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DOE OSTI2022

Wet-chemical synthesis of Li7P3S11 with tailored particle size for solid state electrolytes

The small-size solid-state electrodes (SSEs) with high Li+ conductivity play an important role in reducing the interfacial resistance between electrode materials and SSEs and defects between SSEs. As one of the most conductive sulfide based ionic conductors, scalable synthesis of Li7P3S11 with controllable particle sizes is highly desired but rarely reported. Here, we report a facile wet-chemical synthesis method to prepare Li7P3S11 SSEs with variable sizes for all-solid-state lithium batteries (ASSLBs). By fully dissolving 70Li2S-30P2S5 precursors in ethyl acetate solution, the particle size of Li7P3S11 can be manipulated into as small as ~110 nm and high Li+ conductivity of 1.05 mS cm-1 can be achieved. A systematical mechanistic study of solvent effects suggests that the controlled particle sizes are attributed to the excellent solvability and low binding energy of ethyl acetate solvent toward solutes. Moreover, this generic method can be extended to the facilely synthesis of Li3PS4 nanoparticles with an average size of ~200 nm and high Li+ conductivity of 0.1 mS cm-1.

Zhou, Jianbin↗

DOE OSTI2023

High-temperature chromium diffusion in austenitic stainless steel: Ab initio molecular dynamics simulations

Chromium self-diffusion through stainless steel (SS) matrix and along grain boundaries is an important mechanism controlling SS structural materials corrosion. For this work, Cr diffusion in austenitic SS was simulated using canonical ab initio molecular dynamics with realistic models of type-316 SS bulk, with and without Cr vacancies, and a low-energy Σ3 twin boundary typically observed at active corrosion sites. Cr self-diffusion coefficients at 750 and 850 °C calculated using Einstein’s diffusion equation are 4.2 × 10 –6 and 8.1 × 10 –6 Å 2 ps –1 in pristine bulk, 3.8 × 10 –3 and 5.5 × 10 –3 Å 2 ps –1 in bulk including Cr vacancies, and 9.5 × 10 –2 and 1.0 × 10 –1 Å 2 ps –1 at a Σ3[1 1 1]60° twin boundary.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Safety perceptions of solid-state lithium metal batteries

Safety concerns hamper the wide application of lithium-ion batteries (LIBs) in the fields of electric vehicles and stationary energy storage. As the blame of the battery thermal runway was widely cast on the flowable, volatile, and flammable nature of liquid organic electrolytes, solid-state lithium batteries with solid and nonflammable electrolytes are highly praised for potentially better safety characteristics. Furthermore, solid-state lithium metal batteries (SS-LMBs) may become an ultimate solution for safe, high-energy density batteries. Whether SS-LMBs are safe enough to meet emerging demands remains unclear, as recent publications have presented serious safety concerns at both the material and device levels. In conclusion, this review summarizes recent investigations into SS-LMB safety, and systematic analysis and discussion are provided in this discussion of the safety concerns of SS-LMBs.

25 ENERGY STORAGE↗

DOE OSTI2025

Investigation of MO x (M = Cr, Mn, Re, and Mo) coated stainless-steel electrodes for oxygen evolution reaction in natural seawater electrolysis

