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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 217 records · Page 12

SU-F-P-49: Comparison of Mapcheck 2 Commission for Photon and Electron Beams

Purpose: We will investigate the performance variation of the MapCheck2 detector array with different array calibration and dose calibration pairs from different radiation therapy machine. Methods: A MapCheck2 detector array was calibrated on 3 Elekta accelerators with different energy of photon (6 MV, 10 MV, 15 MV and 18 MV) and electron (6 MeV, 9 MeV, 12 MeV, 15 MeV, 18 MeV and 20 MeV) beams. Dose calibration was conducted by referring a water phantom measurement following TG-51 protocol and commission data for each accelerator. A 10 cm × 10 cm beam was measured. This measured map was morphed by applying different calibration pairs. Then the difference was quantified by comparing the doses and similarity using gamma analysis of criteria (0.5 %, 0 mm). Profile variation was evaluated on a same dataset with different calibration pairs. The passing rate of an IMRT QA planar dose was calculated by using 3 mm and 3% criteria and compared with respect to each calibration pairs. Results: In this study, a dose variation up to 0.67% for matched photons and 1.0% for electron beams is observed. Differences of flatness and symmetry can be as high as 1% and 0.7% respectively. Gamma analysis shows a passing rate ranging from 34% to 85% for the standard 10 × 10 cm field. Conclusion: Our work demonstrated that a customized array calibration and dose calibration for each machine is preferred to fulfill a high standard patient QA task.

60 APPLIED LIFE SCIENCES↗

SU-F-T-336: A Quick Auto-Planning (QAP) Method for Patient Intensity Modulated Radiotherapy (IMRT)

Purpose: The aim of this study is to develop a quick auto-planning system that permits fast patient IMRT planning with conformal dose to the target without manual field alignment and time-consuming dose distribution optimization. Methods: The planning target volume (PTV) of the source and the target patient were projected to the iso-center plane in certain beameye- view directions to derive the 2D projected shapes. Assuming the target interior was isotropic for each beam direction boundary analysis under polar coordinate was performed to map the source shape boundary to the target shape boundary to derive the source-to-target shape mapping function. The derived shape mapping function was used to morph the source beam aperture to the target beam aperture over all segments in each beam direction. The target beam weights were re-calculated to deliver the same dose to the reference point (iso-center) as the source beam did in the source plan. The approach was tested on two rectum patients (one source patient and one target patient). Results: The IMRT planning time by QAP was 5 seconds on a laptop computer. The dose volume histograms and the dose distribution showed the target patient had the similar PTV dose coverage and OAR dose sparing with the source patient. Conclusion: The QAP system can instantly and automatically finish the IMRT planning without dose optimization.

60 APPLIED LIFE SCIENCES↗

The Beauty of Physics

Here, the idea of a liberal arts education is deeply rooted in our academic history. Originally based in the goal of learning about the classical literature of Greece and Rome, the approach has morphed over the years into a broad course of study, including mathematics, literature, history, languages, philosophy, art and the sciences. It is those last two subjects that caused the two of us to come to meet one another.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

3D polycatenated architected materials

Architected materials derive their properties from the geometric arrangement of their internal structural elements. Their designs rely on continuous networks of members to control the global mechanical behavior of the bulk. Here, in this study, we introduce a class of materials that consist of discrete concatenated rings or cage particles interlocked in three-dimensional networks, forming polycatenated architected materials (PAMs). We propose a general design framework that translates arbitrary crystalline networks into particle concatenations and geometries. In response to small external loads, PAMs behave like non-Newtonian fluids, showing both shear-thinning and shear-thickening responses, which can be controlled by their catenation topologies. At larger strains, PAMs behave like lattices and foams, with a nonlinear stress-strain relation. At microscale, we demonstrate that PAMs can change their shapes in response to applied electrostatic charges. The distinctive properties of PAMs pave the path for developing stimuli-responsive materials, energy-absorbing systems, and morphing architectures.

