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At least 217 records · Page 12

In Situ Transmission Electron Microscopy of Oxide Shell-Induced Pore Formation in (De)lithiated Silicon Nanowires

Silicon (Si) nanowires with a silicon oxide (SiOx) shell were observed in situ during lithiation and delithiation using transmission electron microscopy (TEM). The oxide shell constrains the volume expansion, which prevents full lithiation of the nanowire and retention of a crystalline Si core. Pores form in the amorphized silicon upon the first delithiation. We propose that this is caused by a high barrier to vacancy migration in the SiOx shell, which prevents vacancies formed during delithiation from transporting through the shell to the nanowire surface. These in situ studies demonstrate the importance of the direct observation of structural changes that occur in a material during cycling upon the addition of a coating.

Adkins, Emily R.↗

Chemoselective Methylation of Phenolic Hydroxyl Group Prevents Quinone Methide Formation and Repolymerization During Lignin Depolymerization

Chemoselective blocking of the phenolic hydroxyl (Ar-OH) group by methylation was found to suppress secondary repolymerization and charring during lignin depolymerization. Methylation of Ar-OH prevents formation of reactive quinone methide intermediates, which are partly responsible for undesirable secondary repolymerization reactions. Instead, this structurally modified lignin produces more relatively low molecular weight products from lignin depolymerization compared to unmodified lignin. This result demonstrates that structural modification of lignin is desirable for production of low molecular weight phenolic products. This approach could be directed toward alteration of natural lignification processes to produce biomass more amenable to chemical depolymerization.

Environmental Molecular Sciences Laboratory↗

Formation Process of Particles and Cloud Condensation Nuclei Over the Amazon Rainforest: The Role of Local and Remote New-Particle Formation

Understanding the formation processes of particles and cloud condensation nuclei (CCN) in pristine environments is a major challenge in accurately assessing anthropogenic radiative forcing. Here, using a state-of-the-art model that systematically simulates the chemical processes controlling new-particle formation (NPF) and multi-scale chemical transport, we find that NPF contributes ~90% of the particle number and ~80% of the CCN at 0.5% supersaturation (CCN0.5%) in the pristine Amazon boundary layer during the wet season. The corresponding contributions are only ~30% and ~20% during the dry season because of prevalent biomass burning. In both seasons, about half of the NPF-induced particles and ~85% of the NPF-induced CCN0.5% in the boundary layer originate from the long-range transport of new particles formed hundreds to thousands of kilometers away. Moreover, about 50–65% of the NPF-induced particles and 35–50% of the NPF induced CCN0.5% originate from the downward transport of new particles formed in the free troposphere.

54 ENVIRONMENTAL SCIENCES↗

Formation of a single quasicrystal upon collision of multiple grains

Abstract Quasicrystals exhibit long-range order but lack translational symmetry. When grown as single crystals, they possess distinctive and unusual properties owing to the absence of grain boundaries. Unfortunately, conventional methods such as bulk crystal growth or thin film deposition only allow us to synthesize either polycrystalline quasicrystals or quasicrystals that are at most a few centimeters in size. Here, we reveal through real-time and 3D imaging the formation of a single decagonal quasicrystal arising from a hard collision between multiple growing quasicrystals in an Al-Co-Ni liquid. Through corresponding molecular dynamics simulations, we examine the underlying kinetics of quasicrystal coalescence and investigate the effects of initial misorientation between the growing quasicrystalline grains on the formation of grain boundaries. At small misorientation, coalescence occurs following rigid rotation that is facilitated by phasons. Our joint experimental-computational discovery paves the way toward fabrication of single, large-scale quasicrystals for novel applications.

36 MATERIALS SCIENCE↗

Formation of carbon–nitrogen bonds in carbon monoxide electrolysis

The electroreduction of CO 2 is a promising technology for carbon utilization. Although electrolysis of CO 2 or CO 2 -derived CO can generate important industrial multicarbon feedstocks such as ethylene, ethanol, n-propanol and acetate, most efforts have been devoted to promoting C–C bond formation. Here, we demonstrate that C–N bonds can be formed through co-electrolysis of CO and NH 3 with acetamide selectivity of nearly 40% at industrially relevant reaction rates. Full-solvent quantum mechanical calculations show that acetamide forms through nucleophilic addition of NH 3 to a surface-bound ketene intermediate, a step that is in competition with OH – addition, which leads to acetate. Here, the C–N formation mechanism was successfully extended to a series of amide products through amine nucleophilic attack on the ketene intermediate. This strategy enables us to form carbon–heteroatom bonds through the electroreduction of CO, expanding the scope of products available from CO 2 reduction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

On the formation of nitrogen-substituted polycyclic aromatic hydrocarbons (NPAHs) in circumstellar and interstellar environments