Seawater electrolysis is considered a potential strategy for large-scale of affordable H 2 production. However, poor durability of the anode for oxygen evolution reaction (OER) in natural seawater is a remaining concern due to chloride-induced reaction. Herein, the effect of various MO x (M = Mn, Cr, Re, and Mo) coated stainless steel (SS) electrodes on OER in direct natural seawater electrolysis was comprehensively studied. It is found that the Mo-coated SS electrode is superior to all others in terms of durability, followed by Re-coated SS, while the Cr and Mn-coated SS electrodes show the poorest durability. Additionally, the durability and activity of the Mo/SS electrode can be boosted remarkably in 1 M KOH/seawater compared to the natural seawater, resulting in an overpotential at 10 mA cm −2 decrease from 830 to 399 mV. Meanwhile, no degradation is observed at 1000 mA cm −2 for 100 h in 1 M KOH seawater, which is among the best stability, based on the literature review. Moreover, the improved durability and activity with Mo coating were extended to the Inconel 718 substrate, and around 40 % improvement in durability and 25 mV overpotential decrease at 10 mA cm −2 are observed, which indicates that Mo coating can be considered as a universal approach to improve the anode durability and activity. The improved performance with Mo coating may be attributed to the continuous Mo oxide layer formation or in situ generated MoO 4 2− in the OER process. In conclusion, this work provides a holistic strategy to enhance the anode durability and activity under harsh conditions, offering valuable insights for designing corrosion-resistant electrodes in direct seawater electrolysis.

Direct seawater electrolysis↗

DOE OSTI2021

Effect of heat treatment on creep behavior of 316 L stainless steel manufactured by laser powder bed fusion

The objective of this study is to understand the thermal stability of microstructure and its effect on the creep behavior of additively-manufactured 316L stainless steel (AM 316L SS). Creep specimens were fabricated from rods printed by a laser powder bed fusion process. Six different heat treatments, namely 650 °C/1 h, 700 °C/1 h, 750 °C/1 h, 800 °C/1 h, 900 °C/1 h and 1050 °C/1 h were applied to the creep specimens. The heat-treated specimens were creep-tested under the same condition, 550 °C/275 MPa to evaluate the effect of post-build heat treatment on the creep behavior of AM 316L SS. In the temperature range of 650-750 °C, dislocation density within cells, and cell size and wall thickness were affected by the heat treatment, while elemental segregation at boundaries remained unchanged and Mn-enriched Si oxide particles remained stable. In the temperature range of 750-900 °C, concurrent changes were observed in dislocation cell structures, elemental segregation and oxide particles. The 1050 °C-heat treatment removed cell structures and boundary solute segregations, leading to formation of equiaxed grains; Mn-enriched Si oxide particles in the as-built specimen were replaced by more stable Mn-enriched Cr oxides. The creep life of AM 316L SS increased after the heat treatment at 650 °C and then decreased with increasing temperature up to 900 °C where cell/subgrain structures still existed. The creep rate and creep elongation followed an opposite trend. The creep rate can be correlated with the structural parameters of cell/subgrain size and cell wall/boundary thickness and can be rationalized by different strengthening mechanisms of dislocation cells and subgrains. The heat treatment affected strongly the primary and secondary creep but had a minimal effect on the tertiary creep of AM 316L SS.

316L stainless steel↗

DOE OSTI2025

Effect of cold forging on the microstructure and corrosion behavior of type 316L stainless steel in molten FLiNaK salt

Here, the effect of cold forging on the microstructure and corrosion behavior of 316L stainless steel (SS) in molten salt was investigated. Static corrosion experiments were performed in FLiNaK (LiF-NaF-KF: 46.5–11.5–42 mol.%) at 600 °C for 50 h in a glove box. The results show that cold forging gives rise to enhanced corrosion of 316L SS in molten fluoride salt due to the increase of crystallographic defects. Based on the potentiodynamic polarization results, the corrosion current density of 50 % cold-forged 316L SS is about 2.1 times larger than that of the as-received 316L SS in molten FLiNaK salt at 600 °C.

