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At least 217 records · Page 12

Compressive Neural Representations of Volumetric Scalar Fields

Here, we present an approach for compressing volumetric scalar fields using implicit neural representations. Our approach represents a scalar field as a learned function, wherein a neural network maps a point in the domain to an output scalar value. By setting the number of weights of the neural network to be smaller than the input size, we achieve compressed representations of scalar fields, thus framing compression as a type of function approximation. Combined with carefully quantizing network weights, we show that this approach yields highly compact representations that outperform state-of-the-art volume compression approaches. The conceptual simplicity of our approach enables a number of benefits, such as support for time-varying scalar fields, optimizing to preserve spatial gradients, and random-access field evaluation. We study the impact of network design choices on compression performance, highlighting how simple network architectures are effective for a broad range of volumes.

97 MATHEMATICS AND COMPUTING↗

Domain Aware Deep-learning Algorithms Integrated with Scientific-computing Technologies (DADAIST)

This technical report summarized the contribution of the DADAIST project funded by the Data Model Convergence Initiative via the Laboratory Directed Research and Development (LDRD) investments at Pacific Northwest National Laboratory (PNNL). Specifically, we report the development of the NeuroMANCER (Neural Modules with Adaptive Nonlinear Constraints and Efficient Regularizations), a new open-source Scientific Machine Learning library for formulating and solving parametric constrained optimization problems, physics-informed system identification, and parametric optimal control problems. NeuroMANCER is using differentiable programming to combine modern data-driven models and optimization modeling language into a coherent algorithmic and software framework. NeuroMANCER is a Pytorch-based framework and adopts much of its philosophy focused on research and development, rapid prototyping, and streamlined deployment. Strong emphasis is given to extensibility, interoperability with the PyTorch ecosystem, and quick adaptability to custom domain problems. Neuromancer repository contains a comprehensive library of differentiable modules, including custom activation functions, matrix factorizations, deep learning architectures, neural differential equations, differential equation solvers, implicit layers such as iterative solvers, high-level API for symbolic expressions, API for modeling and control of dynamical systems, and extensive set of tutorial code examples in the form of python scripts and jupyter notebooks.

97 MATHEMATICS AND COMPUTING↗

Finite element methodology for transient conduction/forced-convection thermal analysis

Finite element methodology for steady state thermal analysis of convectively cooled structures has been extended for transient analysis. The finite elements are based on representing the fluid passages by fluid bulk-temperature nodes and fluid-solid interface nodes. The formulation of the finite element equations for a typical flow passage is based on the weighted residual method with upwind weighting functions. Computer implementation of the convective finite element methodology using explicit and implicit time integration algorithms is described. Accuracy and efficiency of the methodology is evaluated by comparisons with analytical solutions and finite-difference lumped-parameter analyses. The comparative analyses demonstrate that finite element conduction/conduction methodology may be used to predict transient temperatures with an accuracy equal or superior to the lumped-parameter finite-difference method.

Thornton, E. A.↗

Heating and melting of small icy satellites by the decay of 26Al

We study the effect of radiogenic heating due to 26Al on the thermal evolution of small icy satellites. Our object is to find the extent of internal melting as a function of the satellite radius and of the initial 26Al abundance. The implicit assumption, based on observations of young stars, is that planet and satellite accretion occurred on a time scale of approximately 10(6) yr (comparable with the lifetime of 26Al). The icy satellites are modeled as spheres of initially amorphous ice, with chondritic abundances of 40K, 232Th, 235U, 238U, corresponding to an ice/dust mass ratio of 1. Evolutionary calculations are carried out, spanning 4.5 x 10(9) yr, for different combinations of the two free parameters. Heat transfer by subsolidus convection is neglected for these small satellites. Our main conclusion is that the initial 26Al abundance capable of melting icy bodies of satellite size to a significant extent is more than 10 times lower than that prevailing in the interstellar medium (or that inferred from the Ca-Al rich inclusions of the Allende meteorite, approximately 7 x 10(-7) by mass). We find, for example, that an initial 26Al mass fraction of approximately 4 x 10(-8) is sufficient for melting almost completely icy spheres with radii of 800 km, typical of the larger icy planetary satellites. We also find that for any given 26Al abundance, there is a narrow range of radii below which only marginal melting occurs and above which most of the ice melts (and refreezes later). Since extensive melting may have important consequences, such as differentiation, gas release, and volcanic activity, the effect of 26Al should be included in future studies of satellite interiors.