The chemical evolution of extraterrestrial environments leads to the formation of polycyclic aromatic hydrocarbons (PAHs) via gas phase radical mediated aromatization reactions. Here, we review that these de facto barrierless reactions are capable of forming prebiotic molecules such as nitrogen substituted PAHs (NPAHs), which represent the missing link between nitrogen bearing acyclic molecules and prebiotic nucleobases along with vitamins found in meteorites. Crucial routes leading to the incorporation of nitrogen atoms into the aromatic ring have been exposed. Pyridine can be formed from the reaction of abundant vinyl cyanide and its radical or via cyano radicals reacting with 1,3-butadiene. The NPAHs 1,4-dihydro(iso)quinoline and (iso)quinoline can be synthesized through reaction of pyridyl radicals with 1,3-butadiene or sequentially with two acetylene molecules, respectively. The inclusion of nitrogen into an aromatic system and their growth can fill the mechanistic gaps missing leading from acyclic nitrogen-bearing molecules via pyridine to NPAH-type molecules in the interstellar medium.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A combined crossed molecular beams and computational study on the formation of distinct resonantly stabilized C 5 H 3 radicals via chemically activated C 5 H 4 and C 6 H 6 intermediates

The crossed molecular beams technique was utilized to investigate the formation of three isomers of resonantly stabilized (C 5 H 3 ) radicals along with their d 2 -substituted counterparts via the bimolecular reactions of singlet/triplet dicarbon [C 2 (X 1 Σ + g /a 3 Π u )] with methylacetylene [CH 3 CCH(X 1 A 1 )], d 3 -methylacetylene [CD 3 CCH(X 1 A 1 )], and 1-butyne [C 2 H 5 CCH(X 1 A')] at collision energies up to 26 kJ mol -1 via chemically activated singlet/triplet C 5 H 4 /C 5 D 3 H and C 6 H 6 intermediates. These studies exploit a newly developed supersonic dicarbon [C 2 (X 1 Σ + g /a 3 Π u )] beam generated via photolysis of tetrachloroethylene [C 2 Cl 4 (X 1 A g )] by excluding interference from carbon atoms, which represent the dominating (interfering) species in ablation-based dicarbon sources. We assessed the performance of the dicarbon [C 2 (X 1 Σ + g /a 3 Π u )] beam in reactions with methylacetylene [CH 3 CCH(X 1 A 1 )] and d 3 -methylacetylene [CD 3 CCH(X 1 A 1 )]; the investigations demonstrate that the reaction dynamics match previous studies in our laboratory utilizing ablation-based dicarbon sources involving the synthesis of 1,4-pentadiynyl-3 [HCCCHCCH(X 2 B 1 )] and 2,4-pentadiynyl-1 [H 2 CCCCCH(X 2 B 1 )] radicals via hydrogen (deuterium) atom elimination. Considering the C 2 (X 1 Σ + g /a 3 Π u )–1-butyne [C 2 H 5 CCH(X 1 A')] reaction, the hitherto elusive methyl-loss pathway was detected. This channel forms the previously unknown resonantly stabilized penta-1-yn-3,4-dienyl-1 [H 2 CCCHCC(X 2 A)] radical along with the methyl radical [CH 3 (X 2 A 2 ")] and is open exclusively on the triplet surface with an overall reaction energy of -86 ± 10 kJ mol -1 . The preferred reaction pathways proceed first by barrierless addition of triplet dicarbon to the π-electronic system of 1-butyne, either to both acetylenic carbon atoms or to the sterically more accessible carbon atom, to form the methyl-bearing triplet C 6 H 6 intermediates [ i4 1b ] and [ i8 1b ], respectively, with the latter decomposing via a tight exit transition state to penta-1-yn-3,4-dienyl-1 [(H 2 CCCHCC(X 2 A)] plus the methyl radical [CH 3 (X 2 A 2 ")]. The successful unraveling of this methyl-loss channel – through collaborative experimental and computational efforts – underscores the viability of the photolytically generated dicarbon beam as an unprecedented tool to access reaction dynamics underlying the formation of resonantly stabilized free radicals (RSFR) that are vital to molecular mass growth processes that ultimately lead to polycyclic aromatic hydrocarbons (PAHs)

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

LaMer's 1950 model of particle formation: a review and critical analysis of its classical nucleation and fluctuation theory basis, of competing models and mechanisms for phase-changes and particle formation, and then of its application to silver halide, semiconductor, metal, and metal-oxide nanoparticles

Are classical nucleation theory and the 1950 LaMer model of particle formation supported for a wide range of particle formations, or do competing models in the form of chemical reaction mechanisms have better experimental support? Read on to find out.