316L stainless steel↗

DOE OSTI2020

High-efficiency, air-stable manganese–iron oxide nanoparticle-pigmented solar selective absorber coatings toward concentrating solar power systems operating at 750 °C

Solar selective absorber coating with long-term thermal stability at high temperatures ≥750 °C in air is an important component to reduce the levelized cost of energy (LCOE) of concentrating solar power (CSP) systems toward 50% power efficiency and dispatchable solar electricity. Conventionally, solar spectral selectivity requires multilayer-interference coatings implemented by stringently controlled vacuum deposition, and these coatings degrade significantly at >700 °C in air. Herein, we established a quantitative design approach and demonstrated a proof-of-concept air-stable, manganese–iron oxide nanoparticle (NP)-pigmented solar selective coatings with a high solar absorptance of ~93%, a relatively low thermal emittance of ~52%, and an optical-to-thermal energy conversion efficiency >89% under 1,000× solar concentration at 750 °C toward Generation 3 CSP systems. These coatings demonstrate spectral selectivity using cost-effective spray coating approach, a notable improvement over conventional vacuum-deposited, multilayer solar selective coatings for low-cost, high-efficiency solar thermal receivers. In contrast to the thermal degradation of spectrally non-selective benchmark Pyromark 2500 coatings at 750 °C in air, the solar absorptance of the MnFe 2 O 4 -pigmented coatings on stainless steel 310 (SS 310) substrates is increased to ~92.9% and the optical-to-thermal energy conversion efficiency is improved to 89.7% after serving at 750 °C in air for 700 h. X-ray diffraction results reveal that this improvement is due to the transformation of MnFe 2 O 4 NPs into more thermodynamically stable, non-stoichiometric manganese-rich manganese ferrite and iron-rich manganese–iron oxide phases after 500 h aging at 750 °C. For >1,000 h-endurance testing at 750 °C in air and the subsequent 19 day-night thermal cycling between 750 °C (12 h/cycle) and 25 °C (12 h/cycle) on SS 310 substrates, the thermal degradation is mainly due to the CrO x microflake formation from SS 310 substrates rather than the coatings, which can be suppressed by preoxidizing the surface of SS 310. With lower emittance matrix material and further optimization of pigment NP stoichiometry, concentration, and coating thickness, it is promising to achieve an optimized thermal efficiency ≥92.5% with long-term thermal stability at 750 °C for Generation 3 CSP systems.

14 SOLAR ENERGY↗

DOE OSTI2026

A bioinspired approach for adaptive solid-solid phase change material coatings with optimized surface features for passive thermal regulation

The necessity to reduce global energy consumption calls for innovative strategies in building thermal management. Passive thermal regulation, particularly through bio-inspired designs, offers a promising avenue by mimicking nature's efficient control of optical properties. This research introduces a novel, climate-responsive coating that integrates optimized bio-inspired surface features with a solid-solid phase change material (SS-PCM) to dynamically manage solar absorptivity without adding additional thickness, enabling both heating and cooling as needed. Drawing on the photonic architectures of the Saharan silver ant and Morpho Didius butterfly, we employed a modeling and multi-objective optimization framework to tailor these surface features. Simulations reveal that surface texture, rather than the intrinsic phase transition of the SS PCM, dominates optical control. Relative to a flat SS PCM coating, optimized isotropic random roughness and broader range features yielded the highest passive heating power increase of about 144 % and 319 % respectively suitable for cold climates. Saharan ant-inspired features enhanced passive cooling for hot climates, achieving a 21.8 % improvement. For moderate climates, Butterfly-wing-inspired surface features provided a balanced enhancement of 19 % for heating and 7 % for cooling. Across all cases, the optimized surface features reduced combined heating and cooling energy demand more effectively than the baseline coating, while preserving material thickness. These findings demonstrate that climate-adaptive, optimized bio-inspired surface features can unlock the full potential of SS PCM coatings, providing a versatile pathway to significant energy savings in buildings and other applications. The methodology establishes a framework for designing next-generation adaptive envelopes that leverage natural photonic principles for high-impact, low-cost thermal regulation.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Halide Substitution Effects on Lithium-Ion Diffusion in Protonated Antiperovskites

