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At least 217 records · Page 12

DIRECT NUMERICAL SIMULATION OF RADIATION PRESSURE-DRIVEN TURBULENCE AND WINDS IN STAR CLUSTERS AND GALACTIC DISKS

The pressure exerted by the radiation of young stars may be an important feedback mechanism that drives turbulence and winds in forming star clusters and the disks of starburst galaxies. However, there is great uncertainty in how efficiently radiation couples to matter in these high optical depth environments. In particular, it is unclear what levels of turbulence the radiation can produce, and whether the infrared radiation trapped by the dust opacity can give rise to heavily mass-loaded winds. In this paper, we report a series of two-dimensional flux-limited diffusion radiation-hydrodynamics calculations performed with the code ORION in which we drive strong radiation fluxes through columns of dusty matter confined by gravity in order to answer these questions. We consider both systems where the radiation flux is sub-Eddington throughout the gas column, and those where it is super-Eddington at the midplane but sub-Eddington in the atmosphere. In the latter, we find that the radiation-matter interaction gives rise to radiation-driven Rayleigh-Taylor instability, which drives supersonic turbulence at a level sufficient to fully explain the turbulence seen in Galactic protocluster gas clouds, and to make a non-trivial contribution to the turbulence observed in starburst galaxy disks. However, the instability also produces a channel structure in which the radiation-matter interaction is reduced compared to time-steady analytic models because the radiation field is not fully trapped. For astrophysical parameters relevant to forming star clusters and starburst galaxies, we find that this effect reduces the net momentum deposition rate in the dusty gas by a factor of {approx}2-6 compared to simple analytic estimates, and that in steady state the Eddington ratio reaches unity and there are no strong winds. We provide an approximation formula, appropriate for implementation in analytic models and non-radiative simulations, for the force exerted by the infrared radiation field in this regime.

79 ASTRONOMY AND ASTROPHYSICS↗

Late-time acceleration in higher dimensional cosmology

We investigate late time acceleration of the universe in higher dimensional cosmology. The content in the universe is assumed to exert pressure which is different in the normal and extra dimensions. Cosmologically viable solutions are found to exist for simple forms of the equation of state. The parameters of the model are fixed by comparing the predictions with supernovae data. While observations stipulate that the matter exerts almost vanishing pressure in the normal dimensions, we assume that, in the extra dimensions, the equation of state is of the form P∝ρ{sup 1−γ}. For appropriate choice of parameters, a late time acceleration in the universe occurs with q{sub 0} and z{sub tr} being approximately -0.46 and 0.76 respectively.

79 ASTRONOMY AND ASTROPHYSICS↗

Replacing fish oil and astaxanthin by microalgal sources produced different metabolic responses in juvenile rainbow trout fed 2 types of practical diets

Dietary fish oil supplementation provides n-3 long-chained polyunsaturated fatty acids for supporting fish growth and metabolism and enriching fillet with eicosapentaenoic acid (EPA; 20:5n-3) and docosahexaenoic acid (DHA; c22:6n-3). Two experiments were performed as a 3 × 2 factorial arrangement of dietary treatments for 16 wk to determine effects and mechanisms of replacing 0%, 50%, and 100% fish oil with DHA-rich microalgae in combination with synthetic vs. microalgal source of astaxanthin in plant protein meal (PM)- or fishmeal (FM)- based diets for juvenile rainbow trout (Oncorhynchus mykiss). Fish (22 ± 0.26 g) were stocked at 17/tank and 3 tanks/diet. The 100% fish oil replacement impaired (P < 0.0001) growth performance, dietary protein and energy utilization, body indices, and tissue accumulation of DHA and EPA in both diet series. Here, the impairments were associated (P < 0.05) with upregulation of hepatic gene expression related to growth (ghr1and igf1) and biosynthesis of DHA and EPA (fads6 and evol5) that was more dramatic in the FM than PM diet-fed fish, and more pronounced on tissue EPA than DHA concentrations. The source of astaxanthin exerted interaction effects with the fish oil replacement on several measures including muscle total cholesterol concentrations. In conclusion, replacing fish oil by the DHA-rich microalgae produced more negative metabolic responses than the substitution of synthetic astaxanthin by the microalgal source in juvenile rainbow trout fed 2 types of practical diets.