Non-NASA Center↗

A Study of Turbulence-Driven Inward Momentum Flux & Construction of a Difference Scheme for Fokker-Planck-Landau Operator

Momentum transport driven by microinstability is studied via analytic theories, gyrokinetic simulations, and experimental data analysis. A scenario for rotation profile evolution is constructed based on experimental observation that parallel flow initiates at edge region and penetrates into core region of tokamak [1]. In particular, turbulent diffusion and inward convective pinch are studied according to this scenario. For study of convective momentum pinch, toroidal ion temperature gradient mode near marginal stability is examined in kinetic limit. It is found from quasilinear estimation that the inward turbulent equipartition momentum pinch remains as the most robust part of pinch. In addition, it is found that ion temperature gradient driven momentum pinch is inward for typical parameters, while ion density gradient driven momentum pinch is outward. It is shown by theoretical formulas and experimental data analysis that momentum pinch velocity is sensitive to the electron to ion temperature ratio. For study of diffusive momentum transport, parallel shear flow instability is studied in fluid limit. Diffusion coefficient using mixing length estimate from nonlocal theory reveals that it has a strong dependence on the parallel flow shear and is mainly carried by fluctuations in short wavelength regime. Gyrokinetic simulation of collisionless parallel shear flow instability shows that the analytic prediction of diffusion coefficient is comparable to numerical values in the linear phase of the simulations. In the nonlinear phase, fluctuation energy gets transferred to the long wavelength regime. A two-dimensional, uniform velocity-grid based solver for the nonlinear Fokker-Planck-Landau (FPL) collision operator has been developed in the limit of strong magnetic field. The conservative and entropy increasing semidiscretized numerical scheme for the isotropic FPL equation by C. Buet et al. (2002) has been extended to 2D velocity space. A Picard fixed point method is used for semi-implicit time advance. One time evaluation of interpolation coefficients for probability distribution function is introduced so that numerical equilibrium is achieved with Maxwellian. However, positivity property is sacrificed at the saving of computational costs. In addition, a highly practical method is suggested to apply the velocity-grid based collision solver to particle-in-cell code.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A least-squares finite element method based on the Helmholtz decomposition for hyperbolic balance laws

In this paper, a least-squares finite element method for scalar nonlinear hyperbolic balance laws is proposed and studied. The approach is based on a formulation that utilizes an appropriate Helmholtz decomposition of the flux vector and is related to the standard notion of a weak solution. This relationship, together with a corresponding connection to negative-norm least-squares, is described in detail. As a consequence, an important numerical conservation theorem is obtained, similar to the famous Lax–Wendroff theorem. The numerical conservation properties of the method in this paper do not fall precisely in the framework introduced by Lax and Wendroff, but they are similar in spirit as they guarantee that when L 2 convergence holds, the resulting approximations approach a weak solution to the hyperbolic problem. The least-squares functional is continuous and coercive in an H -1 -type norm, but not L 2 -coercive. Nevertheless, the L 2 convergence properties of the method are discussed. Convergence can be obtained either by an explicit regularization of the functional, that provides control of the L 2 norm, or by properly choosing the finite element spaces, providing implicit control of the L 2 norm. Numerical results for the inviscid Burgers equation with discontinuous source terms are shown, demonstrating the L 2 convergence of the obtained approximations to the physically admissible solution. The numerical method utilizes a least-squares functional, minimized on finite element spaces, and a Gauss–Newton technique with nested iteration. Finally, we believe that the linear systems encountered with this formulation are amenable to multigrid techniques and combining the method with adaptive mesh refinement would make this approach an efficient tool for solving balance laws (this is the focus of a future study).

