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At least 217 records · Page 12
All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Recent Progress in OVERFLOW Convergence Improvements

Improvements have been made to the implicit symmetric successive overrelaxation algorithm in the OVERFLOW 2.3 structured, overset grid, computational fluid dynamics flow solver. These improvements, consisting of implicit boundary conditions, improved flux Jacobian linearizations, and CFL number ramping, are a series of evolutionary changes to the linear solver that have resulted in increased nonlinear convergence rates and faster time to solution. A series of test cases are presented that demonstrate the effect of the changes through comparison with the original SSOR path and other linear solver implementations within OVERFLOW.

Joseph M Derlaga↗
DOE OSTI2023

Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome

' Candidatus Methanophagales' (ANME-1) is an order-level clade of archaea responsible for anaerobic methane oxidation in deep-sea sediments. The diversity, ecology and evolution of ANME-1 remain poorly understood. In this study, we use metagenomics on deep-sea hydrothermal samples to expand ANME-1 diversity and uncover the effect of virus–host dynamics. Phylogenetic analyses reveal a deep-branching, thermophilic family, ' Candidatus Methanospirareceae', closely related to short-chain alkane oxidizers. Global phylogeny and near-complete genomes show that hydrogen metabolism within ANME-1 is an ancient trait that was vertically inherited but differentially lost during lineage diversification. Metagenomics also uncovered 16 undescribed virus families so far exclusively targeting ANME-1 archaea, showing unique structural and replicative signatures. The expansive ANME-1 virome contains a metabolic gene repertoire that can influence host ecology and evolution through virus-mediated gene displacement. Our results suggest an evolutionary continuum between anaerobic methane and short-chain alkane oxidizers and underscore the effects of viruses on the dynamics and evolution of methane-driven ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

From disorganized data to emergent dynamic models: Questionnaires to partial differential equations

Starting with sets of disorganized observations of spatially varying and temporally evolving systems, obtained at different (also disorganized) sets of parameters, we demonstrate the data-driven derivation of parameter dependent, evolutionary partial differential equation (PDE) models capable of generating the data. This tensor type of data is reminiscent of shuffled (multidimensional) puzzle tiles. The independent variables for the evolution equations (their “space” and “time”) as well as their effective parameters are all emergent , i.e. determined in a data-driven way from our disorganized observations of behavior in them. We use a diffusion map based questionnaire approach to build a smooth parametrization of our emergent space/time/parameter space for the data. This approach iteratively processes the data by successively observing them on the “space,” the “time” and the “parameter” axes of a tensor. Once the data become organized, we use machine learning (here, neural networks) to approximate the operators governing the evolution equations in this emergent space. Our illustrative examples are based (i) on a simple advection–diffusion model; (ii) on a previously developed vertex-plus-signaling model of Drosophila embryonic development; and (iii) on two complex dynamic network models (one neuronal and one coupled oscillator model) for which no obvious smooth embedding geometry is known a priori. This allows us to discuss features of the process like symmetry breaking, translational invariance, and autonomousness of the emergent PDE model, as well as its interpretability.

generative models↗
NASA NTRS1993

A new approach to the study of the turbulence layer

Turbulent thermal convection is of considerable importance in fluid dynamical transport phenomena occurring, for example, in the planetary boundary layer of the Earth, the interiors of stars, and accretion disks. In particular, during a significant portion of the evolutionary phase of many stars having convectively unstable cores or outer envelopes, a substantial fraction of energy is transported from the central layers to the outer layers by thermal convection. Moreover, as much of the interior of a star is in highly turbulent motion, a complete theory of stellar structure and evolution requires the explicit consideration of turbulence in order to have expressions for the turbulent quantities arising in the stellar structure equations, and particularly, the turbulent fluxes that appear in the total flux conservation equation, such as the convective flux, kinetic energy flux, etc. A reliable quantification of these fluxes continues to present a challenge in astrophysical fluid dynamics, primarily because astrophysical turbulence is almost always fully-developed and nearly inviscid, and therefore governed by strong nonlinear interactions that distribute the energy among a very wide spectrum of eddies with scales ranging from the characteristic dimension of the flow to those sufficiently small to be affected by viscous dissipation. Furthermore, astrophysical flows are invariably compressible, anisotropic, and inhomogeneous, which requires the consideration of the dynamics of longitudinal modes and their interaction with the transverse modes, as well as complicated boundary conditions. In order to reach a compromise between analytical and numerical tractability and the basic physics of turbulent convection, we have constructed a model of stationary turbulent convection that yields various turbulence statistics, including the convective flux, that are required in stellar evolution models.