Solid-state electrolytes (SSEs) for all-solid-state lithium-ion batteries are generating intense interest because these batteries can improve the safety and performance compared with devices fabricated with conventional, flammable liquid electrolytes. In these SSEs, it has been suggested that Li + ion diffusion in the grain boundaries is hindered and is a critical determinant of the overall ionic conductivity (σ). However, Li + ion diffusivities in the grain (D G ) and the grain boundary (D GB ) are difficult to determine experimentally, with few techniques capable of distinguishing the individual contributions. Here, we distinguished the D G and D GB for the protonated lithium antiperovskites (pLiAPs) SSEs: Li 2 OHCl, Li 2 OHBr, Li 2 OHF 0.1 Cl 0.9 , Li 2 OHF 0.1 Br 0.9 , and Li 2 OHCl 0.3 7Br 0.63 . The measurements were obtained directly from 7 Li pulsed-field gradient nuclear magnetic resonance (PFG-NMR) at 353 K. The 7 Li PFG-NMR echo profiles were composed of two primary components with additional secondary oscillatory components – the so-called NMR diffraction phenomenon. The length scale separating the two main components corresponds to a diffusion length of ~1.7 µm, which is thought to be the average grain size (by diameter). The short-range (≤ 1.7 µm) diffusion component associated with D G (≈10 -11 m 2 /s) varied minimally with halide substitution, while the long-range (≥ 1.7 µm) component D GB (≈10 -12 to 10 -15 m 2 /s) was highly sensitive to the substitution of halides and closely correlated with s. In addition, from the comparison of the ratio D GB /D G to D t (the Li + ion diffusion coefficient estimated from the rotational correlation time, t c ), it was determined that the contribution of D G to σ is negligible; 0.01 ~ 0.04 in the pLiAPs studied here. Finally, these insights provide fundamental understanding of the halide substitution effects on Li + ion grain versus grain boundary diffusion, and suggest that careful engineering of the grain boundaries at the microscopic level is necessary to achieve high-performance pLiAP SSEs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2026

Evaluating the Effects of Anode Porous Transport Layer on the Performance and Durability of Anion Exchange Membrane Electrolyzers

As anion exchange membrane systems have emerged as a competitive low temperature electrolysis technology, research has expanded to other components and device integration. In this study, nickel (Ni) and stainless steel (SS)-based porous transport layers (PTLs) are investigated in membrane electrode assemblies (MEAs). Compared to MEAs using Ni, the SS PTL shows higher performance due to less kinetics and residual loss and possibly due to a combination of iron mobility improving oxygen evolution reactivity and electron conduction pathways, as well as higher porosity increasing site access. Voltage decay rates of approximately 144 and 115 μV/h, respectively, for the Ni and SS PTLs are found, although the long-term durability and lifetime implications are convoluted. Voltage breakdown analysis confirms that both PTLs saw significant increases in residual loss possibly due to catalyst/PTL property changes that affected electronic, ionic, and mass transport pathways. For the Ni PTL, a higher proportion of the losses were due to cell kinetics; comparatively, more of the SS PTL losses were due to increases in the high frequency resistance. The experimental findings presented here provide insights on the impact of the PTL materials and their properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2021

Non-structural carbohydrates mediate seasonal water stress across Amazon forests

Non-structural carbohydrates (NSC) are major substrates for plant metabolism and have been implicated in mediating drought-induced tree mortality. Despite their significance, NSC dynamics in tropical forests remain little studied. We present leaf and branch NSC data for 82 Amazon canopy tree species in six sites spanning a broad precipitation gradient. During the wet season, total NSC (NSC T ) concentrations in both organs were remarkably similar across communities. However, NSC T and its soluble sugar (SS) and starch components varied much more across sites during the dry season. Notably, the proportion of leaf NSC T in the form of SS (SS:NSC T ) increased greatly in the dry season in almost all species in the driest sites, implying an important role of SS in mediating water stress in these sites. This adjustment of leaf NSC balance was not observed in tree species less-adapted to water deficit, even under exceptionally dry conditions. Thus, leaf carbon metabolism may help to explain floristic sorting across water availability gradients in Amazonia and enable better prediction of forest responses to future climate change.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Giant spin-selective bandgap renormalization in CsPbBr 3 colloidal nanocrystals

