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At least 217 records · Page 12

Proteo-Genomic Analysis Identifies Two Major Sites of Vulnerability on Ebolavirus Glycoprotein for Neutralizing Antibodies in Convalescent Human Plasma

Three clinically relevant ebolaviruses – Ebola (EBOV), Bundibugyo (BDBV), and Sudan (SUDV) viruses, are responsible for severe disease and occasional deadly outbreaks in Africa. The largest Ebola virus disease (EVD) epidemic to date in 2013-2016 in West Africa highlighted the urgent need for countermeasures, leading to the development and FDA approval of the Ebola virus vaccine rVSV-ZEBOV (Ervebo ® ) in 2020 and two monoclonal antibody (mAb)-based therapeutics (Inmazeb ® [atoltivimab, maftivimab, and odesivimab-ebgn] and Ebanga ® (ansuvimab-zykl) in 2020. The humoral response plays an indispensable role in ebolavirus immunity, based on studies of mAbs isolated from the antibody genes in peripheral blood circulating ebolavirus-specific human memory B cells. However, antibodies in the body are not secreted by circulating memory B cells in the blood but rather principally by plasma cells in the bone marrow. Little is known about the protective polyclonal antibody responses in convalescent plasma. Here we exploited both single-cell antibody gene sequencing and proteomic sequencing approaches to assess the composition of the ebolavirus glycoprotein (GP)-reactive antibody repertoire in the plasma of an EVD survivor. We first identified 1,512 GP-specific mAb variable gene sequences from single cells in the memory B cell compartment. Using mass spectrometric analysis of the corresponding GP-specific plasma IgG, we found that only a portion of the large B cell antibody repertoire was represented in the plasma. Molecular and functional analysis of proteomics-identified mAbs revealed recognition of epitopes in three major antigenic sites - the GP head domain, the glycan cap, and the base region, with a high prevalence of neutralizing and protective mAb specificities that targeted the base and glycan cap regions on the GP. Polyclonal plasma antibodies from the survivor reacted broadly to EBOV, BDBV, and SUDV GP, while reactivity of the potently neutralizing mAbs we identified was limited mostly to the homologous EBOV GP. Together these results reveal a restricted diversity of neutralizing humoral response in which mAbs targeting two antigenic sites on GP – glycan cap and base – play a principal role in plasma-antibody-mediated protective immunity against EVD.

59 BASIC BIOLOGICAL SCIENCES↗

Maternal Broadly Neutralizing Antibodies Can Select for Neutralization-Resistant, Infant-Transmitted/Founder HIV Variants

Each year, >180,000 infants become infected via mother-to-child transmission (MTCT) of HIV despite the availability of effective maternal antiretroviral treatments, underlining the need for a maternal HIV vaccine. We characterized 224 maternal HIV envelope (Env)-specific IgG monoclonal antibodies (MAbs) from seven nontransmitting and transmitting HIV-infected U.S. and Malawian mothers and examined their neutralization activities against nontransmitted autologous circulating viruses and infant-transmitted founder (infant-T/F) viruses. Only a small subset of maternal viruses, 3 of 72 (4%), were weakly neutralized by maternal linear V3 epitope-specific IgG MAbs, whereas 6 out of 6 (100%) infant-T/F viruses were neutralization resistant to these V3-specific IgG MAbs. We also show that maternal-plasma broadly neutralizing antibody (bNAb) responses targeting the V3 glycan supersite in a transmitting woman may have selected for an N332 V3 glycan neutralization-resistant infant-T/F virus. These data have important implications for bNAb-eliciting vaccines and passively administered bNAbs in the setting of MTCT.

59 BASIC BIOLOGICAL SCIENCES↗

Simulation study of the ionizing front in the critical ionization velocity phenomenon

The simulation of the critical ionization velocity for a neutral gas cloud moving across the static magnetic field is presented. A low-beta plasma is studied, using a two and a half-dimensional electrostatic code linked with the Plasma and Neutral Interaction Code (Goertz and Machida, 1987). The physics of the ionizing front and the instabilities which occur there are discussed. Results are presented from four numerical runs designed so that the effects of the charge separation field can be distinguished from the wave heating.