Levenson, Ruth A.↗
NASA NTRS1993

Dynamical instability as the cause of the massive outbursts in Eta Carinae and other luminous blue variables

A new type of stellar envelope structure has been computationally discovered at very high stellar masses. The outer part of the envelope resembles a nearly detached, diffusely filled shell overlying an ultrahot surface of small radius. This structural anomaly is caused by a large iron bump occurring in the new opacities of Iglesias et al. (1992). The new stellar models with normal metallicity encounter a strong ionization-induced dynamical instability in the outer envelope as they rapidly transit the H-R diagram after the end of central hydrogen burning. Preliminary evolutionary and hydrodynamical calculations successfully mimic the most basic observed properties of Eta Carinae and other very luminous blue variables. The Humphreys-Davidson sloped line in the H-R diagram, however, seems to be unrelated to these variables, and is instead the observed terminus of the main-sequence phase of evolution if convective core overshooting is insignificant.

Stothers, Richard B.↗
NASA NTRS1995

Multiple rings around Wolf-Rayet evolution

We present optical narrow-band imaging of multiple rings existing around galactic Wolf-Rayet (WR) stars. The existence of multiple rings of material around Wolf-Rayet stars clearly illustrates the various phases of evolution that massive stars go through. The objects presented here show evidence of a three stage evolution. O stars produce an outer ring with the cavity being partially filled by ejecta from a red supergiant of luminous blue variable phase. A wind from the Wolf-Rayet star then passes into the ejecta materials. A simple model is presented for this three stage evolution. Using observations of the size and dynamics of the rings allows estimates of time scales for each stage of the massive star evolution. These are consistent with recent theoretical evolutionary models. Mass estimates for the ejecta, from the model presented, are consistent with previous ring nebula mass estimates from IRAS data, showing a number of ring nebulae to have large masses, most of which must in be in the form of neutral material. Finally, we illustrate how further observations will allow the determination of many of the parameters of the evolution of massive stars such as total mass loss, average mass loss rates, stellar abundances, and total time spent in each evolutionary phase.

Marston, A. P.↗
NASA NTRS2004

Masses and Luminosities of X-Ray Binaries

Using SIM, we will perform narrow-angle observations of several X-ray binaries to determine their orbits, and we will observe about 50 X-ray binary systems in wide-angle mode to measure their distances and proper motions. Sources with mass estimates for the compact component of greater than 3 solar masses are generally called black hole candidates since this mass is above the theoretical neutron star limit. Narrow-angle observations of these sources provide a direct test of the dynamical mass estimates on which the black hole evidence is based. Better measurements of the black hole masses will provide constraints on possible evolutionary paths that lead to black hole formation. When combined with X-ray data, mass measurements may provide additional constraints on the black hole spin. Precise mass determinations of neutron star systems can address the question of whether neutron stars can be significantly more massive than 1.4 solar masses, which would eliminate soft models of the neutron star equations of state. The wide-angle observations will probe the Galactic distribution of X-ray binaries through parallaxes and proper motions. They will also eliminate the uncertainties in the luminosities of individual sources, which is currently up to a full order of magnitude. This will enable more detailed comparisons of X-ray observations to physical models such as advection-dominated accretion flows (ADAFs). We intend to carry out the following measurements: 1) Determine the orbits of two black hole candidates to measure the black hole masses; 2) Obtain precise mass measurements for two neutron star systems to constrain neutron star equations of state; 3) Determine the distances and thus luminosities of selected representatives of various classes of X-ray binaries (black hole candidates, neutron stars, jet sources); 4) In the process of distance determination, proper motions will also be measured, from which the age of the population can be estimated.

Quirrenbach, Andreas↗
DOE OSTI2022

Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics

Background: DNA methylation in prokaryotes is involved in many different cellular processes including cell cycle regulation and defense against viruses. To date, most prokaryotic methylation systems have been studied in culturable microorganisms, resulting in a limited understanding of DNA methylation from a microbial ecology perspective. Here, we analyze the distribution patterns of several microbial epigenetics marks in the ocean microbiome through genome-centric metagenomics across all domains of life. Results: We reconstructed 15,056 viral, 252 prokaryotic, 56 giant viral, and 6 eukaryotic metagenome-assembled genomes from northwest Pacific Ocean seawater samples using short- and long-read sequencing approaches. These metagenome-derived genomes mostly represented novel taxa, and recruited a majority of reads. Thanks to single-molecule real-time (SMRT) sequencing technology, base modification could also be detected for these genomes. This showed that DNA methylation can readily be detected across dominant oceanic bacterial, archaeal, and viral populations, and microbial epigenetic changes correlate with population differentiation. Furthermore, our genome-wide epigenetic analysis of Pelagibacter suggests that GANTC, a DNA methyltransferase target motif, is related to the cell cycle and is affected by environmental conditions. Yet, the presence of this motif also partitions the phylogeny of the Pelagibacter phages, possibly hinting at a competitive co-evolutionary history and multiple effects of a single methylation mark. Conclusions: Overall, this study elucidates that DNA methylation patterns are associated with ecological changes and virus-host dynamics in the ocean microbiome.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1981