36 MATERIALS SCIENCE↗

Search for low mass dark matter in DarkSide-50: the bayesian network approach

Abstract We present a novel approach for the search of dark matter in the DarkSide-50 experiment, relying on Bayesian Networks. This method incorporates the detector response model into the likelihood function, explicitly maintaining the connection with the quantity of interest. No assumptions about the linearity of the problem or the shape of the probability distribution functions are required, and there is no need to morph signal and background spectra as a function of nuisance parameters. By expressing the problem in terms of Bayesian Networks, we have developed an inference algorithm based on a Markov Chain Monte Carlo to calculate the posterior probability. A clever description of the detector response model in terms of parametric matrices allows us to study the impact of systematic variations of any parameter on the final results. Our approach not only provides the desired information on the parameter of interest, but also potential constraints on the response model. Our results are consistent with recent published analyses and further refine the parameters of the detector response model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

How Often Does It Really Rain?

The perception about whether a place is a nice place to live often depends on how often it rains (or snows). The frequency relates to how dreary the weather appears, and it is the duration much more than the amount that clouds perceptions. Yet, information about the frequency of rainfall, or precipitation in general, is spotty at best. In this paper, we analyze a new near-global (60°N–60°S) dataset at hourly time scales and 0.25° resolution. The dataset, the newly calibrated Climate Prediction Center morphing technique (CMORPH), enables comparison of results with 3-hourly and daily data, which is what has previously been available, and seasonal aspects are also examined. The results are quite sensitive to both the spatial scales of the data and their temporal resolutions, and it is important to get down to hourly values to gain a proper appreciation of the true frequency. At 1° resolution, values are 35% higher than for 0.25°. At 3-hourly resolution, they are about 25% higher than hourly, and at daily resolution, they are about 150% higher than hourly on average. Overall, near-global (60°N–60°S) precipitation occurs 11.0% ± 1.1% (1 sigma) of the time or, alternatively, 89.0% of the time it is not precipitating. But outside of the intertropical and South Pacific convergence zones, where values exceed 30%, and the arid and desert regions, where values are below 4%, the rates are more like 10% or so, and over land where most people live, values are closer to about 8%.

54 ENVIRONMENTAL SCIENCES↗

Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes

The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nomenclatural changes is crucial for a broad range of users and taxonomists. The unambiguous application of names is assured by the preservation of nomenclatural history and the physical organisms representing a name. Fungi are extremely diverse in terms of ecology, lifestyle, and methods of study. Predominantly unicellular fungi known as yeasts are usually investigated as living cultures. Methods to characterize yeasts include physiological (growth) tests and experiments to induce a sexual morph; both methods require viable cultures. Thus, the preservation and availability of viable reference cultures are important, and cultures representing reference material are cited in species descriptions. Historical surveys revealed drawbacks and inconsistencies between past practices and modern requirements as stated in the International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp). Improper typification of yeasts is a common problem, resulting in a large number invalid yeast species names. With this opinion letter, we address the problem that culturable microorganisms, notably some fungi and algae, require specific provisions under the ICNafp. We use yeasts as a prominent example of fungi known from cultures. But viable type material is important not only for yeasts, but also for other cultivable Fungi that are characterized by particular morphological structures (a specific type of spores), growth properties, and secondary metabolites. We summarize potential proposals which, in our opinion, will improve the stability of fungal names, in particular by protecting those names for which the reference material can be traced back to the original isolate.

59 BASIC BIOLOGICAL SCIENCES↗

CMCSN: Structure and dynamics of water and aqueous solutions in materials science

This award has contributed to build a network of scientists interested in the structure and dynamics of water. Such network extends well beyond the PI and the co-PIs and includes both theoreticians and experimentalists. Scientific interactions within this community have been fostered by three workshops supported by the grant. The first workshop was held at Princeton University on December 6-8, 2010. The second workshop was held at the Talaris Conference Center in Seattle on February 10-12, 2012. The third workshop was held at UC Davis on June 19-22, 2013. Each workshop had 40-50 participants and about 20 speakers. The workshops have been very successful and stimulated ongoing discussions within the water community. This debate is lasting beyond the time frame set by the grant. The following events are just a few examples: (i) the month long activity on "Water: the most anomalous liquid" organized at NORDITA (Stockholm) in October- November 2014 by A. Nilsson and L. Petterson who participated in all the three CMCSN sponsored workshops; (ii) the workshop on "ice nucleation" organized by R. Car, P. Debenedetti and F. Stillinger at the Princeton Center for Theoretical Science in April 23- 24 2015; (iii) the 10 days workshop on water organized by R. Car and F. Mallamace at the E. Maiorana Centre in Erice (Sicily) in July 2016, an activity that will morph into a regular summer school of the E. Maiorana Centre in the years to come under the directorship of R. Car, F. Mallamace (U. Messina), A. Nilsson (U. Stockholm) and L. Xu (Beijing U.). All these activities were stimulated by the scientific discussions within the network initiated by this CMCSN grant.

