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At least 217 records · Page 12
All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Metadata Entry Optimization For NASA's Biological Institutional Scientific Collection (NBISC)

The NASA Biological Institutional Sample Collection (NBISC) at NASA’s Ames Research Center is a critical resource housing non-human samples collected from spaceflight missions and ground analog studies, primarily consisting of specimens from rats, mice, and select microbes. The primary objective of NBISC is to systematically receive, document, preserve, and facilitate access to these samples for the global scientific community. NBISC promotes international collaboration and maximizes the return on investment for precious tissues from spaceflight and analog experiments. Researchers can request physical samples through an online request form and subsequent written proposal review process. This study addresses two core research objectives: streamlining the NBISC sample lifecycle processes and strategizing for managing an influx of 50,000 tissue samples from a series of cosmic radiation analog experiments carried out at the NASA Space Radiation Laboratory (NSRL) by Drs. Eleanor Chang (Lawrence Berkeley Laboratory) and Polly Blakely (SRI). The Chang/Blakely studies investigated Harderian gland (HG) tumorigenesis in mice exposed to low dose and LET radiation comprising 8 different exposure protocols in over 4000 mice. NBISC sample metadata is stored in a Laboratory Information Management System (SLIMS). To streamline sample data entry, we customize python scripts using information extracted from the individual experimental protocols. The scripts automate entry into multiple SLIMS data fields including protocol name, unique sample barcode, tissue and sub-tissue information, freezer location, sample preservation method, etc. The semi-automated procedure significantly decreases the time spent on data entry by several orders of magnitude. Automation and data organization are essential, as they free up time for curation and promotion of the collection which, in turn, increase the accessibility of samples to the broader research community. NBISC benefits from streamlined data ingestion, and the methodologies developed here are applicable to other projects which use SLIMS including the NASA Biospecimen Sharing Program and GeneLab. As of Fall 2023, plans include transferring sample data from SLIMS to public facing repositories (OSDR and NLSP), expanding the reach of the Chang/Blakely sample collection. The Human Research Program Space Radiation Element plans to transfer non-human tissues from many more investigations to NBISC in the coming year.

Biospecimen↗
DOE OSTI2015

Augmenting Traditional Static Analysis With Commonly Available Metadata

Developers and security analysts have been using static analysis for a long time to analyze programs for defects and vulnerabilities with some success. Generally a static analysis tool is run on the source code for a given program, flagging areas of code that need to be further inspected by a human analyst. These areas may be obvious bugs like potential bu er over flows, information leakage flaws, or the use of uninitialized variables. These tools tend to work fairly well - every year they find many important bugs. These tools are more impressive considering the fact that they only examine the source code, which may be very complex. Now consider the amount of data available that these tools do not analyze. There are many pieces of information that would prove invaluable for finding bugs in code, things such as a history of bug reports, a history of all changes to the code, information about committers, etc. By leveraging all this additional data, it is possible to nd more bugs with less user interaction, as well as track useful metrics such as number and type of defects injected by committer. This dissertation provides a method for leveraging development metadata to find bugs that would otherwise be difficult to find using standard static analysis tools. We showcase two case studies that demonstrate the ability to find 0day vulnerabilities in large and small software projects by finding new vulnerabilities in the cpython and Roundup open source projects.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Data compression with inline compression metadata

Techniques for handling data compression in which metadata that indicates which portions of data are compressed are which portions of data are not compressed are disclosed. Segments of a buffer referred to as block groups store compressed blocks of data along with uncompressed blocks of data and hash blocks. If a block group includes a block that is a hash of another block in the block group, then the other block is considered to be compressed. If the block group does not include a block that is a hash of another block in the block group, then the blocks in the block group are uncompressed. The hash function to generate the hash is selected to prevent “collisions,” which occur when the data being stored in the buffer is such that it is possible for a hash block and an uncompressed block to be the same.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Method and system for reducing metadata overhead in a two-tier storage architecture