59 BASIC BIOLOGICAL SCIENCES↗

Engineered unique elastic modes at a BaTiO 3 /2x1-Ge(001) interface

Here, the strong interaction at an interface between a substrate and thin film leads to epitaxy and provides a means of inducing structural changes in the epitaxial film. These induced material phases often exhibit technologically relevant electronic, magnetic, and functional properties. The 2×1 surface of a Ge(001) substrate applies a unique type of epitaxial constraint on thin films of the perovskite oxide BaTiO 3 where a change in bonding and symmetry at the interface leads to a non-bulk-like crystal structure of the BaTiO 3 . While the complex crystal structure is predicted using first-principles theory, it is further shown that the details of the structure are a consequence of hidden phases found in the bulk elastic response of the BaTiO 3 induced by the symmetry of forces exerted by the germanium substrate.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Enabling a Decentralized Smart Grid Using Autonomous Edge Control Devices

As a large number of distributed devices are connected to the modern smart grid, the traditional centralized connectivity models fail to provide economic value. These models have relied on sending data to the cloud for processing and receiving commands to exert control actions, resulting in an ‘on-demand system’ with high bandwidth, low latency and an overload of data on the cloud. For realizing a decentralized system, there is a strong need to embed intelligence at the ‘edge of the network’. These intelligent devices, capable of sensing, local data processing and exerting control actions, report only actionable information to the cloud, acting as an edge control node. The system can then function autonomously, without constant cloud inputs, tolerating longer delays in communication, making the overall system ultra-low cost. The Global Asset Monitoring, Management and Analytics (GAMMA) Platform is a novel ultralow- cost, secure platform that operates through a Bluetooth based delay tolerant network. It relies on so-called ‘data mules’ to bridge the last mile connectivity gap in an inherently secure way. Due to this model, the platform requires no in-country certifications, does not rely on a dedicated backhaul technology and is immune to technology migration. This architecture also addresses some gaps identified in traditional IoT-based solutions in remote areas and sparse connectivity. A functional unit of the edge computing node has been built, taking into account various constraints like costs, customizations, data storage, cybersecurity and power management. Here, the platform has been built, deployed and has demonstrated distributed smart grid applications like power quality sensing, automated metering infrastructure and utility asset monitoring.

42 ENGINEERING↗

Disturbance legacies and climate jointly drive tree growth and mortality in an intensively studied boreal forest

How will regional growth and mortality change with even relatively small climate shifts, even independent of catastrophic disturbances? This question is particularly acute for the North American boreal forest, which is carbon-dense and subject The goals of this study were to combine dendrochronological sampling, inventory records, and machine-learning algorithms to understand how tree growth and death have changed at one highly studied site (Northern Old Black Spruce, NOBS) in the central Canadian boreal forest. Over the 1999-2012 inventory period, mean DBH increased even as stand density and basal area declined significantly from 41.3 to 37.5 m2 ha-1. Tree mortality averaged 1.4±0.6% yr-1, with most mortality occurring in medium-sized trees. A combined tree ring chronology constructed from 2001, 2004, and 2012 sampling showed several periods of extreme growth depression, with increased mortality lagging depressed growth by ~5 years. Minimum and maximum air temperatures exerted a negative influence on tree growth, while precipitation and climate moisture index had a positive effect; both current- and previous-year data exerted significant effects. Models based on these variables explained 23-44% of the ring-width variability. There have been at least one, and probably two, significant recruitment episodes since stand initiation, and we infer that past climate extremes led to significant NOBS mortality still visible in the current forest structure. These results imply that a combination of successional and demographic processes, along with mortality driven by abiotic factors, continue to affect the stand, with significant implications for our understanding of previous work at NOBS and the sustainable management of regional forests.

black spruce↗

Tunable intrinsic strain in two-dimensional transition metal electrocatalysts

Tuning surface strain is a powerful strategy for tailoring the reactivity of metal catalysts. Traditionally, surface strain is imposed by external stress from a heterogeneous substrate, but the effect is often obscured by interfacial reconstructions and nanocatalyst geometries. Here, we report on a strategy to resolve these problems by exploiting intrinsic surface stresses in two-dimensional transition metal nanosheets. Density functional theory calculations indicate that attractive interactions between surface atoms lead to tensile surface stresses that exert a pressure on the order of 10 5 atmospheres on the surface atoms and impart up to 10% compressive strain, with the exact magnitude inversely proportional to the nanosheet thickness. Atomic-level control of thickness thus enables generation and fine-tuning of intrinsic strain to optimize catalytic reactivity, which was confirmed experimentally on Pd(110) nanosheets for the oxygen reduction and hydrogen evolution reactions, with activity enhancements that were more than an order of magnitude greater than those of their nanoparticle counterparts.

