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At least 217 records · Page 12

Reinforcement learning based hybrid bond-order coarse-grained interatomic potentials for exploring mesoscale aggregation in liquid–liquid mixtures

Exploring mesoscopic physical phenomena has always been a challenge for brute-force all-atom molecular dynamics simulations. Although recent advances in computing hardware have improved the accessible length scales, reaching mesoscopic timescales is still a significant bottleneck. Coarse-graining of all-atom models allows robust investigation of mesoscale physics with a reduced spatial and temporal resolution but preserves desired structural features of molecules, unlike continuum-based methods. Here, we present a hybrid bond-order coarse-grained forcefield (HyCG) for modeling mesoscale aggregation phenomena in liquid–liquid mixtures. The intuitive hybrid functional form of the potential offers interpretability to our model, unlike many machine learning based interatomic potentials. We parameterize the potential with the continuous action Monte Carlo Tree Search (cMCTS) algorithm, a reinforcement learning (RL) based global optimizing scheme, using training data from all-atom simulations. The resulting RL-HyCG correctly describes mesoscale critical fluctuations in binary liquid–liquid extraction systems. cMCTS, the RL algorithm, accurately captures the mean behavior of various geometrical properties of the molecule of interest, which were excluded from the training set. The developed potential model along with the RL-based training workflow could be applied to explore a variety of other mesoscale physical phenomena that are typically inaccessible to all-atom molecular dynamics simulations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Toward digital design at the exascale: An overview of project ICECap

High performance computing has entered the Exascale Age. Capable of performing over 1018 floating point operations per second, exascale computers, such as El Capitan, the National Nuclear Security Administration's first, have the potential to revolutionize the detailed in-depth study of highly complex science and engineering systems. However, in addition to these kind of whole machine “hero” simulations, exascale systems could also enable new paradigms in digital design by making petascale hero runs routine. Currently, untenable problems in complex system design, optimization, model exploration, and scientific discovery could all become possible. Motivated by the challenge of uncovering the next generation of robust high-yield inertial confinement fusion (ICF) designs, project ICECap (Inertial Confinement on El Capitan) attempts to integrate multiple advances in machine learning (ML), scientific workflows, high performance computing, GPU-acceleration, and numerical optimization to prototype such a future. Built on a general framework, ICECap is exploring how these technologies could broadly accelerate scientific discovery on El Capitan. In addition to our requirements, system-level design, and challenges, we describe some of the key technologies in ICECap, including ML replacements for multiphysics packages, tools for human-machine teaming, and algorithms for multifidelity design optimization under uncertainty. As a test of our prototype pre-El Capitan system, we advance the state-of-the art for ICF hohlraum design by demonstrating the optimization of a 17-parameter National Ignition Facility experiment and show that our ML-assisted workflow makes design choices that are consistent with physics intuition, but in an automated, efficient, and mathematically rigorous fashion.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Precise mapping of new group I introns in tRNA genes

Bacterial tRNA have been found interrupted at various positions in the anticodon loop by group I introns, in four types. The primary bioinformatic tool for group I intron discovery is a covariance model that can identify conserved features in the catalytic core and can sometimes identify the typical uridine residue at the -1 position, preceding the 5-prime splice site, but cannot identify the typical guanidine residue at the omega position, preceding the 3-prime splice site, to achieve precise mapping. One approach to complete the automation of group I intron mapping is to focus instead on the exons, which is enabled by the regularity of tRNAs. We develop a software module, within a larger package (tFind) aimed at mapping bacterial tRNA and tmRNA genes precisely, that expands this list of four known classes of intron-interrupted tRNAs to 21 cases. A new covariance model for these introns is presented. The wobble base pair formed by the -1 uridine is considered a determinant of the 5-prime splice site, yet one reasonably large new type bears a cytidine nucleotide at that position.