Machida, S.↗

Kinetic modeling of neutral transport for a continuum gyrokinetic code

In this work we present the first-of-its-kind coupling of a continuum full- f gyrokinetic turbulence model with a 6D continuum model for kinetic neutrals, carried out using the Gkeyll code. Our objective is to improve the first-principle understanding of the role of neutrals in plasma fueling, detachment, and their interaction with edge plasma profiles and turbulence statistics. Our model includes only atomic hydrogen and incorporates electron-impact ionization, charge exchange, and wall recycling. These features have been successfully verified with analytical predictions and benchmarked with the DEGAS2 Monte Carlo neutral code. We carry out simulations for a scrape-off layer (SOL) with simplified geometry and National Spherical Torus Experiment parameters. We compare these results to a baseline simulation without neutrals and find that neutral interactions reduce the normalized density fluctuation levels and associated skewness and kurtosis, while increasing auto-correlation times. A flatter density profile is also observed, similar to the SOL density shoulder formation in experimental scenarios with high fueling.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The plasma environment during particle beam injection into space plasmas. I - Electron beams. II - Charge-neutral beams

A realistic electrostatic simulation model is used to investigate the plasma environment in the near vicinity of a spacecraft during the injection of electon beams from the spacecraft. The model is described, and the cases of injection into vacuum and into a low-density plasma are addressed. The relationship of the two-dimensional results to the purely field-aligned one-dimensional simulations is discussed. The dependence of the results on the ambient plasma density is investigated. Then, the properties of a charge-neutral beam and the plasma response are examined for the case where the beam has nonzero velocity components parallel and perpendicular to the magnetic field. The parameters used in the simulation are described, and the properties of the beam injection into the vacuum and in the case where a plasma is present are given.

Pritchett, P. L.↗

Atmospheric Lunar Tide in the Low Latitude Thermosphere-Ionosphere

We present simultaneous, independent measurements of the atmospheric semidiurnal lunar tide in neutral winds and plasma velocities from NASA's Ionospheric Connection Explorer, and in atomic oxygen 135.6 nm airglow measured by the Global-scale Observations of the Limb and Disk. Westward tidal winds near 115 km at the magnetic equator occur during part of the upward phase of the in-situ plasma drift. Vertical motions associated with the field-aligned plasma velocity occur away from the magnetic equator. The morphology of the lunar tide, and the phasing between the airglow and plasma velocities are consistent with E × B drift as a mechanism for linking neutral wind and plasma perturbations. This work provides the first observational quantification of global-scale E- and F-region coupling through E × B and field-aligned vertical drifts. Plain Language Summary: Tidal winds propagating upward from the neutral atmosphere influence ionospheric dynamo electric fields and vertical plasma drifts. However, these mechanisms have never been fully identified in comprehensive and simultaneous measurements spanning the ionosphere-thermosphere-mesosphere (ITM) system. The atmospheric lunar tide is an effective marker of ITM coupling because it originates at Earth's surface, propagates vertically, and is fully sampled in daytime-only and post-sunset satellite measurements. We utilize measurements from two new NASA missions to track the lunar tide in neutral and plasma velocities, and in an electron density proxy. Our work provides observational confirmation, and quantitative estimates of F-region vertical plasma motions driven by neutral winds and electrodynamical forces

Ruth S. Lieberman↗

Plasma Source for Charge Control

Plasma source neutralizes electrical charge on spacecraft. When triggered by command from spacecraft potential monitor or from control system, plasma apparatus responds within about 1 s, generating charged plasma of required polarity. Discharging system to be tested on Air Force Geophysics Laboratory BERT-1 (Beam Emission Rocket Test) sounding rocket.

