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215 records · Page 12

A Meta-Analysis of the Protein Components in Rattlesnake Venom

The specificity and potency of venom components give them a unique advantage in developing various pharmaceutical drugs. Though venom is a cocktail of proteins, rarely are the synergy and association between various venom components studied. Understanding the relationship between various components of venom is critical in medical research. Using meta-analysis, we observed underlying patterns and associations in the appearance of the toxin families. For Crotalus, Dis has the most associations with the following toxins: PDE; BPP; CRL; CRiSP; LAAO; SVMP P-I and LAAO; SVMP P-III and LAAO. In Sistrurus venom, CTL and NGF have the most associations. These associations can predict the presence of proteins in novel venom and understand synergies between venom components for enhanced bioactivity. Using this approach, the need to revisit the classification of proteins as major components or minor components is highlighted. The revised classification of venom components is based on ubiquity, bioactivity, the number of associations, and synergies. The revised classification can be expected to trigger increased research on venom components, such as NGF, which have high biomedical significance. Using hierarchical clustering, we observed that the genera’s venom compositions were similar, based on functional characteristics rather than phylogenetic relationships.

60 APPLIED LIFE SCIENCES↗

Suspended and Restored Activities of a Nearby Supermassive Black Hole

The discovery of spectral type transition of active galactic nuclei (AGNs), the so-called “changing-look” (CL) phenomenon, challenges the widely accepted AGN paradigm, not only in the orientation-based unified model, but also in the standard disk model. In past decades, only a couple of nearby repeat changing-look active galactic nuclei (CL-AGNs) have been identified. Here we report spectroscopic observations of UGC 3223 over the course of 18 yr, from 2001 onwards. Combining the spectrum taken in 1987 by Stirpe, we have witnessed its type transitions from 1.5→2.0→1.8 over 32 yr, and captured a long-lived (at least 10 yr) thorough “turn-off” state with a spectrum typical of a Seyfert 2 galaxy. The long-term thorough turn-off state probably suggests a once-dormant and an awakening central engine in UGC 3223. We argue that the (dis)appearance of the broad Balmer emission lines can be explained by the disk–wind broad-line region model given the evolution of the calculated Eddington ratio of accretion of the supermassive black hole.

79 ASTRONOMY AND ASTROPHYSICS↗

A Decision Support Tool for Planning Neighborhood-Scale Deployment of Low-Speed Shared Automated Shuttles

Increasing interest and investment in connected, automated, and electric vehicles, and mobility-as-a-service concepts are paving the way for the next major shift in transportation through automated and shared mobility. The initial excitement towards rapid deployment and adoption of automated vehicles has subsided, and low-speed automated shuttles are emerging as a more pragmatic pathway for introducing automated mobility in geo-fenced districts. Such shuttles hold the promise to provide a viable alternative for serving short trips in urban districts with high travel densities. As interest in low-speed automated shuttle systems (to improve urban mobility) increases, the need for tools that can inform communities regarding benefits or dis-benefits of automated shuttle deployments is imminent. However, most of the existing transportation planning and simulation tools are not capable of handling emerging shared automated mobility options. This presentation presents a microscopic simulation toolkit that can be used by cities and communities to plan for the deployment of low-speed automated shuttles systems, as well as other shared mobility options. Labeled as the Automated Mobility District (AMD) modeling and simulation toolkit, the proposed decision support tool can help cities evaluate the mobility and sustainability impacts of deploying shared automated vehicles in geofenced regions. This paper presents a description of the toolkit, as well as a sample scenario analysis for the deployment of low-speed automated shuttles in Greenville, South Carolina. Results from the scenario study demonstrate the effectiveness of the proposed simulation toolkit in planning for advanced mobility systems.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Modeling and Simulation of Automated Mobility Districts