Williams, Kelly P.↗

Nuclear Structure Studies at the Limits of Stability

On the quest for a predictive model of atomic nuclei, the properties of rare isotopes have emerged as critical observables that benchmark extrapolations, identify missing physics ingredients in models, or that enable discovery science. Formerly NSCL and now FRIB facilitate world-leading experiments due to the availability of fast, stopped, and reaccelerated rare-isotope beams in conjunction with unique instruments. DOE-SC NP Award DE-SC0020451 supported from 2019 to 2023 MSU’s nuclear structure and reactions program that tackles compelling questions in the field with complementary techniques, probing single-particle and collective degrees of freedom in relevant regions of the nuclear chart and enabled developments that positioned the PIs and their research groups for first FRIB science.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Neutrino-Nucleus Interactions in the Precision Era

Current and future accelerator-based neutrino facilities, leveraging intense neutrino beams and advanced detectors, aim to precisely determine neutrino properties and probe signals of weakly interacting beyond the Standard Model physics. Achieving discovery-level precision and fully exploring the physics potential of these experiments critically depends on the accuracy of our understanding of fundamental underlying neutrino-nucleus interaction processes. This talk will focus on neutrino interactions spanning energies from tens of MeV to a few GeV—a complex, multi-scale and multi-process domain spanning from low-energy nuclear physics to perturbative QCD, with no unified underlying framework currently known. In this seminar, I will provide an overview of the field, discuss recent advancements, and share examples of ongoing cross-community efforts addressing these challenges.

Pandey, Vishvas [Fermilab]↗

Neutrino-Nucleus Interactions in the Precision Era

Current and future accelerator-based neutrino facilities, leveraging intense neutrino beams and advanced detectors, aim to precisely determine neutrino properties and probe signals of weakly interacting beyond the Standard Model physics. Achieving discovery-level precision and fully exploring the physics potential of these experiments critically depends on the accuracy of our understanding of fundamental underlying neutrino-nucleus interaction processes. This talk will focus on neutrino interactions spanning energies from tens of MeV to a few GeV a complex, multi-scale and multi-process domain spanning from low-energy nuclear physics to perturbative QCD, with no unified underlying framework currently known. In this talk, I will provide an overview of the field, discuss recent advancements, and share examples of ongoing cross-community efforts addressing these challenges.

Pandey, Vishvas [Fermilab] (ORCID:0000000230827987↗

Geochemical Mapping of 4 Vesta Begins

By December, the NASA Dawn spacecraft will have descended to a low altitude mapping orbit (LAMO), where the Gamma Ray and Neutron Detector (GRaND) will acquire global mapping data for up to four months. Measurements by GRaND will help answer elusive questions about how Vesta differentiated and the nature of processes that shaped Vesta s surface. The data will be analyzed to determine the abundances of Mg, Si, Fe, K, Th, and H at a spatial resolution of roughly 300 km full-width-at-half-maximum from a 465 km radius orbit. Thermal and fast neutron counting data will be analyzed to determine the neutron macroscopic absorption cross section and average atomic mass, providing constraints on additional elements, such as Ca and Al. GRaND will quantify the elemental composition of coarse spatial units identified by Dawn s Framing Camera (FC) and the Visible & Infrared Spectrometer (VIR). In addition, GRaND will map the mixing ratio of compositional end members selected from the howardite, eucrite and diogenite (HED) meteorites, determine the relative proportions of plagioclase and mafic minerals, and search for compositions that are absent or under-represented in the meteorite collection. While it is generally thought that Vesta s crust on a regional scale should be well-represented by linear mixing of HED whole-rock compositions, there are hints that Vesta may be more diverse than implied by this model. For example, the discovery of K-rich impact glasses in howardites suggests that K-rich rocks may be present on a portion of Vesta s surface, and the analysis of diogenites indicates considerable variability in the magmatic processes that formed them. The chemical composition of materials within Vesta s south polar structure may provide further clues to how it formed. An impact might have exposed mantle and lower crustal materials, which should have a distinctive compositional signature. We present the analysis of data acquired by GRaND from cruise through the descent to LAMO, including GRaND s sensitivity to different elements and geochemical processes.

Prettyman, Thomas H.↗

On the Importance of Neutral Composition and Temperature Measurements in the 100–200 km Altitude Region

Currently, thermospheric species densities and temperatures between ∼100 and 200 km are not known to the accuracy needed to fully characterize how the thermosphere transitions from a well-mixed atmosphere to a diffusively separated atmosphere with zero temperature gradient. This greatly inhibits scientific discovery attainable from either models or observations in this region, especially the understanding of mechanisms that drive thermosphere and ionospheric variability from space weather to climatological time scales. The purpose of this paper is to highlight the importance and critical need for new, global, height-resolved neutral composition (O, O2, N2) and temperature measurements in the new ignorosphere: the 100–200 km region of the thermosphere. We conclude with observation recommendations and requirements for new comprehensive composition and temperature measurements in the 100–200 km altitude region that would lead to significant advances in thermosphere-ionosphere science, space weather, and space climate.

