Formation of secondary mineral coatings and the persistence of reduced metal-bearing phases in soils developing on historic coal mine spoil
Abstract not provided
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
SEARCH · Engineering Papers
Results for “Soiling”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Effect of bacterial cell addition on Fe(III) reduction and soil organic matter transformation in a farmland soil
The coupled biogeochemical processes of Fe(III) reduction and organic matter transformation profoundly impact terrestrial carbon cycling. However, little is known about the microbial role in soil organic matter (SOM) transformation during Fe(III) bio-reduction. Here we investigated the bio-reduction behavior of a black farmland soil and corresponding SOM transformation under circumneutral and anoxic conditions. A model dissimilatory Fe reducing bacterium, Geobacter sulfurreducens, was added in either live or dead form in order to enhance Fe(III) reduction in soil and to evaluate the accompanying transformation of SOM. The progress of Fe reduction was monitored and SOM transformation was characterized by various spectroscopy methods. Results showed that addition of either dead or live G. sulfurreducens cells increased the Fe(III) reduction rate and extent. Without cell addition, SOM transformation was insignificant within 13 days of incubation, only with some consumption of aliphatic/protein compounds, apparently due to their higher bio-degradability. Addition of dead or live cells resulted in more drastic SOM transformation, but through different mechanisms. With dead cell amendment, cell necromass and debris stimulated the activity of indigenous soil microbes by serving as extra carbon/energy sources. During Fe(III) reduction, the aliphatic/protein compounds were preferentially consumed by indigenous microbial communities, similar to the treatment without cell addition but with a greater extent of consumption. In comparison, addition of live G. sulfurreducens cells stimulated degradation of less bioavailable compounds, including more saturated and higher molecular weight SOM. It is possible that fast depletion of labile SOM by live G. sulfurreducens cells favored utilization of less bioavailable molecules (such as those with more aromatic structures) by the originally dormant species in native microbial community, suggesting an active role of live Fe(III)-reducing bacteria in affecting SOM transformation. In addition, fast assimilation of microbial related carbon, such as aromatic proteins and microbial byproducts, into SOM pools was also observed. Overall, our results suggest that addition of Fe(III)-reducing bacteria to a native soil can enhance Fe(III) reduction and accelerate the turnover of SOM through various mechanisms. The study provides new insights into coupled Fe(III) reduction and SOM transformation, as well as the “priming effect” of SOM using microbial cells as substrate.
54 ENVIRONMENTAL SCIENCES↗
A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
Plasmids play significant roles in microbial adaptation to ecosystems, yet their dynamics remain poorly understood due to identification challenges. We present the Global Soil Plasmidome Resource (GSPR), a comprehensive dataset of 98,728 plasmid sequences amassed from 6860 terrestrial microbial communities and isolates. We explore this resource through various computational approaches, including phylogenetic diversity analysis, host prediction, and extensive functional annotation, to understand the contribution of plasmids to the genetic and functional diversity in soil, correlating these findings with sample type, as well as the soil habitat they were retrieved from. Our analysis reveals insights into plasmid-encoded functions such as effector modules, quorum sensing, and stress resistance, which may contribute to their persistence and microbial adaptation in soil. Furthermore, CRISPR analysis suggests a prevalent role of these elements related to intra-plasmid competition. By contrasting plasmids from cultivated and uncultivated organisms, we identify important functions that expand existing knowledge of plasmid roles in these habitats. This study represents a notable step forward in elucidating plasmid diversity and function within soil microbiomes and establishes a foundational framework for exploring their roles in natural environments.
Fiamenghi, Mateus B↗
Impact of bromide exposure on natural organochlorine loss from coastal wetland soils in the Winyah Bay, South Carolina
Explore the source record for details and available documents.
99 GENERAL AND MISCELLANEOUS↗
Effect of Soil Properties and Input Motion on Site Amplification Using Validated Nonlinear Soil Model
Here, three-dimensional (3-D) nonlinear site response analyses are conducted using finite element models of actual soil profiles from ten nuclear power plant (NPP) sites in the United States to investigate the effects of soil properties and input motions on site amplification. The modeling approach developed in this study combines several novel elements, such as 3-D analysis (including vertical motions), nonlinear inelastic behavior of soil (strain-dependent shear modulus reduction and hysteretic damping), formulation of nonreflecting boundary conditions at the base, and generation of realistic outcrop ground motions for specific sites. All these elements of the modeling approach are first validated using actual data from five earthquakes at three downhole array stations recorded in the Kiban-Kyoshin network (KiK-net), Japan. The same approach is then used to develop site models of ten NPP sites in the United States and corresponding ground motions that are spectrally matched to the site hazard spectra. Eight sets of three-component input motions are used in the study and are categorized on the basis of presence or absence of a near-field pulse in the seed ground motions used for spectral matching. It is found that all sites retain a definite site amplification function regardless of the input motion, provided that the seed motion is spectrally matched to the site hazard spectra. The magnitude of site amplification and frequencies at which they occur depend upon soil properties, particularly the shear wave velocity profile and the constitutive relationship (strain-dependent shear modulus reduction and hysteretic damping) of soil. Amplification of spectral acceleration in the vertical direction (up-down motion) is found to be just as much as, if not more than, the amplification in the horizontal direction. Peak shear strain is found to be about 20% larger for near-field motions compared to far-field motions whereas maximum horizontal site amplification for far-field motions is found to be consistently larger than that of near-field motions, even though the differences between the two remain within the scatter resulting from individual ground motions.