Example embodiments of the present invention relate to a method, a system, and a computer program product for maintaining dynamically loadable namespaces. The method includes presenting, to an application, a file system having a global single namespace (SN) comprising a plurality of dynamically-loadable namespaces (DLNs) maintained in a capacity tier (CT) of object storage of a storage system. In response to a job submitted by the application, dynamically loading a first dynamically-loadable namespace, including the metadata only for the first dynamically-loadable namespace, associated with the job from the capacity tier of object storage into a fast tier (FT) of storage of the storage system.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

KBase Credit Metadata Schema

As part of KBase’s commitment to promote open science, we offer users the ability to obtain a DOI (Digital Object Identifier) for their work, which can then be cited in an associated science publication. To further support the community-wide shift towards FAIR (Findable, Accessible, Interoperable, Reusable) data, KBase is expanding our data descriptors so that KBase DOIs have comprehensive citations for datasets, in addition to referencing publications or software used in the workflow. This helps encourage a culture of giving attribution for all research inputs and outputs; standard practice for literature, but still relatively new for software products or datasets. It also promotes open science by building trust that contributors get credit for their work, and accelerates knowledge discovery by supporting and incentivizing the release of data.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2023

Using electronic health record metadata to predict housing instability amongst veterans

Housing instability is considered a significant life stressor and preemptive screening should be applied to identify those at risk for homelessness as early as possible so that they can be targeted for specialized care. We developed models to classify patient outcomes for an established VA Homelessness Screening Clinical Reminder (HSCR), which identifies housing instability, in the two months prior to its administration. Logistic Regression and Random Forest models were fit to classify responses using the last 18 months of document activity. We measure concentration of risk across stratifications of predicted probability and observe an enriched likelihood of finding confirmed false negative responses from veterans with diagnosed housing instability. Positive responses were 34 times more likely to be detected within the top 1 % of patients predicted at risk than from those randomly selected. There is a 1 in 4 chance of detecting false negatives within the top 1 % of predicted risk. Machine learning methods can classify between episodes of housing instability using a data-driven approach that does not rely on variables curated from domain experts. This method has the potential to improve clinicians’ ability to identify veterans who are experiencing housing instability but are not captured by HSCR.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

Seismic Survey 2016 Metadata at San Emidio, Nevada

1301 Vertical Component seismic instruments were deployed at San Emidio Geothermal field in Nevada in December 2016. The first record starts at 2016-12-05T02:00:00.000000Z (UTC) and the last record ends at 2016-12-11T14:00:59.998000Z (UTC). Data are stored in individual files in one-minute increments. Data includes seismic station locations, seismic data logger specifications, instrumentation specifications, descriptions of data, a fracture finding summary and the final report for the 2016 WHOLESCALE seismic survey done in San Emidio, Nevada.

15 GEOTHERMAL ENERGY↗
NASA NTRS2015

Restoration of the Apollo Heat Flow Experiments Metadata

Geothermal heat flow probes were deployed on the Apollo 15 and 17 missions as part of the Apollo Lunar Surface Experiments Package (ALSEP). At each landing site, the astronauts drilled 2 holes, 10-m apart, and installed a probe in each. The holes were 1- and 1.5-m deep at the Apollo 15 site and 2.5-m deep at the Apollo 17 sites. The probes monitored surface temperature and subsurface temperatures at different depths. At the Apollo 15 site, the monitoring continued from July 1971 to January 1977. At the Apollo 17 site, it did from December 1972 to September 1977. Based on the observations made through December 1974, Marcus Langseth, the principal investigator of the heat flow experiments (HFE), determined the thermal conductivity of the lunar regolith by mathematically modeling how the seasonal temperature fluctuation propagated down through the regolith. He also determined the temperature unaffected by diurnal and seasonal thermal waves of the regolith at different depths, which yielded the geothermal gradient. By multiplying the thermal gradient and the thermal conductivity, Langseth obtained the endogenic heat flow of the Moon as 21 mW/m(exp 2) at Site 15 and 16 mW/m(exp 2) at Site 17.

HFE metadata↗