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At least 217 records · Page 12

Intermediate-state-trapped mutants pinpoint G protein-coupled receptor conformational allostery

Understanding the roles of intermediate states in signaling is pivotal to unraveling the activation processes of G protein-coupled receptors (GPCRs). However, the field is still struggling to define these conformational states with sufficient resolution to study their individual functions. Here, we demonstrate the feasibility of enriching the populations of discrete states via conformation-biased mutants. These mutants adopt distinct distributions among five states that lie along the activation pathway of adenosine A 2A receptor (A 2A R), a class A GPCR. Our study reveals a structurally conserved cation-π lock between transmembrane helix VI (TM6) and Helix8 that regulates cytoplasmic cavity opening as a “gatekeeper” for G protein penetration. A GPCR activation process based on the well-discerned conformational states is thus proposed, allosterically micro-modulated by the cation-π lock and a previously well-defined ionic interaction between TM3 and TM6. Intermediate-state-trapped mutants will also provide useful information in relation to receptor-G protein signal transduction.

59 BASIC BIOLOGICAL SCIENCES↗

Initial Investigation of Coupled Electron-Photon Transport with SCEPTRE and RAPTURE (Rev.1.1)

The SCEPTRE1 code models coupled photon and electron transport in material media using discrete ordinates methods. The code can use different solvers in 1D and 3D in parallel, promising users the ability to run problems that are significant both in physics and computational scale. One capability that is perhaps unique at this time in the NNSA complex is SCEPTRE’s coupled photon– electron transport physics in a discrete ordinates approach. For example, incident x–rays can generate a significant electron population, whose transport can be simulated within the same code. In this context, fully–coupled means that photons can produce electrons and electrons can produce photons; uncoupled or no–coupling means photons do not produce electrons. Partial–coupling, an intermediate option in which photons can produce electrons but electrons do not produce photons, is not considered in the present work. The MCNP code can treat this physics with a Monte Carlo approach. MCNP should be viewed as complementary to SCEPTRE in both computational method (Monte Carlo versus discrete ordinates) as well as data libraries. SCEPTRE and MCNP should provide important checks on each other, especially from complementary modeling frameworks of a S n (discrete ordinates) mesh based method versus Monte Carlo particle based method. In order to learn more about SCEPTRE, and how it might inform engineering work at the Laboratory, we used it to carry out a set of initial studies. This was a series of 1D simulations of photon beams hitting Aluminum slabs. Our studies mainly used SCEPTRE directly, and made little use of the closely associated RAPTURE code (more on this below). The goals of these studies were first, to familiarize ourselves with operating the code, and second, to begin to assess the importance of coupled electron–photon transport. To support these studies, we began to develop a set of scripts to initialize inputs, run tools, process outputs, and plot results. An initial version of these scripts has been committed to the Lightning workflow repository. This memo relates the results of those studies.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Tropical Pacific response to continental ice sheet topography

The last glacial maximum was marked by maximum land ice extent and lowest greenhouse gases concentration during the last ice age. We investigate the effect of glacial continental ice sheet topography on the large-scale tropical ocean–atmosphere climate, in particular the tropical Pacific, in an intermediate complexity coupled model. Increasing the thickness of continental ice sheets causes a southward displaced Pacific Intertropical Convergence Zone (ITCZ) and a strengthening (weakening) of northern (southern) hemisphere winter Hadley cell. The equatorial zonal sea surface temperature gradient weakened with an increased continental ice sheets thickness, the reduction being caused by cooling in the western equatorial Pacific and warming in the eastern equatorial Pacific. The evolution of the tropical climate with changing ice thickness has distinct quasi-linear and nonlinear parts. While the linear part is a direct response to the ice topographic changes, the nonlinear part was a finding of the tropical thermocline adjustment. Our analysis of a fully-coupled transient deglacial simulation strongly indicates the dominant role of ice sheet topography in determining the deglacial evolution of the simulated Pacific climate. The thickness of continental ice sheet, separate from ice albedo effect, has significant impact on the tropical ocean–atmosphere climate in particular with the meridional displacement in the Pacific ITCZ. The altered circulation states seen in the model may aid understanding of the relationship between tropical and high-latitude climate records in glacial-interglacial cycles.

