Methods to Discover New Photocathode Materials using Machine Learning and Data-Driven Screening
This poster poster is accepted to be presented at the upcoming International Particle Accelerator Conference (www.ipac23.org)
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This poster poster is accepted to be presented at the upcoming International Particle Accelerator Conference (www.ipac23.org)
Final report for SPPSi project in Thrust One Friction extrusion is a thermomechanical process that combines conventional extrusion with the action of a rotating die. The plastic deformation of the material being sheared and extruded is the primary source of process heat and it produces strain distributions unlike those resulting from conventional extrusion. This paper proposes an improved strain analysis that evaluates three main strain components in a series of rate-controlled friction extrusions in which the steady state was achieved. Cylindrical AA1100 extrusion billets with two embedded markers were extruded to wire with a 10:1 diametral reduction. The shape change of the embedded markers was determined via serial, transverse sectioning and quantitative metallography of the extruded wires. Three mutually orthogonal strain components (longitudinal, circumferential, and radial) were calculated at different positions along each extruded wire from the marker's shape change. The development of strain from the initial transient to the steady state is discussed. The variation of the steady-state strain with different process parameters is correlated with the die advance per revolution.
On July 16, 1945, at 5:29 a.m., a team of Los Alamos scientists successfully detonated the world’s first atomic bomb at a remote section of south-central New Mexico desert, then known as the Alamogordo Bombing Range. This full-scale test, dubbed “Trinity” by the Lab’s first Director J. Robert Oppenheimer, proved the viability of the implosion-type bomb known as The Gadget and ushered in the Atomic Age. Three weeks after Trinity, two Los-Alamos created atomic weapons – Little Boy and Fat Man – were released above Japan, helping to end World War II and changing the course of history forever.
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Profound puzzles, such as the nature of dark matter, the origins of the electroweak scale, the mechanism behind the small neutrino mass, and the strong CP problem, suggested new physics beyond the Standard Model and drove the particle physics program in search of the associated new particles. Despite extensive searches, conventional realizations of new physics have not yet provided conclusive evidence. This raised the serious possibility that new dynamics might be more elusive, perhaps due to a richer gauge and matter structure than previously considered. Notably, the existence of dark matter and advancements in understanding the naturalness problem urged exploration into sectors with complex gauge and matter structures. Through experiments like the LHC, DUNE, and small-scale experiments, the robust US HEP program played a critical role in pursuing these well-motivated but under-explored scenarios for new physics. I explored these physics opportunities in depth, focusing on novel searches and significant improvements in parameter space coverage. The elusive dynamics revealed rich information about the underlying theory and were essential in identifying observable opportunities. Understanding the observable consequences required a deep comprehension of the theory, which I also developed. The proposal included essential components aimed at coherently increasing our knowledge in well-motivated elusive dynamics models. Through research on high-quality axions, composite neutrinos, the Higgs boson as a portal to hidden strong dynamics, and new scalar potentials to generate alternative electroweak phase transitions, I focused on identifying new signatures and parameter regions in plausible elusive dynamics models. The exploration emphasized generic possibilities motivated by broad classes of elusive dynamics models. These signatures were not effectively probed previously due to various challenges such as triggering, background suppression, or experimental design. My research involved close interaction with experimental colleagues to overcome these difficulties, leveraging new theoretical and experimental possibilities. These efforts included identifying new observables such as timing information and substructure in calorimetries, new multiple-hit techniques, new scattering events, and new resonance searches in liquid argon detectors. This work created a positive feedback loop: theory and experimental work inspired each other, revealing new exciting opportunities that supported both programs.
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Through this grant, we developed a comparative framework to elucidate the mechanisms behind variations in environmental stress responses among a diverse group of species within the Brassicaceae family. Our focus was on the differences in physiological and transcriptomic responses to abscisic acid (ABA), a hormone associated with water stress. We examined the differential growth responses of four Brassicaceae species, finding that most exhibited reduced root growth correlated with smaller meristem size. In contrast, Schrenkiella parvula showed accelerated growth due to increased root cell elongation. We employed RNA sequencing to analyze the transcriptional responses to ABA across these species, and innovative bioinformatics techniques were used to pinpoint biological pathways with significant divergence. Additionally, we utilized DAP-seq to map the gene regulatory networks associated with ABAresponsive transcription factors, revealing that variations in the regulation of growth hormone biosynthesis play a critical role in the distinct ABA effects on root growth among the species. This research sets a new standard for comparative physiology by integrating comparative genomics and transcriptomics to uncover pathway divergences.
Cosmological observations and galaxy dynamics seem to imply that five out of six parts in mass of all matter in the universe is composed of dark matter, which is not accounted for by the Standard Model of particles. The cold dark matter (CDM) paradigm has been extremely successful at describing observations on large-cosmological scale. However, many different dark matter candidates have the same observable effects as CDM on large-length scales. One possible avenue to distinguish between these different models is to look on much smaller-length scales, where usually dark matter models become distinguishable. This research developed the theoretical framework and statistical tools needed to map the detailed distribution of dark matter on subgalactic scales using strong gravitational lensing. A second goal of this research was to build new statistical techniques that efficiently exploit the full power of cosmic-structure data from next-generation surveys. Galaxy clustering on large scales provides significant cosmological information through the power spectrum. Additional information can be gained from higher-order statistics. This research provided new ways to understand the initial conditions of the universe from current and upcoming cosmological surveys.
This research aimed to enhance our understanding of cosmic structure formation in the presence of neutrinos and exotic matter, improve cosmic constraints on neutrino mass, and explore new physics beyond the Standard Model. Major accomplishments include a comprehensive study of dark radiation interactions, theoretical work on neutrino wakes, the development of an improved fluid approximation for massive neutrinos, and deeper insights into nonlinear structure formation. Two graduate students received extensive training, contributing to multiple publications and presentations. The research findings have been widely disseminated through journal publications, conferences and collaborations.