Aston, G.↗

Medium-energy electrons and heavy ions in Jupiter's magnetosphere - Effects of lower hybrid wave-particle interactions

A theory of medium-energy (about keV) electrons and heavy ions in Jupiter's magnetosphere is presented. Lower hybrid waves are generated by the combined effects of a ring instability of neutral wind pickup ions and the modified two-stream instability associated with transport of cool Iogenic plasma. The quasi-linear energy diffusion coefficient for lower hybrid wave-particle interactions is evaluated, and several solutions to the diffusion equation are given. Calculations based on measured wave properties show that the noise substantially modifies the particle distribution functions. The effects are to accelerate superthermal ions and electrons to keV energies and to thermalize the pickup ions on time scales comparable to the particle residence time. The S(2+)/S(+) ratio at medium energies is a measure of the relative contribution from Iogenic thermal plasma and neutral wind ions, and this important quantity should be determined from future measurements. The theory also predicts a preferential acceleration of heavy ions with an accleration time that scales inversely with the root of the ion mass. Electrons accelerated by the process contribute to further reionization of the neutral wind by electron impact, thus providing a possible confirmation of Alfven's critical velocity effect in the Jovian magnetosphere.

Barbosa, D. D.↗

Sounding rocket measurements of suprathermal ion acceleration

Transverse ion acceleration has been observed at rocket altitudes between 500 and 1000 km due to (1) the injection of 100-200 eV argon plasma; (2) auroral electron precipitation; and (3) the injection of electromagnetic waves. Field-aligned currents necessary to neutralize the plasma injection payloads and naturally occurring in the aurora could be responsible for the ions observed in (1) and (2) above. Associated with the aurora, both bulk heating and tail heating are observed, sometimes simultaneously. In this case, either different masses are accelerated or different mechanisms are responsible. The bulk heating is closely correlated with the aurora structure while tail heating is not so well correlated. Recent high-time-resolution rocket ion data have revealed that the transverse acceleration process is of very short duration (about 100 ms) and occurs in a very limited volume (a few hundred kilometers along B and on the order of the ion gyrodiameter across B). Such impulse acceleration events are correlated with waves near the lower hybrid resonance.

Arnoldy, Roger L.↗

MHD stability trends and improved performance of LHD inward-shifted configurations: The role of the neutral beam current drive and thermal plasma density

The aim of the present study is to analyze the effect of the neutral beam current drive (NBCD), thermal plasma density, and NBI operational regime on the stability of pressure gradient-driven modes (PGDM) and Alfvén eigenmodes (AE) in LHD inward-shifted configurations. The stabilization of n/m = 1/2 PGDM (n toroidal mode and m poloidal mode) is observed in the discharge 167 800 during the co-NBCD phase. The iota profile evolution measured by motional stark effect diagnostic may indicate the iota profile up-shift caused by the co-NBCD can induce a non-resonant transition of the rational surface 1/2 before the mode stabilization. The evolution of the iota profile and continuum gaps in the discharge 167 805 during the ctr-NBCD phase leads to the stabilization of the AE, caused by the narrowing of the continuum gap as the iota profile down-shift. Opposite stability trends are identified for PGDM and AE stability with respect to the thermal plasma density. A larger thermal plasma density (larger thermal β) further enhances PGDM although the continuum gaps are narrower leading to configurations with stable AEs. The linear stability of AEs is analyzed using the gyro-fluid FAR3d code to reproduce the AE stability trends observed in the experiments with respect to the NBCD and thermal plasma density. The analysis of hypothetical scenarios dedicated to study different NBI operational regimes with respect to EP energy, and β and radial density profiles indicate off-axis NBI operation shows a higher EP β threshold to destabilize AEs compared to on-axis configuration. This is explained by the presence of a TAE gap in the inner plasma region, easily destabilized by an on-axis NBI injection. The control of the NBCD and thermal plasma in the discharge 167 800 shows a transitory stabilization of PGDM and AEs, as well as an improved discharge performance identified by an increment of the neutron fluxes.

Varela, Jacobo↗

Enhanced pedestal transport driven by edge collisionality on Alcator C-Mod and its role in regulating H-mode pedestal gradients