Wang, Lei (ORCID:0000000204434231)↗

Interfacial actin protrusions mechanically enhance killing by cytotoxic T cells

Cytotoxic T lymphocytes (CTLs) kill by forming immunological synapses with target cells and secreting toxic proteases and the pore-forming protein perforin into the intercellular space. Immunological synapses are highly dynamic structures that boost perforin activity by applying mechanical force against the target cell. Here, we used high-resolution imaging and microfabrication to investigate how CTLs exert synaptic forces and coordinate their mechanical output with perforin secretion. Using micropatterned stimulatory substrates that enable synapse growth in three dimensions, we found that perforin release occurs at the base of actin-rich protrusions that extend from central and intermediate locations within the synapse. These protrusions, which depended on the cytoskeletal regulator WASP and the Arp2/3 actin nucleation complex, were required for synaptic force exertion and efficient killing. They also mediated physical deformation of the target cell surface during CTL–target cell interactions. Here our results reveal the mechanical basis of cellular cytotoxicity and highlight the functional importance of dynamic, three-dimensional architecture in immune cell-cell interfaces.

36 MATERIALS SCIENCE↗

Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence

Streptomyces bacteria are renowned both for their antibiotic production capabilities and for their cryptic metabolic potential. Their metabolic repertoire is subject to stringent genetic control, with many of the associated biosynthetic gene clusters being repressed by the conserved nucleoid-associated protein Lsr2. In an effort to stimulate new antibiotic production in wild Streptomyces isolates, we leveraged the activity of an Lsr2 knockdown construct and successfully enhanced antibiotic production in the wild Streptomyces isolate WAC07094. We determined that this new activity stemmed from increased levels of the angucycline-like family member saquayamycin. Saquayamycin has both antibiotic and anti-cancer activities, and intriguingly, beyond Lsr2-mediated repression, we found saquayamycin production was also suppressed at high density on solid or in liquid growth media; its levels were greatest in low-density cultures. This density-dependent control was exerted at the level of the cluster-situated regulatory gene sqnR and was mediated in part through the activity of the PhoRP two-component regulatory system, where deleting phoRP led to both constitutive antibiotic production and sqnR expression. This suggests that PhoP functions to repress the expression of sqnR at high cell density. We further discovered that magnesium supplementation could alleviate this density dependence, although its action was independent of PhoP. Finally, we revealed that the nitrogen-responsive regulators GlnR and AfsQ1 could relieve the repression exerted by Lsr2 and PhoP. Intriguingly, we found that this low density-dependent production of saquayamycin was not unique to WAC07094; saquayamycin production by another wild isolate also exhibited low-density activation, suggesting that this spatial control may serve an important ecological function in their native environments.

59 BASIC BIOLOGICAL SCIENCES↗

Predicting fatal heat and humidity using the heat index model

A unique wet-bulb temperature of 35°C is often used as the threshold for human survivability, but recent experiments have shown that a person’s core temperature starts to rise at a wide range of critical wet-bulb temperatures. Here, it is shown that the model underlying the heat index correctly predicts those critical wet-bulb temperatures, explaining 95% of the variance in the values observed in laboratory heat-stress experiments. This is the first time the heat-index model has been validated against physiological data from laboratory experiments. For light and moderate exertion in an indoor setting, the heat index model predicts that the critical wet-bulb temperature ranges from 20 to 32°C, depending on the relative humidity, consistent with experimental results. Furthermore, for the same setting and exertion, the heat index model predicts fatal wet-bulb temperatures ranging from 24 to 37°C. Recent experiments have identified the critical combinations of heat and humidity, in an indoor setting, above which an individual is unable to maintain a standard core temperature, indicating severe heat stress. It is shown here why this state of severe heat stress cannot be predicted using the wet-bulb temperature. Instead, it is shown that the recently extended heat index model can explain nearly all of the variance in the observed critical combinations of temperature and humidity, and can be used to calculate fatal combinations.