The spin-dependence of the strongly correlated phenomena and many-body interactions play an important role in quantum information science. In particular, it is quite interesting but unclear how the spin degree of freedom ramifies the bandgap renormalization, one of the fundamental many-body phenomena. We report the first room-temperature observation of giant spin-selective bandgap renormalization (SS-BGR) in CsPbBr 3 colloidal nanocrystals using time-resolved circularly polarized femtosecond pump-probe spectroscopy. The SS-BGR results from many-body interactions among carriers with the same spin that renormalize their joint density of states by 57+/- 1 meV, visualized here as photoinduced absorption (PIA) below band-edge transition energy when the pump and probe are co-polarized. The hallmark result of spectrally resolved SS-BGR is in stark contrast to the usually submerged signal in II-VI and III-V semiconductors and is 3 orders of magnitude larger than that observed in Ge/SiGe quantum wells, highlighting the unique and beneficial band structure of the metal-halide semiconductors. We propose that the PIA, due to SS-BGR, can be used to describe the spin-polarization and spin-relaxation dynamics. The experimental and theoretical findings open up new possibilities for optical manipulation of spin degrees of freedom and their many-body interactions in metal-halide perovskite nanocrystals for potential room-temperature applications.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2023

Measurement of the production of a $W$ boson in association with a charmed hadron in $pp$ collisions at $\sqrt{s}$ = $\mathrm{13 TeV}$ with the ATLAS detector

The production of a $W$ boson in association with a single charm quark is studied using 140 fb –1 of $\sqrt{s}$ = $13$ $\mathrm{TeV}$ proton-proton collision data collected with the ATLAS detector at the Large Hadron Collider. The charm quark is tagged by the presence of a charmed hadron reconstructed with a secondary-vertex fit. The $W$ boson is reconstructed from the decay to either an electron or a muon and the missing transverse momentum present in the event. The charmed mesons reconstructed are D + → K – π + π + and D *+ → D 0 π + → (K – π + ) π + and the charge conjugate decays in the fiducial regions where $p$ T ($e,μ$) > 30 GeV, |$η(e,μ)$| < 2.5, $p$ T (D (*) ) > 8 GeV, and |$η$(D (*) )| < 2.2. The integrated and normalized differential cross sections as a function of the pseudorapidity of the lepton from the $W$ boson decay, and of the transverse momentum of the charmed hadron, are extracted from the data using a profile likelihood fit. The measured total fiducial cross sections are ${σ}_{fid}^{OS – SS}$ (W – + D + ) = 50.2 ± 0.2 ${(stat)}_{–2.3}^{+2.4}$(syst) pb, ${σ}_{fid}^{OS – SS}$ (W + + D – ) = 48.5 ± 0.2 ${(stat)}_{–2.2}^{+2.3}$(syst) pb, ${σ}_{fid}^{OS – SS}$ (W – + D *+ ) = 51.1 ± 0.4 ${(stat)}_{–1.8}^{+1.9}$(syst) pb, ${σ}_{fid}^{OS – SS}$ (W + + D *– ) = 50.0 ± 0.4 ${(stat)}_{–1.8}^{+1.9}$(syst) pb. Results are compared with the predictions of next-to-leading-order quantum chromodynamics calculations performed using state-of-the-art parton distribution functions. Additionally, the ratio of charm to anticharm production cross sections is studied to probe the $s$-$\bar{s}$ quark asymmetry. The ratio is found to be ${R}_{c}^{±}$= 0.971 ± 0.006 (stat) ± 0.011 (syst). The ratio and cross-section measurements are consistent with the predictions obtained with parton distribution function sets that have a symmetric $s$-$\bar{s}$ sea, indicating that any $s$-$\bar{s}$ asymmetry in the Bjorken-x region relevant for this measurement is small.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Mutually promoting or constraining? Disentangling the superimposed effect of velocity and illuminance on fish motion in low-velocity flows with a novel metric