36 MATERIALS SCIENCE↗

ATDM ASD report for ECP October 2018

In October the team merged in updated ATDM/Trilinos configuration to include SPARC requirements. Assisted and worked on issues identified by the EMPIRE switchover to the ATDM/Trilinos configuration. Progress was made on automating dashboard triaging. Discovered and began addressing issues with mixed language calling with gcc-7.2 on Power8. Worked on new Python tool to filter CDASH reports to only show new issues. Completed ECP ST review. In October the team put an algorithm in place to prevent inverted elements in SPARC during refinement and worked on tests to morph mesher and should be ready for SGM integration soon. The team worked on solver rebalance and corrected issues. Complete SIMD work. Worked out next steps for solver improvements for EMPIRE. Adjusted some solver settings and to improve performance; strong scaling curves are flat instead of ascending etc. Worked on optimizing kernels for SPARC. Completed ECP ST reviews. The team worked on cleaning up branch for merge into SPARC master dev branch. Progress was made building scripts for catalyst builds on all HPC platforms of interest. Worked on adding TuckerMPl reader as plugin for catalyst. Completed ECP project review. Work has continued on NimbleSM, which now runs in a container and can be used modularly with an MPI code. The team also made progress on a qthreads version of NibleSM. Worked on build system issues within NimbleSM and Sierra for GPUs. Progressed on getting kookfied material models in NimbleSM. The team incorporated panel feedback form ECP project reviews into FY19 plans.

97 MATHEMATICS AND COMPUTING↗

Science and Technology Review (May 2021)

Lawrence Livermore has been on the forefront of cancer research for over 60 years. Early interest in cancer statistics stemmed from the nature of work, particularly how radiation affects humans. The Department of Energy funded research to investigate the effects of radiation on workers with long term exposure. This research quickly morphed into a wider breadth of cancer research topics, including the use of advanced computational models to investigate mutations in genes. Livermore is regarded as a leader in cancer research, from the Human Genome Center to its participation in the National Cancer Institute’s “Moonshot” project. The highly interdisciplinary Laboratory unites research in one more example: bringing together cancer biology, 3D printing, high-performance computing, big data, and materials science to address this pressing medical challenge.

36 MATERIALS SCIENCE↗

MST e-News Spring 2022

For Jeremy Mitchell, a scientific career grounded in a passion for geology has morphed into a decades-long fascination with plutonium. Just as a geologist investigates a rock’s structure and its history to unlock its secrets, so too does Mitchell gather facts and weigh evidence to crack the code of a material not readily accessible to most scientists—and at the core of the Lab’s national security mission.

58 GEOSCIENCES↗

Ionic Polymers Under Dynamic Conditions

Combining neutron scattering tools and exascale molecular dynamics simulations, research was carried out to resolve the structure and motion of ionic polymers under dynamic conditions. Ionizable polymers constitute a key component in current and potential transformative lightweight energy generation and storage devices. However, the inherent segregation of these polymers to ionic clusters and non-ionic domains, or clusters, that on one hand enables their function, confines the dynamics of the polymer chains, leading to the formation of far-from equilibrium states. These non-equilibrium states morph under in situ conditions, affecting the performance-longevity-safety-cost foundation that underlines the use of these polymers. On route to controlling the assemblies of ionizable polymers into stable functional materials, the research focused on a) understanding the inherent confinement of the polymer chains by the ionic clusters and b) resolving of the response of these polymers to flow fields that are integral to the processing and function of these macromolecules.

36 MATERIALS SCIENCE↗

U.S. Research Impact Alliance IMPACT Accelerator

The U.S. Research Impact Alliance (USRIA) was created with a vision to leverage successful models that accelerate technology development and commercialization, and support startup businesses based upon federal research investments. Building upon lessons learned and feedback from cohort teams, the USRIA programs have morphed into customized solutions that offer services which provide the most impact to startup businesses. Based upon discussions with small and startup businesses, entrepreneurs, and technology developers, a variety of resources have been developed to support each of these target audiences. USRIA created program differentiators to offer one-on-one engagement and direct communication with cohort teams, highly relevant conversations with targeted introductions, and minimal “class” time (only used when an issue is applicable to all cohort members).