99 GENERAL AND MISCELLANEOUS↗
Lawrence Livermore National Laboratory Experimental Test Site, Site 300: Soil Study Institutional Review Board #1081 Soil Sampling and Analysis Plan
This Soil Sampling and Analysis Plan (SAP) was prepared by the Environmental Functional Area/Technical Services Department (TSD) of the Environment, Safety & Health (ES&H) Directorate for the Project Management Office (PMO) to collect soil quality data at an area located at Lawrence Livermore National Laboratory’s (LLNL’s) Experimental Test Site, Site 300 (Site 300) (project) (Figures 1 and 2). The purpose of the project is to determine the chemical and radiological quality of soil in the project area to support feasibility and design of future improvements. This SAP identifies chemicals of concern and describes the procedures for collection and analysis of environmental samples, and evaluation of analytical data (chemical and radiological) to determine the reuse potential of shallow soil at the project area. This SAP follows the criteria established in LLNL’s Soils Screening and Management Plan (SSMP) (LLNL 2022), which is consistent with U.S. Environmental Protection Agency (EPA) guidance for developing Data Quality Objectives for environmental data (EPA 2006) and the Multi-Agency Radiation Survey and Site Investigation Manual (MARSSIM) guidance (U.S. NRC, U.S. EPA, U.S. DOE, U.S. DOD 2000). The scope of this SAP is based on preliminary design information provided by PMO.
54 ENVIRONMENTAL SCIENCES↗
Transparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganisms
Microscale processes are critically important to soil ecology and biogeochemistry yet are difficult to study due to soil’s opacity and complexity. To advance the study of soil processes, we constructed transparent soil microcosms that enable the visualization of microbes via fluorescence microscopy and the non-destructive measurement of microbial activity and carbon uptake in situ via Raman microspectroscopy. We assessed the polymer Nafion and the crystal cryolite as optically transparent soil substrates. We demonstrated that both substrates enable the growth, maintenance, and visualization of microbial cells in three dimensions over time, and are compatible with stable isotope probing using Raman. We applied this system to ascertain that after a dry-down/rewetting cycle, bacteria on and near dead fungal hyphae were more metabolically active than those far from hyphae. These data underscore the impact fungi have facilitating bacterial survival in fluctuating conditions and how these microcosms can yield insights into microscale microbial activities.
59 BASIC BIOLOGICAL SCIENCES↗
Performance of the Boeing LRV wheels in a lunar soil simulant. Report 2: Effects of speed, Wheel load, and soil
Two nearly identical Boeing-GM wire-mesh Lunar Roving Vehicle (LRV) wheels were laboratory tested in a lunar soil simulant to determine the influence of wheel speed and acceleration, wheel load, presence of a fender, travel direction, and soil strength on the wheel performance. Constant-slip and three types of programmed-slip tests were conducted with a single-wheel dynamometer system. Test results indicated that performance of single LRV wheels in terms of pull coefficient, power number, and efficiency were not influenced by wheel speed and acceleration, travel direction, the presence of a fender, or wheel load. Of these variables, only load influenced sinkage, which increased with increasing load. For a given slip, the pull coefficient and power number increased with increasing soil strength. However, for a given pull coefficient or slope, slip was less in firmer soil; thus, the power number decreased and efficiency increased with increasing soil strength.
Melzer, K.↗
Chemical composition of Luna 20 rocks and soil and Apollo 16 soils.
Review of the abundances of 24 major, minor, and trace elements measured by instrumental neutron activation analysis in Luna 20 metaigneous rocks, breccia, and soil, and in Apollo 16 soils. The similarities and differences observed are discussed. The bulk compositions of Luna 20 and Apollo 16 rocks and soils show close similarity between the two highland sites. Interelement correlations observed previously for maria are also found in highland samples. Luna 20 and Apollo 16 soils are low in alkalis. Both soils show an apparent Cd-Zn rich component similar to that observed at the mare sites and high Tl abundances relative to mare sites.