59 BASIC BIOLOGICAL SCIENCES↗

Visualization of Iron‐Binding Micelles in Acidic Recombinant Biomineralization Protein, MamC

Biological macromolecules are utilized in low‐temperature synthetic methods to exert precise control over nanoparticle nucleation and placement. They enable low‐temperature formation of a variety of functional nanostructured materials with properties often not achieved via conventional synthetic techniques. Here we report on the in situ visualization of a novel acidic bacterial recombinant protein, MamC, commonly present in the magnetosome membrane of several magnetotactic bacteria, including Magnetococcus marinus , strain MC‐1. Our findings provide an insight into the self‐assembly of MamC and point to formation of the extended protein surface, which is assumed to play an important role in the formation of biotemplated inorganic nanoparticles. The self‐organization of MamC is compared to the behavior of another acidic recombinant iron‐binding protein, Mms6.

Kashyap, Sanjay↗

Statistical mechanics and pressure of composite multimoded weakly nonlinear optical systems

Statistical mechanics can provide a versatile theoretical framework for investigating the collective dynamics of weakly nonlinear-wave settings that can be utterly complex to describe otherwise. In optics, composite systems arise due to interactions between different frequencies and polarizations. The purpose of this work is to develop a thermodynamic theory that takes into account the synergistic action of multiple components. We find that the type of the nonlinearity involved can have important implications in the thermalization process and, hence, can lead to different thermal equilibrium conditions. Importantly, we derive closed-form expressions for the actual optomechanical pressure that is exerted on the system. In particular, the total optomechanical pressure is the sum of the partial pressures due to each component. Our results can be applied to a variety of weakly nonlinear optical settings such as multimode fibers, bulk waveguides, photonic lattices, and coupled microresonators. We present two specific examples, where two colors interact in a one-waveguide array with either a cubic or quadratic nonlinearity.

Efremidis, Nikolaos K. (ORCID:0000000298300268)↗

Recombination enhances HIV-1 envelope diversity by facilitating the survival of latent genomic fragments in the plasma virus population

HIV-1 is subject to immune pressure exerted by the host, giving variants that escape the immune response an advantage. Virus released from activated latent cells competes against variants that have continually evolved and adapted to host immune pressure. Nevertheless, there is increasing evidence that virus displaying a signal of latency survives in patient plasma despite having reduced fitness due to long-term immune memory. We investigated the survival of virus with latent envelope genomic fragments by simulating within-host HIV-1 sequence evolution and the cycling of viral lineages in and out of the latent reservoir. Our model incorporates a detailed mutation process including nucleotide substitution, recombination, latent reservoir dynamics, diversifying selection pressure driven by the immune response, and purifying selection pressure asserted by deleterious mutations. We evaluated the ability of our model to capture sequence evolution in vivo by comparing our simulated sequences to HIV-1 envelope sequence data from 16 HIV-infected untreated patients. Empirical sequence divergence and diversity measures were qualitatively and quantitatively similar to those of our simulated HIV-1 populations, suggesting that our model invokes realistic trends of HIV-1 genetic evolution. Moreover, reconstructed phylogenies of simulated and patient HIV-1 populations showed similar topological structures. Our simulation results suggest that recombination is a key mechanism facilitating the persistence of virus with latent envelope genomic fragments in the productively infected cell population. Recombination increased the survival probability of latent virus forms approximately 13-fold. Prevalence of virus with latent fragments in productively infected cells was observed in only 2% of simulations when we ignored recombination, while the proportion increased to 27% of simulations when we allowed recombination. We also found that the selection pressures exerted by different fitness landscapes influenced the shape of phylogenies, diversity trends, and survival of virus with latent genomic fragments. Furthermore, our model predicts that the persistence of latent genomic fragments from multiple different ancestral origins increases sequence diversity in plasma for reasonable fitness landscapes.

59 BASIC BIOLOGICAL SCIENCES↗

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

Dark-grown seedlings exhibit skotomorphogenic development. Genetic and molecular evidence indicates that a quartet of Arabidopsis Phytochrome (phy)-Interacting bHLH Factors (PIF1, 3, 4, and 5) are critically necessary to maintaining this developmental state and that light activation of phy induces a switch to photomorphogenic development by inducing rapid degradation of the PIFs. Here, using integrated ChIP–seq and RNA–seq analyses, we have identified genes that are direct targets of PIF3 transcriptional regulation, exerted by sequence-specific binding to G-box (CACGTG) or PBE-box (CACATG) motifs in the target promoters genome-wide. In addition, expression analysis of selected genes in this set, in all triple pif-mutant combinations, provides evidence that the PIF quartet members collaborate to generate an expression pattern that is the product of a mosaic of differential transcriptional responsiveness of individual genes to the different PIFs and of differential regulatory activity of individual PIFs toward the different genes. Together with prior evidence that all four PIFs can bind to G-boxes, the data suggest that this collective activity may be exerted via shared occupancy of binding sites in target promoters.