Space Construction Experiment Definition Study (SCEDS), part 1. Volume 1: Executive summary

Definition was completed on a basic flight experiment which will provide data on the construction of large space systems from the orbiter which could not be practicably obtained from ground tests. Dynamic behavior of a representative large structure was predicted. On-orbit construction operations were studied. Orbiter control during and after construction was investigated. Evolutionary or supplemental flight experiments for the development of augmentation of a basic flight experiment were identified and defined.

Source record↗
NASA NTRS1988

Stability of radiative shocks with time-dependent cooling

A full evolutionary calculation of ion abundances and radiative cooling has been incorporated into an accurate one-dimensional gasdynamics calculation in order to investigate the dynamics of radiative shock instability and to determine the extent to which power-law cooling models describe the situation. Radiative shocks are shown to be unstable for velocities of greater than about 140 km/s. The temperature dependence of cooling functions behind steady shocks suggests that the stability limit may depend upon the amplitude of the perturbation. Oscillation is noted in the fundamental oscillation mode.

Gaetz, T. J.↗
NASA NTRS2005

Coordinating Multi-Rover Systems: Evaluation Functions for Dynamic and Noisy Environments

This paper addresses the evolution of control strategies for a collective: a set of entities that collectively strives to maximize a global evaluation function that rates the performance of the full system. Directly addressing such problems by having a population of collectives and applying the evolutionary algorithm to that population is appealing, but the search space is prohibitively large in most cases. Instead, we focus on evolving control policies for each member of the collective. The fundamental issue in this approach is how to create an evaluation function for each member of the collective that is both aligned with the global evaluation function and is sensitive to the fitness changes of the member, while relatively insensitive to the fitness changes of other members. We show how to construct evaluation functions in dynamic, noisy and communication-limited collective environments. On a rover coordination problem, a control policy evolved using aligned and member-sensitive evaluations outperfoms global evaluation methods by up to 400%. More notably, in the presence of a larger number of rovers or rovers with noisy and communication limited sensors, the proposed method outperforms global evaluation by a higher percentage than in noise-free conditions with a small number of rovers.

Turner, Kagan↗
NASA NTRS1995

On-line access to weather satellite imagery and image manipulation software

Advanced Very High Resolution Radiometer and Geostationary Operational Environmental Satellite imagery, received by antennas located at the University of Colorado, are made available to the Internet users through an on-line data access system. Created as a 'test bed' system for the National Aeronautics and Space Administration's future Earth Observing System Data and Information System, this test bed provides an opportunity to test both the technical requirements of an on-line data system and the different ways in which the general user community would employ such a system. Initiated in December 1991, the basic data system experiment four major evolutionary changes in response to user requests and requirements. Features added with these changes were the addition of on-line browse, user subsetting, and dynamic image processing/navigation. Over its lifetime the system has grown to a maximum of over 2500 registered users, and after losing many of these users due to hardware changes, the system is once again growing with its own independent mass storage system.

Emery, W.↗
NASA NTRS1995

On-Line Access to Weather Satellite Imagery and Image Manipulation Software

Advanced Very High Resolution Radiometer and Geostationary Operational Environmental Satellite Imagery, received by antennas located at the University of Colorado, are made available to the Internet users through an on-line data access system. Created as a 'test bed' data system for the National Aeronautics and Space Administration's future Earth Observing System Data and Information System, this test bed provides an opportunity to test both the technical requirements of an on-line data system and the different ways in which the general user community would employ such a system. Initiated in December 1991, the basic data system experienced four major evolutionary changes in response to user requests and requirements. Features added with these changes were the addition of on-line browse, user subsetting, and dynamic image processing/navigation. Over its lifetime the system has grown to a maximum of over 2500 registered users, and after losing many of these users due to hardware changes, the system is once again growing with its own independent mass storage system.