43 PARTICLE ACCELERATORS↗

Design and Testing of a Scaled Demonstrator Turbine at the National Wind Technology Center: Preprint

This paper discusses the design, manufacturing, and planned testing of a scaled demonstrator turbine as part of the Segmented Ultralight Morphing Rotor (SUMR) project funded by the Advanced Project Research Agency - Energy (ARPA-E). The scaled demonstrator (SUMR-D) is based off of a downwind, 13.2 MW SUMR design. This scaled rotor will be tested on the CART2 turbine at the National Wind Technology Center to verify the scaling methodology and planned control scheme. The design was done in an iterative fashion among six teams focused on aerodynamics, structures, and controls. This process included extensive load analysis, modification for manufacturability, adaptations required for testing on the CART2, and ground proof loading. The details of this process are presented here, concluding with planned testing and expectations of performance.

17 WIND ENERGY↗

Bioinformatic teaching resources - for educators, by educators - using KBase, a free, user-friendly, open source platform

Over the past year, biology educators and staff at the Department of Energy Systems Biology Knowledgebase (KBase) initiated a collaborative effort to develop a curriculum for bioinformatics education. KBase is a free and easily accessible data science platform that integrates many bioinformatics resources into a graphical user interface built upon reproducible analysis notebooks. KBase held conversations with college and high school instructors to understand how KBase could potentially support their educational goals. These conversations morphed into a working group of biological and data science instructors that adapted the KBase platform to their curriculum needs, specifically around concepts in Genomics, Metagenomics, Pangenomics, and Phylogenetics. The KBase Educators Working Group developed modular, adaptable, and customizable instructional units. Each instructional module contains teaching resources, publicly available data, analysis tools, and markdown capability to tailor instructions and learning goals for each class. The online user interface enables students to conduct hands-on data science research and analyses without requiring programming skills or their own computational resources (these are provided by KBase). Alongside these resources, KBase continues to work with instructors, supporting the development of additional curriculum modules. For anyone new to the platform, KBase, and the growing KBase Educators Organization, provides a community network, accompanied by community-sourced guidelines, instructional templates, and peer support to use KBase within a classroom whether virtual or in-person.

59 BASIC BIOLOGICAL SCIENCES↗

Modeling and Design Parameter Optimization to Improve the Sensitivity of a Bimorph Polysilicon-Based MEMS Sensor for Helium Detection

Helium is integral in several industries, including nuclear waste management and semiconductors. Thus, developing a sensing method for detecting helium is essential to ensure the proper operation of such facilities. Several approaches can be used for helium detection, including based on the high thermal conductivity of helium, which is several times higher than air. This work utilizes the high thermal conductivity of helium to design and analyze a bimorph MEMS sensor for helium sensing applications. COMSOL Multiphysics software (version 6.2) is used to carry out this investigation. The sensor is constructed from poly-silicon and SiO 2 materials with a trenched cantilever beam configuration. The sensor is electrically heated, and its morphed displacement depends on the surrounding gas’s composition, which decreases in the presence of helium. Several factors were investigated to probe their effect on the sensor’s sensitivity to helium, including the thickness of the poly-silicon layer, the configuration of the trench, and the thickness and location of SiO 2 layer. The simulations showed that the best performance, up to 2 ppm helium detection level, can be achieved with thinner beams and medium trench lengths.

47 OTHER INSTRUMENTATION↗

Application of transport-based metric for continuous interpolation between cryo-EM density maps

Cryogenic electron microscopy (cryo-EM) has become widely used for the past few years in structural biology, to collect single images of macromolecules "frozen in time". As this technique facilitates the identification of multiple conformational states adopted by the same molecule, a direct product of it is a set of 3D volumes, also called EM maps. To gain more insights on the possible mechanisms that govern transitions between different states, and hence the mode of action of a molecule, we recently introduced a bioinformatic tool that interpolates and generates morphing trajectories joining two given EM maps. This tool is based on recent advances made in optimal transport, that allow efficient evaluation of Wasserstein barycenters of 3D shapes. As the overall performance of the method depends on various key parameters, including the sensitivity of the regularization parameter, we performed various numerical experiments to demonstrate how MorphOT can be applied in different contexts and settings. Finally, we discuss current limitations and further potential connections between other optimal transport theories and the conformational heterogeneity problem inherent with cryo-EM data.

3D shapes↗