54 ENVIRONMENTAL SCIENCES↗

Benchmarking the multiconfigurational Hartree method by the exact wavefunction of two harmonically trapped bosons with contact interaction

Highlights: • Comparison of exact and numerical single-particle density matrices. • Benchmark for multiconfigurational Hartree. • Convergence for large number of orbitals. We consider two bosons in a one-dimensional harmonic trap, interacting by a contact potential, and compare the exact solution of this problem to a self-consistent numerical solution by using the multiconfigurational time-dependent Hartree (MCTDH) method. We thereby benchmark the predictions of the MCTDH method with a few-body problem that has an analytical solution for the most commonly experimentally realized interaction potential in ultracold quantum gases. It is found that exact ground state energy and first order correlations are accurately reproduced by MCTDH up to the intermediate dimensionless coupling strengths corresponding to typical background scattering lengths of magnetically trapped ultracold dilute Bose gases. For larger couplings, established for example by (a combination of) Feshbach resonances and optical trapping, the MCTDH approach overestimates the depth of the trap-induced correlation dip of first order correlations in position space, as well as overestimates the fragmentation, defined as the average relative occupation of orbitals other than the energetically lowest one. We anticipate that qualitatively similar features in the correlation function may arise for larger particle numbers, paving the way for a quantitative assessment of the accuracy of MCTDH by experiments with ultracold atoms.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Breaking the Brønsted–Evans–Polanyi Relation with Dual-Metal Sites

Linear scaling relationships impose inherent limitations on catalyst activity; the Brønsted−Evans−Polanyi (BEP) relation, which correlates activation and reaction energies, is a prominent example. Here we report a dual-metal site catalyst (DMSC) on ceria that breaks the BEP relation for C−C coupling of methyl intermediates an elementary step in methane coupling to form ethane. The DMSC structure on CeO 2 (111) was discovered by density-functional theory (DFT) structural exploration and confirmed to be stable via ab initio thermodynamics and ab initio molecular dynamics. Homonuclear and heteronuclear DMSCs of Ni, Pd, Pt, Fe, Ru, Os, Co, Rh, and Ir (45 pairs in total) were examined for methyl affinity and methyl−methyl coupling activation energy. We found that many heteronuclear DMSCs break the BEP linear scaling due to a mixed low-affinity/high-affinity coadsorption of the two methyl groups, decoupling the step responsible for the activation energy (E a ) at the low-affinity site from the overall reaction energy (ΔE) determined by both sites. This mechanism of breaking the BEP relationship via the DMSCs offers a catalyst design principle for C−C coupling reactions.

Chen, Yiming [Vanderbilt Univ., Nashville, TN (Uni↗

Crystallization of polarons through charge and spin ordering transitions in 1T-TaS 2

The interaction of electrons with the lattice in metals can lead to reduction of their kinetic energy to the point where they may form heavy, dressed quasiparticles—polarons. Unfortunately, polaronic lattice distortions are difficult to distinguish from more conventional charge- and spin-ordering phenomena at low temperatures. Here we present a study of local symmetry breaking of the lattice structure on the picosecond timescale in the prototype layered dichalcogenide Mott insulator 1T-TaS 2 using X-ray pair-distribution function measurements. We clearly identify symmetry-breaking polaronic lattice distortions at temperatures well above the ordered phases, and record the evolution of broken symmetry states from 915 K to 15 K. The data imply that charge ordering is driven by polaron crystallization into a Wigner crystal-like state, rather than Fermi surface nesting or conventional electron-phonon coupling. At intermediate temperatures the local lattice distortions are found to be consistent with a quantum spin liquid state.

36 MATERIALS SCIENCE↗

Multipolariton control in attosecond transient absorption of autoionizing states

Tunable attosecond transient absorption spectroscopy is an ideal tool for studying and manipulating autoionization dynamics in the continuum. We investigate near-resonant two-photon couplings between the bright 3s –1 4p and dark 3s –1 4f autoionizing states of argon that lead to Autler-Townes-like interactions, forming entangled light-matter states or polaritons. We observe that one-photon couplings with intermediate dark states play an important role in this interaction, leading to the formation of multiple polaritonic branches whose energies exhibit avoided crossings as a function of the dressing-laser frequency. Our experimental measurements and theoretical essential-state simulations show good agreement and reveal how the delay, frequency, and intensity of the dressing pulse govern the properties of autoionizing polariton multiplets. Furthermore, these results demonstrate new pathways for quantum control of autoionizing states with optical fields.