thermosphere↗

Review of opportunities for new long-lived particle triggers in Run 3 of the Large Hadron Collider

Long-lived particles (LLPs) are highly motivated signals of physics Beyond the Standard Model (BSM) with great discovery potential and unique experimental challenges. The LLP search programme made great advances during Run 2 of the Large Hadron Collider (LHC), but many important regions of signal space remain unexplored. Dedicated triggers are crucial to improve the potential of LLP searches, and their development and expansion is necessary for the full exploitation of the new data. The public discussion of triggers has therefore been a relevant theme in the recent LLP literature, in the meetings of the LLP@LHC Community workshop and in the respective experiments. This paper documents the ideas collected during talks and discussions at these Workshops, benefiting as well from the ideas under development by the trigger community within the experimental collaborations. We summarise the theoretical motivations of various LLP scenarios leading to highly elusive signals, reviewing concrete ideas for triggers that could greatly extend the reach of the LHC experiments. We thus expect this document to encourage further thinking for both the phenomenological and experimental communities, as a stepping stone to further develop the LLP@LHC physics programme.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Machine Learning and Cosmology

Methods based on machine learning have recently made substantial inroads in many corners of cosmology. Through this process, new computational tools, new perspectives on data collection, model development, analysis, and discovery, as well as new communities and educational pathways have emerged. Despite rapid progress, substantial potential at the intersection of cosmology and machine learning remains untapped. In this white paper, we summarize current and ongoing developments relating to the application of machine learning within cosmology and provide a set of recommendations aimed at maximizing the scientific impact of these burgeoning tools over the coming decade through both technical development as well as the fostering of emerging communities.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Spectroscopy-guided discovery of three-dimensional structures of disordered materials with diffusion models

Spectroscopy techniques such as x-ray absorption near edge structure (XANES) provide valuable insights into the atomic structures of materials, yet the inverse prediction of precise structures from spectroscopic data remains a formidable challenge. In this study, we introduce a framework that combines generative artificial intelligence models with XANES spectroscopy to predict three-dimensional atomic structures of disordered systems, using amorphous carbon (a-C) as a model system. In this work, we introduce a new framework based on the diffusion model, a recent generative machine learning method, to predict 3D structures of disordered materials from a target property. For demonstration, we apply the model to identify the atomic structures of a-C as a representative material system from the target XANES spectra. We show that conditional generation guided by XANES spectra reproduces key features of the target structures. Furthermore, we show that our model can steer the generative process to tailor atomic arrangements for a specific XANES spectrum. Finally, our generative model exhibits a remarkable scale-agnostic property, thereby enabling generation of realistic, large-scale structures through learning from a small-scale dataset (i.e. with small unit cells). Our work represents a significant stride in bridging the gap between materials characterization and atomic structure determination; in addition, it can be leveraged for materials discovery in exploring various material properties as targeted.

36 MATERIALS SCIENCE↗

Machine learning-driven descriptions of protein dynamics at solid-liquid interfaces

This chapter has described how ML has enabled quantitative analysis of HS-AFM data to discover the physical phenomena governing protein dynamics and ordering at solid-liquid interfaces. The research detailed in this chapter modeled the rotation models of protein nanorods, the discovery of which would otherwise not be possible. By tracking the trajectories of individual protein rods from frame to frame, it was possible to model Brownian type motion and behaviors and Levy-flight dynamics that had not previously been shown. We also described the application of the Python package AtomAI, which has been developed specifically to analyze and extract physical phenomena, providing exemplar code for training an ensemble of deep neural networks to produce the semantic segmentation of AFM data and functions for encoding and decoding local environments. We last described a combinatorial approach to analyze very noisy data with a densely covered substrate where the emergence of order for the protein liquid crystals could be elucidated. By combining the methods from Case 1 and 2, it was possible to obtain the center of mass and angle for each rod in the images and track the assembly of the rods over time into a 2D liquid crystal array on the surface of mica.

protein dynamics, solid-liquid interfaces, atomic ↗

Empirical and Face Validity of Software Maintenance Defect Models Used at the Jet Propulsion Laboratory

At the Mission Design and Navigation Software Group at the Jet Propulsion Laboratory we make use of finite exponential based defect models to aid in maintenance planning and management for our widely used critical systems. However a number of pragmatic issues arise when applying defect models for a post-release system in continuous use. These include: how to utilize information from problem reports rather than testing to drive defect discovery and removal effort, practical model calibration, and alignment of model assumptions with our environment.

software reliability↗