97 MATHEMATICS AND COMPUTING↗

Prediction of p K a s of Late Transition‐Metal Hydrides via a QM/QM Approach

Three implicit solvation models, the conductor‐like polarizable continuum model (C‐PCM), the conductor‐like screening model (COSMO), and universal implicit solvent model (SMD), combined with a hybrid two layer QM/QM approach (ONIOM), were utilized to calculate the p K a values, using a direct thermodynamic scheme, of a set of Group 10 transition metal (TM) hydrides in acetonitrile. To obtain the optimal combination of quantum methods for ONIOM calculations with implicit solvation models, the influence of factors, such as the choice of density functional and basis set, the atomic radii used to build a cavity in the solvent, and the size of the model system in an ONIOM scheme, was examined. Additionally, the impact of Grimme's empirical dispersion correction and exact exchange was also investigated. The results were calibrated by experimental data. This investigation provides insight about effective models for the prediction of thermodynamic properties of TM‐containing complexes with bulky ligands. © 2019 Wiley Periodicals, Inc.

Patel, Prajay↗

Adaptive immersed isogeometric level-set topology optimization

Here, this paper presents for the first time an adaptive immersed approach for level-set topology optimization using higher-order truncated hierarchical B-spline discretizations for design and state variable fields. Boundaries and interfaces are represented implicitly by the iso-contour of one or multiple level-set functions. An immersed finite element method, the eXtended IsoGeometric Analysis, is used to predict the physical response. The proposed optimization framework affords different adaptively refined higher-order B-spline discretizations for individual design and state variable fields. The increased continuity of higher-order B-spline discretizations together with local refinement enables direct control over the accuracy of the representation of each field while simultaneously reducing computational cost compared to uniformly refined discretizations. A flexible mesh adaptation strategy enables local refinement based on geometric measures or physics-based error indicators. These adaptive discretization and analysis approaches are integrated into gradient-based optimization schemes, evaluating the design sensitivities using the adjoint method. Numerical studies illustrate the features of the proposed framework with static, linear elastic, multi-material, two- and three-dimensional problems. The examples provide insight into the effect of refining the design variable field on the optimization result and the convergence rate of the optimization process. Using coarse higher-order B-spline discretizations for level-set fields promotes the development of smooth designs and suppresses the emergence of small features. Moreover, adaptive mesh refinement for state variable fields results in a reduction of overall computational cost. Higher-order B-spline discretizations are especially interesting when evaluating gradients of state variable fields due to their higher inter-element continuity.

36 MATERIALS SCIENCE↗

Modeling of non-equilibrium phenomena in expanding flows by means of a collisional-radiative model

The effects of non-equilibrium in a quasi-one-dimensional nozzle flow are investigated by means of a collisional-radiative model. The gas undergoing the expansion is an air plasma and consists of atoms, molecules, and free electrons. In the present analysis, the electronic excited states of atomic and molecular species are treated as separate pseudo-species. Rotational and vibrational energy modes are assumed to be populated according to Boltzmann distributions. The coupling between radiation and gas dynamics is accounted for, in simplified manner, by using escape factors. The flow governing equations for the steady quasi-one-dimensional flow are written in conservative form and discretized in space by means of a finite volume method. Steady-state solutions are obtained by using a fully implicit time integration scheme. The analysis of the evolution of the electronic distribution functions reveals a substantial over-population of the high-lying excited levels of atoms and molecules in correspondence of the nozzle exit. The influence of optical thickness is also studied. The results clearly demonstrate that the radiative transitions, within the optically thin approximation, drastically reduce the over-population of high-lying electronic levels.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Transonic viscous and inviscid solutions using a composite velocity procedure

Solutions for transonic viscous and inviscid flows using a composite velocity procedure are presented. The velocity components of the compressible Navier-Stokes equations are written in terms of a multiplicative composite consisting of a viscous or rotational velocity and an inviscid, irrotational, potential like function. For viscous flows, the governing equations are solved using a coupled strongly implicit procedure and the outer inviscid flow corresponds to an irrotational, potential flow. Further investigation of the inviscid flow solution is made so that the correct rotational flow solution may be obtained for the transonic case. The Euler equations are solved for the inviscid flow calculations. Solutions to the full potential equation are recovered unless the axial momentum equation is written in full conservation form.