Global climate change, species invasion, and human activities such as the construction of hydraulic facilities are contributing to the worldwide degradation of fish stocks. As a pivotal environmental factor that affects fish migration and population distribution, low-velocity flow has not drawn enough attention despite its extensive presence in various ecoregions. Herein, to understand the behavioural profiles of fish in low-velocity flow, we examined the motility and swimming performance of two representative cyprinids, grass carp (GC, Ctenopharyngodon idella) and silver carp (SC, Hypophthalmichthys molitrix), under the combined effect of different flow velocities and illuminance ranges. The two species were exposed to two flow velocities (0.15 and 0.25 m/s) and three illuminance ranges (100.0 – 0.9 lx, 300.0 – 2.5 lx, and 700.0 – 4.9 lx). A novel behavioural metric, composed of light preference, cruising swimming speed, rheotaxis index (RI), swimming stability (SS), and the probability of moving forwards/backwards over a certain distance (PM f -0.1 and PM b -0.1), was developed to depict the motion strategy of fish fully. By investigating the individual distribution of the fish in light gradient, we confirmed the scototaxis of GC and found the oscillating light preference in SC that changed from 84.4 – 10.2 lx to 6.0 – 2.1 lx and disappeared with increasing illuminance. At the given velocities, the RI and SS increased in both species with a faster flow, and SC was more forward-prone and stable than GC. Despite its fluctuating light preference, the higher illuminances heightened the RI and SS in SC; while in GC, higher illuminances inhibited the SS and had no impact on the RI. The results of PM f -0.1 and PM b -0.1 indicated that a higher flow velocity could facilitate temporary upstream swimming in both species, while illuminance could promote the same effect in SC only. Finally, our study proposed possible moving manoeuvres in fine-scale spatio-temporal scenarios such as attraction flow and untraditional passages and provides valuable insights into fish community dynamics, laying the groundwork for alleviating the threat from invasive species and for future fish population recovery.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Novel Functional Thermal Energy Storage Materials for Buildings Applications

The leakage of solid-liquid phase change materials (PCMs) tremendously limits their long-term application in thermal energy storage (TES). In this work, we present durable and form-stable shape-stabilized PCMs (ss-PCMs) for TES in building envelopes. These ss-PCMs are fabricated by encapsulating polyethylene glycol (PEG) consisting of different molecular weights within mesoporous magnesium oxide and silica dioxide. For the first time, the phase transition temperature (Tt) of ss-PCMs has been fine-tuned synthetically to be comfortable to building occupants by utilizing PEG blends with molecular weights of 600 and 800 g/mol. Several parameters, including surface hydrophilicity/hydrophobicity, surface area, and PCM loading percentage, have been studied to maximize the latent heat enthalpy for high energy efficiency and maintain form stability. The best ss-PCM candidate with suitable Tt and appreciable latent heat enthalpy exhibits a repeatable phase change behavior for up to 1,000 thermal cycles without leakage, which provides a promising solution for durable TES in buildings. The Tt tunability extends its application over a wider temperature range beyond buildings.

building envelope↗

DOE OSTI2022

Review—Electrospun Inorganic Solid-State Electrolyte Fibers for Battery Applications

Inorganic solid-state electrolytes (SSEs), especially Li 7 La 3 Zr 2 O 12 (LLZO), are promising candidates for all solid-state batteries. Generally, SSEs are synthesized by solid-state reactions at high temperatures. The high temperature required to synthesize useful polymorphs (e.g., cubic phase, in the case of LLZO) increases their production cost. To lower the synthesis temperature, several approaches, including doping and crystallite size control via sol-gel processes, have been explored. Recently, electrospinning was used to synthesize the inorganic SSE fibers to control the crystallite size and lower the calcination temperature. Several publications followed that investigated the properties of fibers and demonstrated the use of these fibers in inorganic-polymer composite SSEs. This paper presents a concise discussion of electrospinning, the parameters that control fiber morphology, the synthesis of inorganic SSE fibers, the effect of sintering conditions on the fiber morphology and composition, and the recent use of these fibers in making composite SSEs and other battery applications. Additionally, most of the discussion focuses on LLZO, but this paper also discusses applications of other types of electrospun inorganic electrolyte fibers, the challenges of using these fibers, and possible future directions in this research field.