74 ATOMIC AND MOLECULAR PHYSICS↗

Superconductivity, charge density waves, and bipolarons in the Holstein model

The electron-phonon ( e-ph ) interaction remains of great interest in condensed matter physics and plays a vital role in realizing superconductors, charge density waves (CDW), and polarons. We study the two-dimensional Holstein model for e-ph coupling using determinant quantum Monte Carlo across a wide range of its phase diagram as a function of temperature, electron density, dimensionless e-ph coupling strength, and the adiabatic ratio of the phonon frequency to the Fermi energy. We describe the behavior of the CDW correlations, the competition between superconducting and CDW orders and polaron formation, the optimal conditions for superconductivity, and the transition from the weak-coupling regime to the strong-coupling regime. Superconductivity is optimized at intermediate e-ph coupling strength and intermediate electron density, and the superconducting correlations increase monotonically with phonon frequency. The global maximum for superconductivity in the Holstein model occurs at large phonon frequency, the limit where an attractive Hubbard model effectively describes the physics.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Microscopic Derivation of Transition-state Theory for Complex Quantum Systems

The decay of quantum complex systems through a potential barrier is often described with transition-state theory, also known as RRKM theory in chemistry. Here we derive the basic formula for transition-state theory based on a generic Hamiltonian as might be constructed in a configuration-interaction basis. Two reservoirs of random Hamiltonians from Gaussian orthogonal ensembles are coupled to intermediate states representing the transition states at a barrier. Under the condition that the decay of the reservoirs to open channels is large, an analytic formula for reaction rates is derived. Here, the transition states act as independent Breit–Wigner resonances which contribute additively to the total transition probability, as is well known for electronic conductance through resonant tunneling states. It is also found that the transition probability is independent of the decay properties of the states in the second reservoir over a wide range of decay widths.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Z1/3/ contribution to the energy loss of heavy charged particles

The Z1(3) contribution of distant collisions to the average energy loss of heavy charged particles is obtained by extending Bethe's quantum-mechanical calculation to the next highest order in Z1. The second-order Born approximation for the inelastic-collision cross section is simplified by using two major approximations. The infinite summation over terms arising from the coupling to intermediate states of the target atom is approximated with the aid of a parameter and the closure relation. This parameter is proportional to the average excitation energy of the intermediate states as described in the literature. The atomic form factors are simplified through a dipole expansion. Results are obtained in terms of an average excitation energy of the medium. Exemplary results for stopping in Al are presented for estimated values of the average excitation energy of the intermediate states. These results approach the classical and experimental values as the velocity of the penetrating particle increases, agreeing within 20% at beta = 0.3.

Morgan, S. H., Jr.↗

Impact of Satellite Sea Surface Salinity Observations on ENSO Predictions from the GMAO S2S Forecast System

Sea surface salinity (SSS) observations from space allow us to investigate if improved estimates of near-surface density stratification and associated mixing can positively impact seasonal to interannual variability of tropical Pacific Ocean dynamics as well as dynamical ENSO forecasts. For the first part of the presentation, we utilize our intermediate-complexity coupled model. Baseline experiments assimilate satellite sea level (multi-satellite gridded AVISO, 2013), SST (Reynolds et al., 2004), and in situ subsurface temperature and salinity observations (GTSPP NODC, 2006). These baseline experiments are then compared with experiments that additionally assimilate Aquarius (V5.0 Lilly and Lagerloef, 2008) and SMAP (V4.0 Fore et al., 2016) SSS. Twelve-month forecasts are initialized for each month from September 2011 to September 2017. For initialization of the coupled forecast, the positive impact of SSS assimilation is brought about by surface freshening near the eastern edge of the western Pacific warm pool and density changes that lead to shallower mixed layer between 10S-5N. This pattern enhances air/sea interaction and amplifies the equatorial Kelvin wave signal. We find that including satellite SSS significantly improves NINO3.4 sea surface temperature anomaly validation over most forecast lead times. We next assess how different satellite SSS products impact the validation of ENSO forecasts. SMAP V4 reduces the salty bias in the western Pacific and so is an improvement upon SMAP V2 and SMOS V2 (Boutin et al., 2017) has similar validation characteristics as a combination of Aquarius and SMAP V4. Next we shift to present results from the NASA GMAO Sub-seasonal to seasonal (S2S_v2.1) production coupled model (i.e. the same model that contributes ENSO forecasts to the North American Multi-Model Ensemble Experiment). From March to June 2015, the availability of two overlapping satellite SSS instruments, Aquarius and SMAP, allows a unique opportunity to compare and contrast forecasts initialized with the benefit of these two satellite SSS observation types. We assess the impact of satellite sea surface salinity (SSS) observations on dynamical ENSO forecasts for the big 2015 El Nino event. We will present distinct experiments for the overlap period that include 1) freely evolving SSS (i.e. no satellite SSS as the production system), 2) Aquarius, and 3) SMAP initialization. Our results show that using Aquarius slightly improves validation of the reanalysis (including sea level and temperature statistics). Our production system without SSS assimilation generated too warm forecasts for the 2015 El Nino from March initial conditions. Incorporating Aquarius into initialization of the coupled system leads to a deeper, more realistic MLD that acts to damp the downwelling Kelvin signal and slightly cool NINO3.4 SST. With Aquarius the forecasts better match the observed amplitude of the 2015 event. On the other hand, SMAP V2 relaxation generally degrades validation statistics. At forecast initialization, SMAP is much too salty within 10o of the equator, leading to deeper MLD east of 165W. This deeper MLD leads to over-damping of the downwelling signal (i.e. relative upwelling), in turn leading to relatively too cool ENSO forecasts.