Whitehead, Christopher B.↗

Weighted-density functionals for cavity formation and dispersion energies in continuum solvation models

Continuum solvation models enable efficient first principles calculations of chemical reactions in solution, but require extensive parametrization and fitting for each solvent and class of solute systems. Here, we examine the assumptions of continuum solvation models in detail and replace empirical terms with physical models in order to construct a minimally-empirical solvation model. Specifically, we derive solvent radii from the nonlocal dielectric response of the solvent from ab initio calculations, construct a closed-form and parameter-free weighted-density approximation for the free energy of the cavity formation, and employ a pair-potential approximation for the dispersion energy. We show that the resulting model with a single solvent-independent parameter: the electron density threshold (n{sub c}), and a single solvent-dependent parameter: the dispersion scale factor (s{sub 6}), reproduces solvation energies of organic molecules in water, chloroform, and carbon tetrachloride with RMS errors of 1.1, 0.6 and 0.5 kcal/mol, respectively. We additionally show that fitting the solvent-dependent s{sub 6} parameter to the solvation energy of a single non-polar molecule does not substantially increase these errors. Parametrization of this model for other solvents, therefore, requires minimal effort and is possible without extensive databases of experimental solvation free energies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mechanisms of material removal and mass transport in focused ion beam nanopore formation

Despite the widespread use of focused ion beam (FIB) processing as a material removal method for applications ranging from electron microscope sample preparation to nanopore processing for DNA sequencing, the basic material removal mechanisms of FIB processing are not well understood. We present the first complete atomistic simulation of high-flux FIB using large-scale parallel molecular dynamics (MD) simulations of nanopore fabrication in freestanding thin films. We focus on the root mechanisms of material removal and rearrangement and describe the role of explosive boiling in forming nanopores. FIB nanopore fabrication is typically understood to occur via sputter erosion. This can be shown to be the case in low flux systems, where individual ion impacts are sufficiently separated in time that they may be considered as independent events. But our detailed MD simulations show that in high flux FIB processing, above a threshold level at which thermal effects become significant, the primary mechanism of material removal changes to a significantly accelerated, thermally dominated process. Under these conditions, the target is heated by the ion beam faster than heat is conducted away by the material, leading quickly to melting, and then continued heating to nearly the material critical temperature. This leads to explosive boiling of the target material with spontaneous bubble formation and coalescence. Mass is rapidly rearranged at the atomistic scale, and material removal occurs orders of magnitude faster than would occur by simple sputtering. While the phenomenology is demonstrated computationally in silicon, it can be expected to occur at lower beam fluxes in other cases where thermal conduction is suppressed due to material properties, geometry, or ambient thermal conditions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Fibrillar dimer formation of islet amyloid polypeptides

Amyloid deposits of human islet amyloid polypeptide (hIAPP), a 37-residue hormone co-produced with insulin, have been implicated in the development of type 2 diabetes. Residues 20 – 29 of hIAPP have been proposed to constitute the amyloidogenic core for the aggregation process, yet the segment is mostly unstructured in the mature fibril, according to solid-state NMR data. Here we use molecular simulations combined with bias-exchange metadynamics to characterize the conformational free energies of hIAPP fibrillar dimer and its derivative, pramlintide. We show that residues 20 – 29 are involved in an intermediate that exhibits transient β-sheets, consistent with recent experimental and simulation results. By comparing the aggregation of hIAPP and pramlintide, we illustrate the effects of proline residues on inhibition of the dimerization of IAPP. The mechanistic insights presented here could be useful for development of therapeutic inhibitors of hIAPP amyloid formation.

59 BASIC BIOLOGICAL SCIENCES↗

Spontaneous formation of suboxidic coordination around Co in ferromagnetic rutile Ti 0.95 Co 0.5 O 2 film

To evaluate local atomic structures around Co in high temperature diluted ferromagnetic semiconductor Co-doped TiO 2 , x-ray fluorescence holography and x-ray absorption fine structure experiments were carried out on rutile paramagnetic Ti 0.99 Co 0.01 O 2 and ferromagnetic Ti 0.95 Co 0.05 O 2 films. The Co atoms in the Ti 0.99 Co 0.01 O 2 simply substituted for Ti sites in the rutile structure, whereas a suboxidic arrangement of CoO 2 Ti 4 formed around Co in the Ti 0.95 Co 0.05 O 2 films. A theoretical investigation based on a series of first-principles calculations indicated the stability of the aggregated suboxidic clusters in the rutile TiO 2 , supporting our hypothesis for the formation of suboxidic coordination in the highly Co-doped sample. As a result, the suboxidic coordination may be the source of strong exchange interaction, resulting in the high Curie temperature in Co-doped TiO 2 .

36 MATERIALS SCIENCE↗

Formation and coarsening of near-surface Ga nanoparticles on SiN{sub x}

We have investigated the formation and coarsening of near-surface Ga nanoparticles (NPs) in SiN{sub x} using Ga{sup +} focused-ion-beam-irradiation of SiN{sub x}, followed by rapid thermal annealing. For surfaces with minimal curvature, diffusive growth is apparent, leading to nearly close packed arrays with NP diameters as small as 3 nm and densities as high as ∼4 × 10{sup 12} cm{sup −2}. The diffusive flux increases with annealing temperature, leading to NP coarsening by Ostwald ripening. For surfaces with increased curvature, diffusion towards the valleys also increases during annealing, leading to Ga NP coalescence and a bi-modal distribution of NP sizes.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