25 ENERGY STORAGE↗

DOE OSTI2024

Selected humanization of yeast U1 snRNP leads to global suppression of pre-mRNA splicing and mitochondrial dysfunction in the budding yeast

The recognition of the 5′ splice site (5′ ss) is one of the earliest steps of pre-mRNA splicing. To better understand, the mechanism and regulation of 5′ ss recognition, we selectively humanized components of the yeast U1 (yU1) snRNP to reveal the function of these components in 5′ ss recognition and splicing. We targeted U1C and Luc7, two proteins that interact with and stabilize the yU1 snRNA and the 5′ ss RNA duplex. We replaced the zinc-finger (ZnF) domain of yeast U1C (yU1C) with its human counterpart, which resulted in a cold-sensitive growth phenotype and moderate splicing defects. We next added an auxin-inducible degron to yeast Luc7 (yLuc7) protein (to mimic the lack of Luc7Ls in human U1 snRNP). We found that Luc7-depleted yU1 snRNP resulted in the concomitant loss of Prp40 and Snu71 (two other essential yU1 snRNP proteins), and further biochemical analyses suggest a model of how these three proteins interact with each other in the U1 snRNP. The loss of these proteins resulted in a significant growth retardation accompanied by a global suppression of pre-mRNA splicing. The splicing suppression led to mitochondrial dysfunction as revealed by a release of Fe 2+ into the growth medium and an induction of mitochondrial reactive oxygen species. Together, these observations indicate that the human U1C ZnF can substitute that of yeast, Luc7 is essential for the incorporation of the Luc7–Prp40–Snu71 trimer into yU1 snRNP, and splicing plays a major role in the regulation of mitochondrial function in yeast.

Biochemistry & Molecular Biology↗

DOE OSTI2020

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein

Molecular Dynamics (MD) simulations seek to provide atomic-level insights into conformationally dynamic biological systems at experimentally relevant time resolutions, such as those afforded by single-molecule fluorescence measurements. However, limitations in the time scales of MD simulations and the time resolution of single-molecule measurements have challenged efforts to obtain overlapping temporal regimes required for close quantitative comparisons. Achieving such overlap has the potential to provide novel theories, hypotheses, and interpretations that can inform idealized experimental designs that maximize the detection of the desired reaction coordinate. Here, we report MD simulations at time scales overlapping with in vitro single-molecule Förster (fluorescence) resonance energy transfer (smFRET) measurements of the amino acid binding protein LIV-BP SS at sub-millisecond resolution. Computationally efficient all-atom structure-based simulations, calibrated against explicit solvent simulations, were employed for sampling multiple cycles of LIV-BP SS clamshell-like conformational changes on the time scale of seconds, examining the relationship between these events and those observed by smFRET. The MD simulations agree with the smFRET measurements and provide valuable information on local dynamics of fluorophores at their sites of attachment on LIV-BP SS and the correlations between fluorophore motions and large-scale conformational changes between LIV-BP SS domains. We further utilize the MD simulations to inform the interpretation of smFRET data, including Förster radius (R 0 ) and fluorophore orientation factor (κ 2 ) determinations. The approach we describe can be readily extended to distinct biochemical systems, allowing for the interpretation of any FRET system conjugated to protein or ribonucleoprotein complexes, including those with more conformational processes, as well as those implementing multi-color smFRET.

59 BASIC BIOLOGICAL SCIENCES↗