Laul, J. C.↗
Evaluation of gravimetric ground truth soil moisture data collected for the agricultural soil moisture experiment, 1978 Colby, Kansas, aircraft mission
Soil moisture data acquired to support the development of algorithms for estimating surface soil moisture from remotely sensed backscattering of microwaves from ground surfaces are presented. Aspects of field uniformity and variability of gravimetric soil moisture measurements are discussed. Moisture distribution patterns are illustrated by frequency distributions and contour plots. Standard deviations and coefficients of variation relative to degree of wetness and agronomic features of the fields are examined. Influence of sampling depth on observed moisture content an variability are indicated. For the various sets of measurements, soil moisture values that appear as outliers are flagged. The distribution and legal descriptions of the test fields are included along with examinations of soil types, agronomic features, and sampling plan. Bulk density data for experimental fields are appended, should analyses involving volumetric moisture content be of interest to the users of data in this report.
Arya, L. M.↗
Documentation for Program SOILSIM: A computer program for the simulation of heat and moisture flow in soils and between soils, canopy and atmosphere
SOILSIM, a digital model of energy and moisture fluxes in the soil and above the soil surface, is presented. It simulates the time evolution of soil temperature and moisture, temperature of the soil surface and plant canopy the above surface, and the fluxes of sensible and latent heat into the atmosphere in response to surface weather conditions. The model is driven by simple weather observations including wind speed, air temperature, air humidity, and incident radiation. The model intended to be useful in conjunction with remotely sensed information of the land surface state, such as surface brightness temperature and soil moisture, for computing wide area evapotranspiration.
Field, Richard T.↗
Consistency Between NASS Surveyed Soil Moisture Conditions and SMAP Soil Moisture Observations
The USDA National Agricultural Statistics Survey (NASS) collects and publishes crop growth status and soil moisture conditions in major US agricultural regions. The operationally-produced weekly reports are based on survey information. The surveys are based on visual assessments and ? in the case of soil moisture ? report soil moisture levels in one of four categories (Very Short, Short, Adequate and Surplus). In this study, we show that these reports have remarkable correspondence with the NASA Soil Moisture Active Passive (SMAP) Level-4 Soil Moisture (L4SM) product. This consistency allows the combining the two distinct types of data to produce a value-added combination, which is mapped fields rather than State-by-State tables and it is refreshed daily rather than weekly. In this study classification thresholds are derived for L4SM by mapping cumulative distribution functions of L4SM surface and root-zone SM to the categorical NASS SM conditions. The results show that, year-over-year, the SMAP cumulative SM distributions are consistent with the NASS SM conditions and, furthermore, that the temporal evolution of the SMAP-derived thresholds is consistent with the seasonal crop growth cycles from year to year. The results signify that the SMAP SM retrievals are relatable to SM estimation conducted in agriculture by land managers and farmers, which underlines the general applicability of the SMAP data.
Andreas Colliander↗
Assessing the Impact of Soil Layer Depth Specification on the Observability of Modeled Soil Moisture and Brightness Temperature
The utility of hydrologic land surface models (LSMs) can be enhanced by using information from observational platforms, but mismatches between the two are common.This study assesses the degree to which model agreement with observations (observability) is affected by two mechanisms in particular: 1) physical incongruities between the support volumes being characterized and 2) inadequateor inconsistent parameterizations of physical processes. The Noah and Noah-MP LSMs by default characterize surface soil moisture (SSM) in the top 10 cm of the soil column. This depth may be reasonable when comparing against soil moisture from in situ probes centered at 5 cm,but it is notably different from the 5 cm (or less) sensing depth of NASA’s Soil Moisture Active Passive (SMAP) satellite mission. These depth inconsistencies are examined by using thinner model layers in the Noah and Noah-MP LSMs and comparing resultant simulations to in situ and SMAP soil moisture. In addition, a forward radiative transfer model to simulate microwave brightness temperatures (Tbs) is used to facilitate direct comparisons of LSM-based and SMAP-based L-band Tb retrievals. Observability is quantified using Kolmogorov-Smirnov distance values, calculated from empirical cumulative distribution functions of SSM and Tb time series. Experiment results depend on the particular subspace being analyzed (SSM or Tb). This study concludes that therole of increasedsoil layer discretizationon LSM observability is secondary to the influence of component parameterizations, the effects of which dominate systematic differences with observations
SMAP↗
Reduced accrual of mineral-associated organic matter after two years of enhanced rock weathering in cropland soils, though no net losses of soil organic carbon
Abstract Enhanced rock weathering (ERW), the application of crushed silicate rock to soil, can remove atmospheric carbon dioxide by converting it to (bi) carbonate ions or solid carbonate minerals. However, few studies have empirically evaluated ERW in field settings. A critical question remains as to whether additions of crushed rock might positively or negatively affect soil organic matter (SOM)—Earth’s largest terrestrial organic carbon (C) pool and a massive reservoir of organic nitrogen (N). Here, in three irrigated cropland field trials in California, USA, we investigated the effect of crushed meta-basalt rock additions on different pools of soil organic carbon and nitrogen (i.e., mineral-associated organic matter, MAOM, and particulate organic matter, POM), active microbial biomass, and microbial community composition. After 2 years of crushed rock additions, MAOM stocks were lower in the upper surface soil (0–10 cm) of plots with crushed rock compared to unamended control plots. At the 2 sites where baseline pre-treatment data were available, neither total SOC nor SON decreased over the 2 years of study in plots with crushed rock or unamended control plots. However, the accrual rate of MAOM-C and MAOM-N at 0–10 cm was lower in plots with crushed rock vs. unamended controls. Before ERW is deployed at large scales, our results suggest that field trials should assess the effects of crushed rock on SOM pools, especially over multi-year time scales and in different environmental contexts, to accurately assess changes in net C and understand the mechanisms driving interactions between ERW and SOM cycling.
