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At least 217 records · Page 12

Transplatformer: translating toxicogenomic profiles between generations of platforms

Background Transcriptomic profiling technologies have advanced the analysis of biological and toxicological responses. However, substantial differences in probe design, dynamic range, gene coverage, and preprocessing pipelines across platforms introduce artifacts that limit cross-study integration and hinder the reuse of historical datasets. We aim to develop computational methods for accurate cross-platform translation to maximize the value of legacy resources. Results We present TransPlatformer a deep learning framework for translating gene expression profiles across heterogeneous toxicogenomics platforms. TransPlatformer employs a novel attention-based architecture to map high-dimensional fold-change vectors from legacy microarray technologies to current platforms. Models are trained and evaluated using DrugMatrix, spanning three technological generations. We investigate mixed-tissue, single-tissue, and cross-tissue training paradigms and benchmark performance against multilayer perceptron and matrix-completion baselines. In mixed-tissue training, TransPlatformer achieves a greater than 50% reduction in mean absolute error (0.043 vs. 0.09) and nearly doubles Pearson correlation ( ≈ 0.71 vs. 0.37) relative to baseline methods. Importantly, TransPlatformer preserves rare but biologically meaningful over- and under-expressed signals, with mean absolute error below 0.22. Single-tissue models yield further improvements for well-represented organs, such as a 10% reduction in liver mean absolute error, while underscoring the need for data augmentation strategies in low-sample tissues.ra Conclusions TransPlatformer provides an effective and scalable computational solution for cross-platform transcriptomic translation. By enabling biologically faithful harmonization of gene expression data, the proposed approach facilitates the reuse of legacy toxicogenomics datasets, enhances downstream biomarker discovery, and supports more reproducible predictive modeling in toxicology.

59 BASIC BIOLOGICAL SCIENCES↗

Yttrium Hydride Post Irradiation Examination Plan

The overarching goal of the Department of Energy Office of Nuclear Energy (DOE-NE) microreactor program is to develop technologies for the deployment of civilian microreactors by stakeholders1. Microreactors are expressed as advanced transportable nuclear reactors operating at low power (<20MWth) but high temperatures (>600°C), as well as plug-and-play and inherently safe designs. One prerequisite of a microreactor is the compactness, so that a truck can transport the reactor under safe conditions with the current road infrastructure1,2. The compactness of these reactors likely can be attainable by use of solid components for the essentials of the nuclear core, such as fuel, core heat removal components, reflectors, and moderators. Among these essentials, where fuel enrichment must remain < 20% to meet High Assay Low Enrichment Uranium criteria (HALEU), the largest contribution to the compactness is offered by use of solid moderators which benefit from light atomic weight elements, such as hydrogen, carbon, and beryllium2. Among these, hydrogen-bearing materials, such as metal hydrides, are superior to other options from the lowest critical mass standpoint. Noting that, factors other than critical mass should be considered for a specific reactor design. Yttrium- or zirconium-based metal hydrides have been down-selected due to their neutronic performance. In addition to the neutronic perspective, maintaining hydrogen within the metal hydride is important at the high operating temperatures proposed by advanced reactors. Yttrium hydride (YHx) is, therefore, a proposed moderator material that offers better hydrogen retention at higher operating temperatures than zirconium hydrides due to higher retention and thermal stability of hydrogen in the metal3. The irradiated materials properties of metal hydrides, in this case YHx, must be assessed for the qualification of these moderators. Material testing and inspection processes must illustrate that the effects of dimensional and property changes on thermophysical and mechanical properties do not cause any significant changes on the microreactor safety, and the moderating power is maintained within design limits. Thus, the effect of irradiation on the thermophysical and mechanical properties must be determined. This post-irradiation examination (PIE) plan specifically aims to determine these properties for YHx following Advanced Test Reactor (ATR) irradiation.