Experimental measurements of plasma and neutral profiles across the pedestal are used in conjunction with 2D edge modeling to examine pedestal stiffness in Alcator C-Mod H-mode plasmas. Enhanced D α experiments on Alcator C-Mod observed pedestal degradation and loss in confinement below a critical value of net power crossing the separatrix, P net = $P^{crit}_{net}$ ≈ 2.3 MW, in the absence of any external fueling. New analysis of ionization and particle flux profiles reveal saturation of the pedestal electron density, $n^{ped}_{e}$, despite continuous increases in ionization throughout the pedestal, inversely related to P net . A limi to the pedestal $\nabla$n e emerges as the particle flux, Γ D , continues to grow, implying increases in the effective particle diffusivity, D eff . This is well-correlated with the separatrix collisionality, $v^*_{sep}$ and a turbulence control parameter, α t , implying a possible transition in type of turbulence. The transition is well correlated with the experimentally observed value of $P^{crit}_{net}$. SOLPS-ITER modeling is performed for select discharges from the power scan, constrained with experimental electron and neutral densities, measured at the outer midpane. The modeling confirms general growth in D eff , consistent with experimental findings, and additionally suggests even larger growth in Χ e at the same $P^{crit}_{net}$.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Ion-neutral Coupling During Deep Solar Minimum

The equatorial ionosphere under conditions of deep solar minimum exhibits structuring due to tidal forces. Data from instruments carried by the Communication Navigation Outage Forecasting System (CNOFS) which was launched in April 2008 have been analyzed for the first 2 years following launch. The Planar Langmuir Probe (PLP), Ion Velocity Meter (IVM) and Vector Electric Field Investigation (VEFI) all detect periodic structures during the 20082010 period which appear to be tides. However when the tidal features detected by these instruments are compared, there are distinctive and significant differences between the observations. Tides in neutral densities measured by the Gravity Recovery and Climate Experiment (GRACE) satellite were also observed during June 2008. In addition, Broad Plasma Decreases (BPDs) appear as a deep absolute minimum in the plasma and neutral density tidal pattern. These are co-located with regions of large downward-directed ion meridional velocities and minima in the zonal drifts, all on the nightside. The region in which BPDs occur coincides with a peak in occurrence rate of dawn depletions in plasma density observed on the Defense Meterological Satellite Program (DMSP) spacecraft, as well as a minimum in radiance detected by UV imagers on the Thermosphere Ionosphere Mesosphere Energetics and Dynamics (TIMED) and IMAGE satellites

IVM↗

Hot ion plasmas from the cloud of neutral gases surrounding the Space Shuttle

Large intensities of hot positive ions are observed out to distances of several hundred meters from the Space Shuttle with a plasma analyzer on a small free-flying satellite, the Plasma Diagnostics Package. This ion plasma is inferred to be generated by the charge exchange of ionospheric O+ ions with a large cloud of water molecules from the Space Shuttle. The measured ion density ranges from about 30 to 10,000 H2O+ ions/cu cm. A model for the water vapor cloud provides the basis for density estimates as high as 10 to the 9th H2O molecules/cu cm at a distance of 50 m from the Space Shuttle. Thus, the Space Shuttle possesses a substantial coorbiting atmosphere.

Paterson, W. R.↗

Simulations of tokamak edge plasma turbulent fluctuations based on a minimal 3D model

In this study, a new simulation model for tokamak boundary plasma, SOLT3D, is implemented in the BOUT++ framework. The simulation model includes a set of dynamic equations describing collisional boundary plasma and neutral gas in the tokamak scrape-off layer and divertor region. The model is verified against standard linear plasma instabilities and available nonlinear results. For L-mode like conditions, SOLT3D reproduces characteristics of boundary plasma turbulent fluctuations that are similar to published experimental data, in terms of the amplitude and spatial dependence of the fluctuations. It also reproduces realistic plasma fluxes on material surfaces and expected Bohm-like effective radial transport. Plasma fluctuations inferred from the simulations imply inevitably a significant level of intrinsic 'noise' for axisymmetric tokamak plasma transport modeling, introducing errors on the order of unity. In particular, the toroidally averaged atomic rates below 5–10 eV are strongly modified by turbulent plasma fluctuations, which should significantly affect the standard axisymmetric modeling of the tokamak edge plasma and divertor.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Time-Dependent Boundary Modeling to Inform Design of SPARC Diagnostic and Actuators