58 GEOSCIENCES↗
Association between soil organic carbon and calcium in acidic grassland soils from Point Reyes National Seashore, CA
All data is collected from across 3 soil cores spanning a pH gradient at Point Reyes National Seashore, as part of a recent publication. The bulk data csv includes hygroscopic moisture content, soil pH, total C and N values, particle size distributions, cation exchange capacity and extractable cations. The STXM data package includes raw spectra data from scanning transmission X-ray microscopy C near-edge X-ray absorption fine structure spectroscopy analysis, extracted from STXM Image Reader analysis and then subsequently normalised in Athena (see details in paper). The data file also contains a bulk chemistry and mineralogy dataset, including total and trace element contents from 3 depths and mineral compositions as measured at BL 11-3 SSRL and semi-quantified in HighScore. Finally the final data file is calcium K-edge X-ray absorption near-edge structure spectroscopy (BL 4-3) and micro-XANES and micro-X-ray fluorescence (BL 14-3b) data.
54 ENVIRONMENTAL SCIENCES↗
Cereal root exudates contain highly structurally complex polysaccharides with soil-binding properties
Not provided.
Plant Sciences↗
From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology
Abstract Soil microbiomes are heterogeneous, complex microbial communities. Metagenomic analysis is generating vast amounts of data, creating immense challenges in sequence assembly and analysis. Although advances in technology have resulted in the ability to easily collect large amounts of sequence data, soil samples containing thousands of unique taxa are often poorly characterized. These challenges reduce the usefulness of genome-resolved metagenomic (GRM) analysis seen in other fields of microbiology, such as the creation of high quality metagenomic assembled genomes and the adoption of genome scale modeling approaches. The absence of these resources restricts the scale of future research, limiting hypothesis generation and the predictive modeling of microbial communities. Creating publicly available databases of soil MAGs, similar to databases produced for other microbiomes, has the potential to transform scientific insights about soil microbiomes without requiring the computational resources and domain expertise for assembly and binning.
59 BASIC BIOLOGICAL SCIENCES↗
SPRUCE Soil Volumetric Water Content in Experimental Plots, Marcell Experimental Forest, Minnesota, 2017-2025
This dataset contains soil volumetric water content (VWC) measurements from the Spruce and Peatland Responses Under Changing Environments (SPRUCE) Experiment. Measurements were made inside SPRUCE experimental plots in the S1 Bog at the US Forest Service Marcell Experimental Forest in northern Minnesota, USA from 2018-2025 (2018-06-14 to 2025-12-31). Observations were made with METER 10HS soil moisture sensors. To reduce bulk density related variability, 10HS sensors were placed inside mesh tubes filled with peat at a standard bulk density. The observations under standard bulk density represent relative differences in water content between hummock and hollow positions, and in response to experimental treatments. Productivity of peatlands, and their keystone species sphagnum, are highly dependent on water availability, which is affected by lateral inputs, precipitation, ground water depth and evapotranspiration. Knowledge of near surface and sphagnum water content is useful to understand peatland function. This dataset contains 8 data files in comma-separate values (.csv) format. Additional metadata are provided: one data dictionary and a file-level metadata file in comma-separate values (*.csv) format and a user guide in PDF (*.pdf) format.
Warren, Jeffrey [ORNL] (ORCID:0000000206804697)↗