99 GENERAL AND MISCELLANEOUS↗

3500-hour durability testing of ceramic materials for automotive gas turbine engines

A two-year durability program was performed by AiResearch Phoenix to evaluate four commercially available ceramic materials under simulated automotive gas turbine combustor discharge conditions. These conditions included extended cyclic thermal exposures up to 2500 F and 3500 hr. The four materials selected for evaluation were Norton NCX-34 hot pressed silicon nitride, AiResearch RBN 101 reaction bonded silicon nitride, Carborundum pressureless sintered alpha-SiC and Pure Carbon Co. (British Nuclear Fuels, Ltd.) Refel reaction sintered silicon carbide. These materials were initially exposed to 350 hr/1750 cycles at 1200 and 1370 C. Subsequent exposures to 1050, 2100 and 3500 hr were performed on those materials maintaining 50% of baseline strength after the initial exposure. Additional evaluations of exposed bars included dimensional and weight changes, dye penetrant, specific damping capacity changes, SEM fractography, and X-ray diffraction.

Carruthers, W. D.↗

Solar cycle changes in the polar solar wind

It is noted that although the 11 year solar cycle was first recognized in 1843, it is still only poorly understood. Further, while there are satisfactory models for the magnetic variations, the underlying physics is still obscure. New observations on the changing three-dimensional form of the solar wind are presented which help relate some of the modulations observed in geomagnetic activity, the ionosphere, and the flux of galactic cosmic rays.

Coles, W. A.↗

Diurnal variations of outgoing longwave radiation and albedo from ERBE scanner data

The scanning instruments of the Earth Radiation Budget Experiment provide measurements of instantaneous broadband albedo and outgoing longwave radiation (OLR) with a spatial resolution of about 50 km. Data from the Earth Radiation Budget Satellite (ERBS), which is in an orbit that precesses through local time at the rate of one hour every three days, can be used to describe the mean, hourly diurnal variations in the distribution of OLR and albedo on this scale. Much of this variation is caused by cloud type and amount changes. Two-dimensional histograms show the coevolution of OLR and albedo with the diurnal cycle, and the distribution of albedo-OLR pairings associated with the cloud distribution in a particular region and season. The albedo-OLR pairing characterizes a cloud type and determines its net effect on the energy balance at the top of the atmosphere. Diurnal variations in cloud type and amount in many regions are sufficient to cause substantial errors in radiation budget quantities and cloud properties estimated from observations taken from a single sun-synchronous orbit. Errors in estimated net radiation can be as large as 50 W/sq m for oceanic stratus regions and for land regions during summer.

Hartmann, Dennis L.↗

Improving the temperature performance of low-density ceramic heatshields through sol-gel processing

The performance of rigid insulations for use as thermal protection materials on reentry vehicles can be characterized by their resistance to dimensional and morphological change when exposed to an isothermal environment equivalent to that generated in entry. Improvements in these material characteristics for alumina-enhanced thermal barrier insulation by compositional modification through sol-gel processing are reported.

Bull, Jeffrey↗

Mixing in straight shear layers

Planar laser-induced fluorescence measurements were performed in a liquid plane mixing layer to extract the probability density function (pdf) of the mixture fraction of a passive scalar across the layer. Three Reynolds number (Re) cases were studied, 10,000, 33,000 and 90,000, with Re based on velocity difference and visual thickness. The results show that a non-marching pdf (central hump invariant from edge to edge of the layer) exists for Re = 10,000 but that a marching type pdf characterizes the Re = 33,000 and Re = 90,000 cases. For all cases, a broad range of mixture fraction values is found at each location across the layer. Streamwise and spanwise ramps across the layer, and structure-to-structure variation were observed and are believed to be responsible for the above behavior of the composition field. Tripping the boundary layer on the high-speed side of the splitter plate for each of the above three cases resulted in increased three-dimensionality and a change in the composition field. Average and average mixed fluid compositions are reported for all cases.

Karasso, P. S.↗

Modeling of the mechanical alloying process

Two programs have been developed to compute the dimensional and property changes that occur with repetitive impacts during the mechanical alloying process. The more sophisticated of the programs also maintains a running count of the fractions of particles present and from this calculates a population distribution. The programs predict powder particle size and shape changes in accord with the accepted stages of powder development during mechanical alloying of ductile species. They also predict hardness and lamellar thickness changes with processing, again with reasonable agreement with experimental results. These predictions offer support of the model (and thereby give insight into the possible 'actual' happenings of mechanical alloying) and hence allow refinement and calibration of the myriad aspects of the model. They also provide a vehicle for establishing control over the dimensions and properties of the output powders used for consolidation, thereby facilitating optimization of the consolidation process.