Hackert, E.↗

Two-photon excitation cross section in light and intermediate atoms in frozen-core LS-coupling approximation

Using the method of explicit summation over the intermediate states two-photon absorption cross sections in light and intermediate atoms based on the simplistic frozen-core approximation and LS coupling have been formulated. Formulas for the cross section in terms of integrals over radial wave functions are given. Two selection rules, one exact and one approximate, valid within the stated approximations are derived. The formulas are applied to two-photon absorptions in nitrogen, oxygen, and chlorine. In evaluating the radial integrals, for low-lying levels, the Hartree-Fock wave functions, and for high-lying levels, hydrogenic wave functions obtained by the quantum-defect method have been used. A relationship between the cross section and the oscillator strengths is derived.

Omidvar, K.↗

Mechanism for Acetone and Crotonaldehyde Production during Steam Reforming of Ethanol over La 0.7 Sr 0.3 MnO 3–x Perovskite: Evidence for a Shared C4 Aldol Addition Intermediate

Here a mechanistic study was conducted on the catalytic conversion of ethanol over La 0.7 Sr 0.3 MnO 3–x perovskite catalysts in the presence and absence of water. The study sought insights into the path of C–C coupling toward acetone and crotonaldehyde and also into clarifying whether the lack of previous reports of C–C coupling over La 0.7 Sr 0.3 MnO 3–x (100) could be due to a “pressure gap”. Several types of experiments were performed at 400–800 K: flow experiments with a torr range reactant gas flown over La 0.7 Sr 0.3 MnO 3–x powders; ultra-high vacuum experiments with continuous gas exposures to a La 0.7 Sr 0.3 MnO 3–x (100) single-crystal sample; and torr range continuous gas exposures to a La 0.7 Sr 0.3 MnO 3–x (100) single-crystal sample. When ethanol and water were flown over La 0.7 Sr 0.3 MnO 3–x powders at 400–800 K, the products detected were ethene, acetaldehyde, acetone, crotonaldehyde, CO, CO 2 , and H 2 . Acetone was catalytically produced over both the La 0.7 Sr 0.3 MnO 3–x powder and the La 0.7 Sr 0.3 MnO 3–x (100) single-crystal sample at temperatures of 700–800 K when reaction conditions were on the order of 1 Torr of reactant gas and with an excess of water relative to ethanol (1 ethanol/9 water). Isotopic labeling with deuterium was used to gain insights into the C–C coupling reaction mechanism and paths in species with three and four carbons (C 3 and C 4 species). Additionally, steady-state isotopic transient kinetic analysis (SSITKA) experiments + simulations using carbon labeling of the ethanol feed were performed. Three mechanistic paths were considered for the C–C coupling step: the first two paths, A and B, involve coupling between two intermediates which are both in oxygen vacancies; and the third path, C, involves coupling between one intermediate in an oxygen vacancy and one intermediate outside of an oxygen vacancy. The results suggest that the dominant path to the C 3 product, acetone, depends on the conditions. The less active path (attributed to path A or B) occurs at 600–700 K and involves coupling between two irreversibly bound species. The more active path (attributed to path C) requires an excess of water, becomes dominant at 600–800 K, and involves coupling between one irreversibly bound species and one reversibly bound species. Based on these various observations from experiments and simulations, an elementary step is proposed for acetone formation involving a previously unreported C 4 transition state that is formed after aldol addition. Density functional theory calculations were performed based on this hypothesis, and it confirmed that this specific and previously unreported aldol addition path to acetone does exist and that this path consistent with the experimental data. In this path, C–C formation occurs to create a C 4 intermediate that is bound to an oxygen vacancy, then a hydrogen transfer with C–C bond breaking occurs that results in the production of the acetone molecule. The proposed mechanism is also consistent with the experimental observation that acetone formation has a greater than first-order dependence on the water vapor pressure.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Magnetic reconnection in partially ionized gases