Gordnier, R. E.↗

Heating and melting of small icy satellites by the decay of Al-26

The effect of radiogenic heating due to Al-26 on the thermal evolution of small icy satellites is studied. The object is to find the extent of internal melting as a function of the satellite radius and of the initial Al-26 abundance. The implicit assumption, based on observations of young stars, is that planet and satellite accretion occurred on a time scale of about 10 to the 6th yr (comparable with the lifetime of Al-26. The icy satellites are modeled as spheres of initially amorphous ice, with chondritic abundances of K-40, Th-232, U-235, and U-238, corresponding to an ice/dust mass ratio of 1. Evolutionary calculations are carried out, spanning 4.5 x 10 to the 9th yr, for different combinations of the two free parameters. Heat transfer by subsolidus convection is neglected for these small satellites. The main conclusion is that the initial Al-26 abundance capable of melting icy bodies of satellite size to a significant extent is more than 10 times lower than that prevailing in the interstellar medium (or that inferred from the Ca-Al rich inclusions of the Allende meteorite, about 7 x 10 to the -7th by mass).

Prialnik, Dina↗

Elliptic grid generation with orthogonality and spacing control on an arbitrary number of boundaries

A procedure for the generation of two and quasi-three-dimensional grids with control of orthogonality and spacing with respect to any and/or all boundaries of the domain is described. The elliptic grid generation equations of Thompson are solved implicitly. Control of the grid behavior is achieved through the introduction of forcing functions terms in the manner of Steger and Sorenson or in a modification of the method of Hilgenstock. The forcing function terms are constructed on the boundaries and propagated into the domain using transfinite Lagrangian bivariate interpolation. An anisotropic transfinite stencil is introduced and is shown to produce excellent grid behavior particularly in the vicinity of corner singularities. Emphasis is placed on the generation of viscous grids and the method is shown to be suited for use in the generation of grids for internal as well as external flow geometries. A FORTRAN program named PISCES has been written to implement the algorithm. Examples of grids for internal and external flows are given that highlight the characteristics and behavior of the algorithm.

White, J. A.↗

Multigrid simulation of asymptotic curved-duct flows using a semi-implicit numerical technique

Asymptotic flows inside curved ducts of rectangular as well as polar cross section are analyzed using the Navier-Stokes equations in terms of the axial velocity and vorticity and the cross-flow stream function. Numerical solutions of the three second-order coupled elliptic partial differential equations governing this flow are obtained efficiently using the coupled alternating-direction implicit (ADI) method as well as the multigrid strongly-implicit (SI) scheme. For the flow configuration studied, the ADI method is found to be more sensitive to the time steps used than is the SI scheme. Use of the multigrid-coupled-strongly-implicit (MG-SI) scheme makes it possible to efficiently obtain fine-grid solutions for configurations having strong secondary flow. It is shown that, for this asymptotic curved-duct flow, the similarity parameter of significance is the Dean's number K rather than the Reynolds number Re. Results are obtained for curved ducts with square cross sections for K up to 900, which here corresponds to Re = 9,000 for this internal flow configuration.

Ghia, K. N.↗

Implicit sampling combined with reduced order modeling for the inversion of vadose zone hydrological data

Bayesian inverse modeling techniques are computationally expensive because many forward simulations are needed when sampling the posterior distribution of the parameters. Here, in this paper, we combine the implicit sampling method and generalized polynomial chaos expansion (gPCE) to significantly reduce the computational cost of performing Bayesian inverse modeling. There are three steps in this approach: (1) find the maximizer of the likelihood function using deterministic approaches; (2) construct a gPCE-based surrogate model using the results from a limited number of forward simulations; and (3) efficiently sample the posterior distribution of the parameters using implicit sampling method. The cost of constructing the gPCE-based surrogate model is further decreased by using sparse Bayesian learning to reduce the number of gPCE coefficients that have to be determined. We demonstrate the approach for a synthetic ponded infiltration experiment simulated with TOUGH2. The surrogate model is highly accurate with mean relative error that is < 0.035% in predicting saturation and < 0.25% in predicting the likelihood function. The posterior distribution of the parameters obtained using our proposed technique is nearly indistinguishable from the results obtained from either an implicit sampling method or a Markov chain Monte Carlo method utilizing the full mode.