Maurice, D.↗

Three dimensional model calculations of the global dispersion of high speed aircraft exhaust and implications for stratospheric ozone loss

Two-dimensional (zonally averaged) photochemical models are commonly used for calculations of ozone changes due to various perturbations. These include calculating the ozone change expected as a result of change in the lower stratospheric composition due to the exhaust of a fleet of supersonic aircraft flying in the lower stratosphere. However, zonal asymmetries are anticipated to be important to this sort of calculation. The aircraft are expected to be restricted from flying over land at supersonic speed due to sonic booms, thus the pollutant source will not be zonally symmetric. There is loss of pollutant through stratosphere/troposphere exchange, but these processes are spatially and temporally inhomogeneous. Asymmetry in the pollutant distribution contributes to the uncertainty in the ozone changes calculated with two dimensional models. Pollutant distributions for integrations of at least 1 year of continuous pollutant emissions along flight corridors are calculated using a three dimensional chemistry and transport model. These distributions indicate the importance of asymmetry in the pollutant distributions to evaluation of the impact of stratospheric aircraft on ozone. The implications of such pollutant asymmetries to assessment calculations are discussed, considering both homogeneous and heterogeneous reactions.

Douglass, Anne R.↗

PLN-6268 Yttrium Hydride Post Irradiation Examination Plan

The overarching goal of the Department of Energy Office of Nuclear Energy (DOE-NE) microreactor program is to develop technologies for the deployment of civilian microreactors by stakeholders1. Microreactors are expressed as advanced transportable nuclear reactors operating at low power (<20MWth) but high temperatures (>600°C), as well as plug-and-play and inherently safe designs. One prerequisite of a microreactor is the compactness, so that a truck can transport the reactor under safe conditions with the current road infrastructure1,2. The compactness of these reactors likely can be attainable by use of solid components for the essentials of the nuclear core, such as fuel, core heat removal components, reflectors, and moderators. Among these essentials, where fuel enrichment must remain < 20% to meet High Assay Low Enrichment Uranium criteria (HALEU), the largest contribution to the compactness is offered by use of solid moderators which benefit from light atomic weight elements, such as hydrogen, carbon, and beryllium2. Among these, hydrogen-bearing materials, such as metal hydrides, are superior to other options from the lowest critical mass standpoint. Noting that, factors other than critical mass should be considered for a specific reactor design. Yttrium- or zirconium-based metal hydrides have been down-selected due to their neutronic performance. In addition to the neutronic perspective, maintaining hydrogen within the metal hydride is important at the high operating temperatures proposed by advanced reactors. Yttrium hydride (YHx) is, therefore, a proposed moderator material that offers better hydrogen retention at higher operating temperatures than zirconium hydrides due to higher retention and thermal stability of hydrogen in the metal3. The irradiated materials properties of metal hydrides, in this case YHx, must be assessed for the qualification of these moderators. Material testing and inspection processes must illustrate that the effects of dimensional and property changes on thermophysical and mechanical properties do not cause any significant changes on the microreactor safety, and the moderating power is maintained within design limits. Thus, the effect of irradiation on the thermophysical and mechanical properties must be determined. This post-irradiation examination (PIE) plan specifically aims to determine these properties for YHx following Advanced Test Reactor (ATR) irradiation.

99 GENERAL AND MISCELLANEOUS↗

Structure of three-dimensional turbulent boundary layers

The changes that occur in the Reynolds-stress-producing motion when a cross-stream pressure gradient is applied to an initially two-dimensional turbulent flow are discussed. Two examples are used: (1) a temporal simulation of a channel flow with crossflow applied by a spanwise pressure gradient for t is greater than 0; and (2) a spatial simulation of the boundary layer on an infinite swept wing. Evidence examined to date suggests that the structural changes in the two cases are similar, but the mechanisms may be significantly different, even if effects peculiar to the viscous wall region are ignored. The results from (2) are provisional, based on too short a time series for accurate statistical averages to be obtained. We treat turbulence 'statistics' (solutions of the Navier-Stokes equations in three space dimensions and time) in the same way as experiments: both have limitations of accuracy but both are acceptable representations of real fluid flows.