Magnetic field lines in a plasma reconnect at a rate scaled by the Alfven speed. In a partially ionized gas there are two natural Alfven speeds: one determined by the ionized mass density alone, which applies when ion-neutral friction is negligible, and one determined by the total mass density, which applies when ion-neutral friction is strong. When the ionization fraction is low, as in a dense molecular cloud, these two speeds differ by several orders of magnitude. Both time-dependent tearing modes and steady-state magnetic reconnection in partially ionized gas are considered, and the regimes in which the charged and neutral components are strongly, intermediately, and weakly coupled are delineated. Molecular clouds are probably in the intermediate regime, while reconnection in solar prominences probably has strong ion-neutral coupling. Reconnection proceeds more rapidly when coupling is not strong.

Zweibel, Ellen G.↗

The Application of Pulse Radiolysis to the Study of Ni(I) Intermediates in Ni-Catalyzed Cross-Coupling Reactions

Here we report the use of pulse radiolysis and spectroelectrochemistry to generate low-valent nickel intermediates relevant to synthetically important Ni-catalyzed cross-coupling reactions and interrogate their reactivities toward comproportionation and oxidative addition processes. Pulse radiolysis provided a direct means to generate singly reduced [(dtbbpy)NiBr], enabling the identification of a rapid Ni(0)/Ni(II) comproportionation process taking place under synthetically relevant electrolysis conditions. Furthermore, this approach also permitted the direct measurement of Ni(I) oxidative addition rates with electronically differentiated aryl iodide electrophiles (k OA = 1.3 × 10 4 –2.4 × 10 5 M –1 s –1 ), an elementary organometallic step often proposed in nickel-catalyzed cross-coupling reactions. Together, these results hold implications for a number of Ni-catalyzed cross-coupling processes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Dissipation coefficients from scalar and fermion quantum field interactions

Dissipation coefficients are calculated in the adiabatic, near thermal equilibrium regime for a large class of renormalizable interaction configurations involving a two-stage mechanism, where a background scalar field is coupled to heavy intermediate scalar or fermion fields which in turn are coupled to light scalar or fermion radiation fields. These interactions are typical of warm inflation microscopic model building. Two perturbative regimes are shown where well defined approximations for the spectral functions apply. One regime is at high temperature, when the masses of both intermediate and radiation fields are less than the temperature scale and where the poles of the spectral functions dominate. The other regime is at low temperature, when the intermediate field masses are much bigger than the temperature and where the low energy and low three-momentum regime dominate the spectral functions. The dissipation coefficients in these two regimes are derived. However, due to resummation issues for the high temperature case, only phenomenological approximate estimates are provided for the dissipation in this regime. In the low temperature case, higher loop contributions are suppressed and so no resummation is necessary. In addition to inflationary cosmology, the application of our results to cosmological phase transitions is also discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

P–P Coupling with and without Terminal Metal–Phosphorus Intermediates

Terminal metal–phosphorus (M–P) complexes are of significant contemporary interest as potential platforms for P-atom transfer (PAT) chemistry. Decarbonylation of metal–phosphaethynolate (M–PCO) complexes has emerged as a general synthetic approach to terminal M–P complexes. M–P complexes that are stabilized by strong M–P multiple bonds are kinetically persistent and isolable. In the absence of strong M–P stabilization, the formation of diphosphorus-bridged complexes (i.e., M–P–P–M species) is often interpreted as evidence for the intermediacy of reactive, unobserved M–P species. Here, we demonstrate that while diphosphorus complexes can arise from reactive M–P species, P–P coupling can also proceed directly from M–PCO species without the intermediacy of M–P complexes. Photochemical decarbonylations of a pincer-supported Ni (II)–PCO complex at 77 K afford a spectroscopically observed terminal Ni–P complex, which is best described as a triplet, Ni(II)-metallophosphinidene with two unpaired electrons localized on the atomic phosphorus ligand. Thermal annealing of this transient Ni–P complex results in rapid dimerization to afford the corresponding P 2 2– -bridged dinickel complex. Unexpectedly, the same P 2 2– -bridged dinickel complex can also be accessed via a thermally promoted process in the absence of light. The analysis of reaction kinetics, isotope-labeling studies, and computational results indicate that the thermal P–P coupling process proceeds via a noncanonical mechanism that avoids terminal M–P intermediates. Together, these results represent the first observation of P–P coupling from characterized terminal M–P species and demonstrate that terminal M–P intermediates are not required to obtain P–P coupling products. These observations provide critical mechanistic understanding of the activation modes relevant to P-atom transfer.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