54 ENVIRONMENTAL SCIENCES↗

The Dynamics of Some Iterative Implicit Schemes

The global asymptotic nonlinear behavior of some standard iterative procedures in solving nonlinear systems of algebraic equations arising from four implicit linear multistep methods (LMMs) in discretizing 2 x 2 systems of first-order autonomous nonlinear ordinary differential equations is analyzed using the theory of dynamical systems. With the aid of parallel Connection Machines (CM-2 and CM-5), the associated bifurcation diagrams as a function of the time step, and the complex behavior of the associated 'numerical basins of attraction' of these iterative implicit schemes are revealed and compared. Studies showed that all of the four implicit LMMs exhibit a drastic distortion and segmentation but less shrinkage of the basin of attraction of the true solution than standard explicit methods. The numerical basins of attraction of a noniterative implicit procedure mimic more closely the basins of attraction of the differential equations than the iterative implicit procedures for the four implicit LMMs.

Yee, H. C.↗

A study of convective core overshooting as a function of stellar mass based on two-dimensional hydrodynamical simulations

ABSTRACT We perform two-dimensional (2D) numerical simulations of core convection for zero-age main-sequence stars covering a mass range from 3 to 20 M⊙. The simulations are performed with the fully compressible time-implicit code music. We study the efficiency of overshooting, which describes the ballistic process of convective flows crossing a convective boundary, as a function of stellar mass and luminosity. We also study the impact of artificially increasing the stellar luminosity for 3 M⊙ models. The simulations cover hundreds to thousands of convective turnover time-scales. Applying the framework of extreme plume events previously developed for convective envelopes, we derive overshooting lengths as a function of stellar masses. We find that the overshooting distance (dov) scales with the stellar luminosity (L) and the convective core radius (rconv). We derive a scaling law $d_{\rm ov} \propto L^{1/3} r_{\rm conv}^{1/2}$, which is implemented in a one-dimensional stellar evolution code and the resulting stellar models are compared to observations. The scaling predicts values for the overshooting distance that significantly increase with stellar mass, in qualitative agreement with observations. Quantitatively, however, the predicted values are underestimated for masses ≳10 M⊙. Our 2D simulations show the formation of a nearly adiabatic layer just above the Schwarzschild boundary of the convective core, as exhibited in recent three-dimensional simulations of convection. The most luminous models show a growth in size with time of the nearly adiabatic layer. This growth seems to slow down as the upper edge of the nearly adiabatic layer gets closer to the maximum overshooting length and as the simulation time exceeds the typical thermal diffusive time-scale in the overshooting layer.

79 ASTRONOMY AND ASTROPHYSICS↗

Time-discretization of a plasma-neutral MHD model with a semi-implicit leapfrog algorithm

The semi-implicit leapfrog time-discretization is a workhorse algorithm for initial-value MHD codes to bridge between vastly separated time scales. Inclusion of atomic interactions with neutrals breaks the functional structure of the MHD equations that exploited by the leapfrog. In this work, we address how to best integrate atomic physics into the semi-implicit leapfrog. Following the Crank-Nicolson method, one approach is to time-center the atomic interactions in the linear solver and use a Newton method to include the nonlinear contributions. Alternatively, another family of methods are based on operator-splitting the terms associated with the atomic interactions using a Strang-splitting technique. These methods naturally break equations into constituent ODE and PDE parts and preserve the structure exploited by the semi-implicit leapfrog. We study the accuracy and efficiency of these methods through a battery of 0D and 1D cases and show that a second-order-in-time Douglas-Rachford inspired coupling between the ODE and PDE advances is effective in reducing the time-discretization error to be comparable to that of Crank-Nicolson with Newton iteration of the nonlinear terms. Splitting ODE and PDE parts results in independent matrix solves for each field which reduces the computational cost considerably and provides parallelization over species relative to Crank-Nicolson.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