Emery, William J.↗
NASA NTRS2019

Habitable Climate Scenarios for Proxima Centauri B with a Dynamic Ocean

The nearby exoplanet Proxima Centauri b will be a prime future target for characterization, despite questions about its retention of water. Climate models with static oceans suggest that Proxima b could harbor a small dayside surface ocean despite its weak instellation. We present the first climate simulations of Proxima b with a dynamic ocean. We find that an ocean-covered Proxima b could have a much broader area of surface liquid water but at much colder temperatures than previously suggested, due to ocean heat transport and/or depression of the freezing point by salinity. Elevated greenhouse gas concentrations do not necessarily produce more open ocean because of dynamic regime transitions between a state with an equatorial Rossby-Kelvin wave pattern and a state with a day-night circulation. For an evolutionary path leading to a highly saline ocean, Proxima b could be an inhabited, mostly open ocean planet with halophilic life. A fresh water ocean produces a smaller liquid region than does an Earth salinity ocean. An ocean planet in 3:2 spin-orbit resonance has a permanent tropical waterbelt for moderate eccentricity. A larger vs. smaller area of surface liquid water for similar equilibrium temperature may be distinguishable using the amplitude of the thermal phase curve. Simulations of Proxima Centauri b may be a model for the habitability of weakly irradiated planets orbiting slightly cooler or warmer stars, e.g., in the TRAPPIST-1, LHS 1140, GJ 273, and GJ 3293 systems.

Aquaplanet↗
NASA NTRS1993

Planetary accretion in circumstellar disks

The formation of terrestrial planets and the cores of Jovian planets is reviewed in the framework of the planetesimal hypothesis, wherein planets are assumed to grow via the pairwise accumulation of small solid bodies. Emphasis is placed on the dynamics of solid body accretion from kilometer size planetesimals to terrestrial type planets. This stage of planetary growth is least dependent on the characteristics of the evolutionary state of the central star. It is concluded that the evolution of the planetesimal size distribution is determined by the gravitationally enhanced collision cross-section, which favors collisions between planetesimals with smaller velocities. Runaway growth of the largest planetesimal in each accretion zone appears to be a likely outcome. The subsequent accumulation of the resulting protoplanets leads to a large degree of radial mixing in the terrestrial planet region, and giant impacts are probable.

Lissauer, Jack J.↗
NASA NTRS2011

The Merger History, AGN and Dwarf Galaxies of Hickson Compact Group 59

Compact group galaxies often appear unaffected by their unusually dense environment. Closer examination can, however, reveal the subtle, cumulative effects of multiple galaxy interactions. Hickson Compact Group (HCG) 59 is an excellent example of this situation. We present a photometric study of this group in the optical (HST), infrared (Spitzer) and X-ray (Chandra) regimes aimed at characterizing the star formation and nuclear activity in its constituent galaxies and intra-group medium. We associate five dwarf galaxies with the group and update the velocity dispersion, leading to an increase in the dynamical mass of the group of up to a factor of 10 (to 2.8 x 10(exp 13) Stellar Mass), and a subsequent revision of its evolutionary stage. Star formation is proceeding at a level consistent with the morphological types of the four main galaxies, of which two are star-forming and the other two quiescent. Unlike in some other compact groups, star-forming complexes across HCG 59 closely follow mass-radius scaling relations typical of nearby galaxies. In contrast, the ancient globular cluster populations in galaxies HCG 59A and B show intriguing irregularities, and two extragalactic HII regions are found just west of B. We age-date a faint stellar stream in the intra-group medium at approx. 1 Gyr to examine recent interactions. We detect a likely low-luminosity AGN in HCG 59A by its approx. 10(exp 40) erg/s X-ray emission; the active nucleus rather than star formation can account for the UV+IR SED. We discuss the implications of our findings in the context of galaxy evolution in dense environments.

Konstantopoulos, I. S.↗
NASA NTRS2005

Evolving Multi Rover Systems in Dynamic and Noisy Environments

In this chapter, we address how to evolve control strategies for a collective: a set of entities that collectively strives to maximize a global evaluation function that rates the performance of the full system. Addressing such problems by directly applying a global evolutionary algorithm to a population of collectives is unworkable because the search space is prohibitively large. Instead, we focus on evolving control policies for each member of the collective, where each member is trying to maximize the fitness of its own population. The main difficulty with this approach is creating fitness evaluation functions for the members of the collective that induce the collective to achieve high performance with respect to the system level goal. To overcome this difficulty, we derive member evaluation functions that are both aligned with the global evaluation function (ensuring that members trying to achieve high fitness results in a collective with high fitness) and sensitive to the fitness of each member (a member's fitness depends more on its own actions than on actions of other members). In a difficult rover coordination problem in dynamic and noisy environments, we show how to construct evaluation functions that lead to good collective behavior. The control policy evolved using aligned and member-sensitive evaluations outperforms global evaluation methods by up to a factor of four. in addition we show that the collective continues to perform well in the presence of high noise levels and when the environment is highly dynamic. More notably, in the presence of a larger number of rovers or rovers with noisy sensors, the improvements due to the proposed method become significantly more pronounced.

Tumer, Kagan↗