissertation on this research was completed by a graduate student at the University of Massachusetts. An additional 4 graduate students at the University of Massachusetts and 5 graduate students from other institutions participated in research supported by this grant, with 6 of these thus far receiving PhD degrees from the University of Massachusetts or their home institutions. Four postdoctoral research associates at the University of Massachusetts also participated in research supported by this grant, receiving valuable training.

Irvine, William M.↗

Developmental genes and the origin and evolution of Metazoa

The author discusses the role of developmental genes in evolution of life and the use of molecular approaches to confirm morphologic homology, to aid in understanding developmental mechanisms of evolution of novel structures, and to investigate some aspects of the evolution of life. Topics examined include developmental genes and homology; the role of co-optation and divergence, homeosis, and heterochrony as mechanisms of evolution; and life history evolution and model organisms.

NASA Discipline Exobiology↗

The chemistry of dense interstellar clouds

The basic theme of this program is the study of molecular complexity and evolution in interstellar and circumstellar clouds incorporating the biogenic elements. Recent results include the identification of a new astronomical carbon-chain molecule, C4Si. This species was detected in the envelope expelled from the evolved star IRC+10216 in observations at the Nobeyama Radio Observatory in Japan. C4Si is the carrier of six unidentified lines which had previously been observed. This detection reveals the existence of a new series of carbon-chain molecules, C sub n Si (n equals 1, 2, 4). Such molecules may well be formed from the reaction of Si(+) with acetylene and acetylene derivatives. Other recent research has concentrated on the chemical composition of the cold, dark interstellar clouds, the nearest dense molecular clouds to the solar system. Such regions have very low kinetic temperatures, on the order of 10 K, and are known to be formation sites for solar-type stars. We have recently identified for the first time in such regions the species of H2S, NO, HCOOH (formic acid). The H2S abundance appears to exceed that predicted by gas-phase models of ion-molecule chemistry, perhaps suggesting the importance of synthesis on grain surfaces. Additional observations in dark clouds have studied the ratio of ortho- to para-thioformaldehyde. Since this ratio is expected to be unaffected by both radiative and ordinary collisional processes in the cloud, it may well reflect the formation conditions for this molecule. The ratio is observed to depart from that expected under conditions of chemical equilibrium at formation, perhaps reflecting efficient interchange between cold dust grains in the gas phase.

Irvine, W. M.↗

A scaling law of radial gas distribution in disk galaxies

Based on the idea that local conditions within a galactic disk largely determine the region's evolution time scale, researchers built a theoretical model to take into account molecular cloud and star formations in the disk evolution process. Despite some variations that may be caused by spiral arms and central bulge masses, they found that many late-type galaxies show consistency with the model in their radial atomic and molecular gas profiles. In particular, researchers propose that a scaling law be used to generalize the gas distribution characteristics. This scaling law may be useful in helping to understand the observed gas contents in many galaxies. Their model assumes an exponential mass distribution with disk radius. Most of the mass are in atomic gas state at the beginning of the evolution. Molecular clouds form through a modified Schmidt Law which takes into account gravitational instabilities in a possible three-phase structure of diffuse interstellar medium (McKee and Ostriker, 1977; Balbus and Cowie, 1985); whereas star formation proceeds presumably unaffected by the environmental conditions outside of molecular clouds (Young, 1987). In such a model both atomic and molecular gas profiles in a typical galactic disk (as a result of the evolution) can be fitted simultaneously by adjusting the efficiency constants. Galaxies of different sizes and masses, on the other hand, can be compared with the model by simply scaling their characteristic length scales and shifting their radial ranges to match the assumed disk total mass profile sigma tot(r).

Wang, Zhong↗

Fragmentation, protostellar winds, and star formation

Aspects of the current theory of molecular-cloud (MC) evolution and star formation are reviewed, with consideration of recent star and MC observations. The problem of MC collapse is discussed in terms of fragmentation in spherically symmetric collapse, the role of magnetic fields and density fluctuations, anisotropic collapse, and nonlinear interactions between fragments. Protostellar winds are identified as the source of the energy supporting MC against collapse, sweeping shells of mass into MC to produce low-mass stars continuously, and sustaining the production of massive stars once it is triggered by the collision of MCs, as in the spiral density-wave peaks. The clumping and coagulation processes are considered for the case of the MC in Orion. The protostellar-wind mass input required to inhibit systematic MC-core collapse is estimated at 10 to the -6th solar mass/cu pc year.

Silk, J.↗