59 BASIC BIOLOGICAL SCIENCES↗

Rare Plant Monitoring and Restoration at the Lawrence Livermore National Laboratory Experimental Test Site, Site 300, Project Progress Report 2007 through 2011

The large-flowered fiddleneck, Amsinckia grandiflora (A. GRAY) GREENE (Boraginaceae), is a rare annual forb native to the California winter annual grasslands. Amsinckia grandiflora germinates with the onset of fall or early winter rain, grows vegetatively throughout the winter, flowers in the early spring, and sets seeds and dies prior to the summer drought, a pattern observed in most of the herbaceous species of the California winter annual grasslands (Heady, 1990). Of the fifteen species in the genus recognized by Ray and Chisaki (1957a, 1957b), A. grandiflora is one of four heterostylous species with highly restricted distributions that are likely ancestors of the weedy, widespread, and homostylous congeners (Ray and Chisaki, 1957a, 1957b; Shoen et al., 1997). As a heterostylous species, A. grandiflora produces pin and thrum flower forms (also known as morphs) (Figure A1). Each individual plant has only one type of flower. An exerted stigma and anthers within the corolla tube characterize pin flowers. Thrum flowers have the opposing morphology, with the stigma within the corolla tube and exerted anthers. Characteristic of the genus, each flower morph has four ovaries at the base of the style, each of which matures into a seed, known as a nutlet. Thus, each flower can produce a maximum of four nutlets.

54 ENVIRONMENTAL SCIENCES↗

Collaborative Research: Fundamental studies of plasma control using surface embedded electronic devices

The proposed study will investigate the effect of active electron injection of from electrode surfaces To the best of our knowledge, no such a study has ever been attempted even though it could lead to the formation of whole new classes of plasma based devices and systems. We are motivated by recent articles and simple theory which gives strong reason to believe that embedded electronic devices can be used to exert control over the SEE coefficient of semiconductor surfaces (and maybe other surface types as well). Furthermore, the research will explore how such sub-surface electronic devices can best be used to exert control over an associated plasma.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Measurement and Analysis of Extreme Wave and Ice Actions in the Great Lakes for Offshore Wind Platform Design

This project, funded by the Department of Energy as DE-EE0005376, successfully measured wind-driven lake ice forces on an offshore structure in Lake Superior through one of the coldest winters in recent history. While offshore regions of the Great Lakes offer promising opportunities for harvesting wind energy, these massive bodies of freshwater also offer extreme and unique challenges. Among these challenges is the need to anticipate forces exerted on offshore structures by lake ice. The parameters of interest include the frequency, extent, and movement of lake ice, parameters that are routinely monitored via satellite, and ice thickness, a parameter that has been monitored at discrete locations over many years and is routinely modeled. Essential relationships for these data to be of use in the design of offshore structures and the primary objective of this project are measurements of maximum forces that lake ice of known thicknesses might exert on an offshore structure.

17 WIND ENERGY↗

Advanced Coolant Enclosure Solutions for Micro Gas Cooled Reactors with Enhanced Efficiency and Safety

Argonne’s advanced high-pressure, high-temperature gas enclosures solutions were developed and tested for Light Water Reactor (LWR) fuel applications wherein pressure, temperature, fuel and working fluid are substantially different when compared to the operating conditions typical of gas cooled reactors (GCR). For LWR applications the coolant sleeve pressure exerted on the inner and outer walls of the sleeve may be equalized by pressurizing the fuel rod (e.g., with helium gas) to compensate for the coolant high pressure exerted on the outer walls of the sleeve. This results in a lower differential pressure. Micro-GCRs are reactor systems operated at elevated temperatures and pressure with gas as a working fluid. HolosGen’s Holos-Quad represent a type of Micro-GCR wherein the core is sleeved to segregate the fuel and other components from the working fluid.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