Bradshaw, P.↗

Flows over wings with leading-edge vortex separation

The unsteady cross flow analogy reduces the steady three dimensional separation flow problem into an unsteady two dimensional flow problem in which the section shape changes with time. The two dimensional VORSEP code is extended to the case of arbitrary body growth rates in order to generate the initial vortex structures for the three dimensional free vortex sheet (FVS) code. Automatic procedures to reduce the wing geometry definition to a set of cross flow plane sections corresponding to the locations of the time step solutions and to generate the effective source distribution on each cross flow section to represent the section normal growth across the following steps are incorporated in the VORSEP code. Also, the wake shedding model is improved by adopting a redistribution scheme which improves the stability of the free sheet development with time. The improved wake shedding model combined with the redistribution scheme alleviated the numerical instabilities associated with the vortex rollup.

Rao, B. M.↗

Aeroacoustic Assessment of Wind Plant Controls

The Aeroacoustic Assessment project aims to quantify changes in aeroacoustic noise generation by a utility scale wind turbine operating under imposed yaw offsets common for wake steering and wind plant control strategies. Active plant control utilizing wake deflection control strategies have been shown experimentally and computationally to reliably produce 1-2% of additional annual energy production (AEP) without significant changes in turbine structural loads, the potential impact on aeroacoustic emissions has yet to be quantified or completely understood. Yawed operation of a wind turbine changes the three-dimensional aerodynamic interaction between the rotor blades and the incoming atmospheric flow, leading to changes in noise generation. This work quantifies the extent to which active control induces additional aeroacoustic emissions from additional separation and other flow interaction dynamic effects. Given public concerns about wind turbine noise and the need for observational data required for regulators to establish noise restrictions, we must understand potential acoustic emissions resulting from active control prior to commercial deployment and the development of practical noise reduction methods and technologies. The work outlined in this report details the new aeroacoustic measurement capability developed at NREL and its application to making full-field observations of noise from a utility-scale wind turbine. Preliminary noise modeling with the aeroacoustics module in OpenFAST helped to establish the design of the experiment, specifically targeting the noise observed at observers distributed around the DOE-owned GE 1.5 MW wind turbine. Low-frequency and infrasound measurement capability implemented in this project establish an operational baseline for the wind turbine, setting the stage for future control, rotor blade, and turbine design research.

17 WIND ENERGY↗

Space radiation effects on dimensional stability of composites

The long-term space environment at GEO, consisting of high doses (less than 10 to the 9th rads) of electron radiation and large cyclic (-157 C to +121 C) temperature changes, can significantly affect the dimensional stability of polymer matrix composites. Radiation alters the chemical structure of epoxies by both chain scission and cross-linking. In this paper, an attempt is made to summarize and examine the effects of electron radiation damage on dimensional stability of composites. Microcracking measurements were made for standard 177 C cure Gr/Ep, rubber toughened Gr/Ep, Gr/Polymide, and GR/Thermoplastic composites. Results show that radiation damage can significantly change matrix-dependent mechanical and physical properties of composites, with data explaining how these changes can affect their dimensional stability.

Tenney, Darrel R.↗

Calibration of cohesive parameters for fracture test simulations of sub-sized bend specimens of AM steels

In this work, crack extensions in sub-sized side-grooved bend specimens of AM steels are examined with changing cohesive parameters. Two-dimensional FE analyses are first conducted to simulate crack extensions by nodal release. The simulation results indicate the near-tip maximum opening stress and separation work rate increase and then slightly decrease for the bend specimens. The hydrogen-charged bend specimens have lower near-tip maximum opening stresses and average separation work rates than those of the uncharged bend specimens. The changing near-tip maximum opening stresses and the separation work rates with increasing crack extension are determined as references for the changing cohesive strengths and energies, respectively. Two-dimensional FE analyses with different changing cohesive parameters are then performed. The simulation results with calibrated cohesive parameters can match well with the test results. The hydrogen-charged specimens have the lower changing cohesive strength vs crack growth curves compared with those of the uncharged specimens. The hydrogen-charged specimens have either lower or similar changing cohesive energy vs crack growth curves compared with those of the uncharged specimens. Finally, a three-dimensional FE analysis is conducted to simulate crack extension by nodal release in one bend specimen to examine the stress triaxialities in front of the growing crack fronts at different locations from the center plane to the planes near the side groove front with increasing crack extension to identify possible physical reasons for the changing cohesive parameters.