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The major goals of this work are twofold: (1) to enable transformative basic understanding of structure-property-performance relationships governing oxygen transport in oxygen-active materials and (2) facilitate the discovery and rational design of new oxygen-active materials which transport oxygen efficiently at low temperature. Transformative understanding and materials design will be accomplished by synergistically combining materials data mining, machine learning, high-throughput computation and targeted experiments.
The original proposal described an interdisciplinary team spanning UC San Diego (lead), Columbia University, and UC Irvine, with Columbia investigators including Pierre Gentine, Elias Bareinboim, and Marcus van Lier-Walqui. The proposal further specified a leadership structure in which Columbia co-investigators contributed across the three aims, with Co-PI Gentine serving as a point of contact with science teams and with responsibilities distributed across aims.
Seafloor hydrothermalism plays a critical role in fundamental interactions between geochemical and biological processes in the deep ocean. A significant number of hydrothermal vents are hypothesized to exist, but many of these remain undiscovered due in part to the difficulty of detecting hydrothermalism using standard sensors on rosettes towed in the water column or robotic platforms performing surveys. Here, we use in situ methane sensors to complement standard sensing technology for hydrothermalism discovery and compare sensors on a towed rosette and an autonomous underwater vehicle (AUV) during a 17 km long transect in the Northern Guaymas Basin in the Gulf of California. This transect spatially intersected with a known hydrothermally active venting site. These data show that methane signalled possible hydrothermal-activity 1.5–3 km laterally (100–150 m vertically) from a known vent. Methane as a signal for hydrothermalism performed similarly to standard turbidity sensors (plume detection 2.2–3.3 km from reference source), and more sensitively and clearly than temperature, salinity, and oxygen instruments which readily respond to physical mixing in background seawater. We additionally introduce change-point detection algorithms—streaming cross-correlation and regime identification—as a means of real-time hydrothermalism discovery and discuss related data supervision technologies that could be used in planning, executing, and monitoring explorative surveys for hydrothermalism.
Multi-parent populations contain valuable genetic material for dissecting complex, quantitative traits and provide a unique opportunity to capture multi-allelic variation compared to the biparental populations. A multi-parent advanced generation inter-cross (MAGIC) B-line (MBL) population composed of 708 F 6 recombinant inbred lines (RILs), was recently developed from four diverse founders. These selected founders strategically represented the four most prevalent botanical races (kafir, guinea, durra, and caudatum) to capture a significant source of genetic variation to study the quantitative traits in grain sorghum [Sorghum bicolor (L.) Moench]. MBL was phenotyped at two field locations for seven yield-influencing traits: panicle type (PT), days to anthesis (DTA), plant height (PH), grain yield (GY), 1000-grain weight (TGW), tiller number per meter (TN) and yield per panicle (YPP). High phenotypic variation was observed for all the quantitative traits, with broad-sense heritabilities ranging from 0.34 (TN) to 0.84 (PH). The entire population was genotyped using Diversity Arrays Technology (DArTseq), and 8,800 single nucleotide polymorphisms (SNPs) were generated. A set of polymorphic, quality-filtered markers (3,751 SNPs) and phenotypic data were used for genome-wide association studies (GWAS). We identified 52 marker-trait associations (MTAs) for the seven traits using BLUPs generated from replicated plots in two locations. We also identified desirable allelic combinations based on the plant height loci (Dw1, Dw2, and Dw3), which influences yield related traits. Additionally, two novel MTAs were identified each on Chr1 and Chr7 for yield traits independent of dwarfing genes. We further performed a multi-variate adaptive shrinkage analysis and 15 MTAs with pleiotropic effect were identified. The five best performing MBL progenies were selected carrying desirable allelic combinations. Since the MBL population was designed to capture significant diversity for maintainer line (B-line) accessions, these progenies can serve as valuable resources to develop superior sorghum hybrids after validation of their general combining abilities via crossing with elite pollinators. Further, newly identified desirable allelic combinations can be used to enrich the maintainer germplasm lines through marker-assisted backcross breeding.
Introduction: Evolution or emergence of a new viral variant is a significant public health concern. Alphaviruses, such as Venezuelan equine encephalitis virus (VEEV), are mosquito-borne viruses which are becoming more prevalent due to expansion of vector habitats. Despite this, there are currently no antiviral therapies or FDA-approved vaccines available to treat or prevent VEEV infection. The increased prevalence of such viruses provides opportunities for novel variants to evolve. Key therapeutic molecules that could be developed against viral pathogens are recombinant antibodies or antibody fragments, such as the variable heavy domain of heavy chain antibodies (V H Hs). Methods: In vitro selections offer a promising pathway for identification of therapeutic antibodies, here we explored isolation of V H Hs using phage and yeast display methodology with three antigen formats 1) recombinant E2, 2) linear peptides of E2, selected based on molecular dynamics analysis, and 3) UV inactivated virus. Results: Here we report four novel “human” V H Hs which bind to the VEEV E2 protein selected using different strategies that include both computational and biochemical design of suitable antigens and whole virus selections. These V H Hs have distinct complementarity-determining regions (CDRs). Multiple VHHs bind to the VEEV viral particles in ELISAs, and we report the peptide epitope recognized by these V H Hs. Discussion: Though non-neutralizing, these V H Hs bind to and sequester VEEV viral particles preventing infection, demonstrating the potential of these V H Hs to perform viral “sponging” which represents a novel therapeutic approach. The selection strategies we report may have applications to further antibody developments against other viruses.