The purpose of this work was to inform the design of diagnostic and actuator systems for a new experimental facility for Commonwealth Fusion Systems (CFS), called SPARC [Creely2020], using time-dependent plasma boundary simulations with the Scrape Off Layer Plasma Simulator (SOLPS) code [Wiesen2015]. The SPARC tokamak is a device that aims to demonstrate fusion energy production and high-field plasma operating scenarios. The developed technologies will be incorporated into a net-electricity pilot that will demonstrate approximately 200MW of electric power. A major difference from other private industry fusion companies is the use of a standard aspect ratio, but at a high magnetic field strength, which provides a well-established physics basis and a modest extrapolation to reactor operation. Time-dependent simulations were used to inform the design of main-chamber plasma facing components, which are protected by feedback control of the heat and particle loads during high power operation. The simulations provide the timescales and magnitudes of plasma and neutral particle response useful for determining the position and operation of diagnostics and actuators that will enable control. The plasma response and phase-space diagrams also provide input into advanced model-based control schemes, which are envisioned for later SPARC operation. Model-based control can reduce the risk of component failure, which would require expensive in-situ repairs and the associated delays, by predicting the system response to actuators over a short time-horizon.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

TEBPP: Theoretical and Experimental study of Beam-Plasma-Physics

The interaction of an electron beam (0 to 10 keV, 0 to 1.5 Amp) with the plasma and neutral atmospheres at 200 to 400 km altitude is studied with emphasis on applications to near Earth and cosmical plasmas. The interaction occurs in four space time regions: (1) near electron gun, beam coming into equilibrium with medium; (2) equilibrium propagation in ionosphere; (3) ahead of beam pulse, temporal and spatial precursors; (4) behind a beam pulse. While region 2 is of the greatest interest, it is essential to study Region 1 because it determines the characteristics of the beam as it enters 2 through 4.

Anderson, H. R.↗

Modelling of sawtooth-induced fast ion transport in positive and negative triangularity in TCV

Internal kinks are a common magneto hydro-dynamic (MHD) instability observed in tokamak operation when the q profile in the plasma core is close to unity. This MHD instability impacts both the transport of the bulk plasma (current, particle and energy transport) and minority species, such as fast ions. In TCV (R 0 /a = 0.88 m/0.25 m) the fast ion population is generated in the plasma by neutral beam tangential injection of energies up to 28 keV. TCV features 16 active shaping coils permitting a great flexibility in plasma shape, including negative triangularity (δ) configurations that show surprisingly high confinement. This study focuses on the transport of fast ions induced by sawteeth, by comparing two triangularity cases and simulation results with experimental data. Comparison of two equilibria with opposite δ shows that the fast ion drifts are larger for δ < 0. Furthermore, the sawtooth-induced transport in this case is larger than δ > 0 in similar conditions. Additionally, comparison with experimental data confirms the dominance of the modification of thermal kinetic profiles following the sawtooth crash in explaining drops in the neutron rates and FIDA signals. Additional fast ion diffusion, however, improves the interpretation of the experimental data. For δ < 0, the amplitude of the perturbation better representing the experimental data is larger. Finaly, an exploratory study for 50 keV particles (soon available in TCV) shows that the situation does not worsen for such particles.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Two-stream modeling of plasmaspheric refilling

Plasmaspheric refilling on an L = 4 flux tube was studied by using a time-dependent, hydrodynamic plasmaspheric flow model in which the ion streams from the two hemispheres are treated as distinct fluids. In the model the continuity, momentum, and energy equations of a two-ion (O(+) and H(+)), quasi-neutral, currentless plasma are solved along a closed geomagnetic field line; diffusive equilibrium is not assumed. collisions between all stream pairs and with neutral species are included. The model includes a corotating, tilted dipole magnetic field and neutral winds. Ionospheric sources and sinks are accounted for in a self-consistent manner. Electrons are assumed to be heated by photoelectrons. The model flux tube extends from a 200-km altitude in one hemisphere to a 200-km altitude in the other hemisphere. Initially, the upwelling streams pass through each other practically unimpeded. When the streams approach the boundary in the conjugate ionosphere, a shock develops there, which moves upward and dissipates slowly; at about the same time a reverse shock develops in the hemisphere of origin, which moves upward. After about 1 hour, large shocks develop in each stream near the equator; these shocks move toward the equator and downward after crossing the equator. However, these shocks are probably artificial, because counterstreaming flows occur in each H(+) fluid, which the model can only handle by creating shocks.

Guiter, S. M.↗