36 MATERIALS SCIENCE↗

Tuning of oscillation modes by controlling dimensionality of spin structures

Abstract Harmonic oscillation of spin structures is a physical phenomenon that offers great potential for applications in nanotechnologies such as nano-oscillators and bio-inspired computing. The effective tuning of oscillations over wide frequency ranges within a single ferromagnetic nanoelement is a prerequisite to realize oscillation-based nanodevices, but it has not been addressed experimentally or theoretically. Here, utilizing a vortex core structure, one of spin structures, we report a drastic change of oscillation modes over the frequency range from MHz to sub-GHz in a 100 nm-thick permalloy circular disk. Oscillation mode was found to considerably depend on the shape and dimension of the vortex core structure and various oscillation modes over a wide range of frequencies appeared with dimensional change in the vortex core structure. This work demonstrates that oscillation modes of the vortex core structure can be effectively tuned and opens a way to apply spin structures to oscillation-based technology.

36 MATERIALS SCIENCE↗

Photo-induced halide redistribution in 2D halide perovskite lateral heterostructures

An improved understanding of the degradation pathways under external stimuli is needed to address stability challenges in two-dimensional (2D) perovskite semiconductor materials. Here, in this study, in situ synchrotron nanoprobe X-ray fluorescence (nano-XRF) is used to investigate the evolution of halide redistribution within various 2D halide perovskite (n = 1–3) lateral heterostructures under ultraviolet (UV) exposure. Further, the results show that iodine (I) experiences a loss in all cases, with the rate of change following the perovskite dimensionality monotonically. In contrast, bromine (Br) is relatively more stable than I in n = 2 and 3 heterostructures, with no significant change in the total Br concentration but a visible amount of Br diffusion to the previously I-rich regime. Combining nano-XRF and X-ray absorption spectroscopy (XAS), we found a reduction of dimensionality in crystals with n > 1 after UV exposure, indicating significant structural reconfiguration beyond ion migration.

2D halide perovskites↗

Statistical analysis of stratospheric temperature and ozone profile data for trends and model comparison

Work performed during the project period July 1, 1990 to June 30, 1992 on the statistical analysis of stratospheric temperature data, rawinsonde temperature data, and ozone profile data for the detection of trends is described. Our principal topics of research are trend analysis of NOAA stratospheric temperature data over the period 1978-1989; trend analysis of rawinsonde temperature data for the period 1964-1988; trend analysis of Umkehr ozone profile data for the period 1977-1991; and comparison of observed ozone and temperature trends in the lower stratosphere. Analysis of NOAA stratospheric temperature data indicates the existence of large negative trends at 0.4 mb level, with magnitudes increasing with latitudes away from the equator. Trend analysis of rawinsonde temperature data over 184 stations shows significant positive trends about 0.2 C per decade at surface to 500 mb range, decreasing to negative trends about -0.3 C at 100 to 50 mb range, and increasing slightly at 30 mb level. There is little evidence of seasonal variation in trends. Analysis of Umkehr ozone data for 12 northern hemispheric stations shows significant negative trends about -.5 percent per year in Umkehr layers 7-9 and layer 3, but somewhat less negative trends in layers 4-6. There is no pronounced seasonal variation in trends, especially in layers 4-9. A comparison was made of empirical temperature trends from rawinsonde data in the lower stratosphere with temperature changes determined from a one-dimensional radiative transfer calculation that prescribed a given ozone change over the altitude region, surface to 50 km, obtained from trend analysis of ozonsonde and Umkehr profile data. The empirical and calculated temperature trends are found in substantive agreement in profile shape and magnitude.

Tiao, G. C.↗