Increasing interest and investment in connected, automated, and electric vehicles (CAEVs), and mobility-as-a-service (MaaS) concepts are paving the way for the next major shift in transportation through automated and shared mobility. The initial excitement towards rapid deployment and adoption of automated vehicles has subsided, and low-speed automated shuttles are emerging as a more pragmatic pathway for introducing automated mobility in geo-fenced districts. Such shuttles hold the promise to provide a viable alternative for serving short trips in urban districts with high travel densities. As interest in low-speed automated shuttle systems (to improve urban mobility) increases, the need for tools that can inform communities regarding benefits or dis-benefits of automated shuttle deployments is imminent. However, most of the existing transportation planning and simulation tools are not capable of handling emerging shared automated mobility options. This presentation provide the details of a microscopic simulation toolkit that can be used by cities and communities to plan for the deployment of low-speed automated shuttles systems, as well as other shared mobility options. Labeled as Automated Mobility District (AMD) modeling and simulation toolkit, the proposed decision support tool intends to help cities evaluate the mobility and sustainability impacts of deploying shared automated vehicles in geofenced regions.The AMD modeling and simulation task is funded through DOE's SMART Mobility Consortium. This presentation outlines the progress of the AMD modeling and simulation task in FY19, including case studies conducted in Greenville, SC, and Austin, TX.

47 OTHER INSTRUMENTATION↗

Exploring QCD Factorization at Moderate Energy Scales

Asymptotic freedom in QCD facilitates the use of partonic degrees of freedom over short distances, but physical processes are sensitive to a wide range of scales. Thus, it is necessary in QCD calculations to utilize a factorization scheme to separate a process into perturbative and non-perturbative factors. This separation relies on an assumption that one energy scale is infinitely larger than the other scales involved in the process. However, much experimental research in areas such as nucleon structure and quark-hadron duality occur at more moderate energy scales where that basic assumption may not be true but perturbative calculations should still be useful. Thus, an exploration of the limits of factorization at more moderate energy scales is needed. This dissertation examines various aspects of factorization at these energy scales first by applying the necessary approximations to a simple model where exact calculations are possible and so the effects of these approximations can be quantified. This is followed by examining areas where corrections are known to be needed. First is an exploration of target mass corrections (TMCs) in the case of deep inelastic scattering (DIS), including a discussion of what large corrections imply about the target structure. Second, is a general examination of PDFs and FFs at moderate scales. Third, I will discuss how this fits into the long-term effort to study the transition between small transverse momentum (generated non-perturbatively) and large transverse momentum (generated in the hard process)

Moffat, Eric↗

Containerization in ATLAS Software Development and Data Production

The ATLAS experiment's software production and distribution on the grid benefits from a semi-automated infrastructure that provides up-to-date information about software usability and availability through the CVMFS dis-tribution service for all relevant systems. The software development process uses a Continuous Integration pipeline involving testing, validation, packag-ing and installation steps. For opportunistic sites that can not access CVMFS, containerized releases are needed. These standalone containers are currently created manually to support Monte-Carlo data production at such sites. In this paper we will describe an automated procedure for the containerization of AT-LAS software releases in the existing software development infrastructure, its motivation, integration and testing in the distributed computing system.

97 MATHEMATICS AND COMPUTING↗

HydrogenAR: Interactive Data-Driven Presentation of Dispenser Reliability: Preprint

When delivering presentations to a co-located audience, we typically use slides with text and 2D graphics to complement the spoken narrative. Though presentations have largely been explored on 2D media, augmented reality (AR) allows presentation designers to add data and augmentations to existing physical infrastructure on display. This could provide a more engaging experience to the audience and support comprehension. With HydrogenAR, we present a novel application that leverages the benefits of data-driven storytelling with those of AR to explain the unique challenges of hydrogen dis- penser reliability. Utilizing physical props, situated data, and virtual augmentations and animations, HydrogenAR serves as a unique presentation tool, particularly critical for stakeholders, tour groups, and VIPs. HydrogenAR is a product of multiple collaborative de- sign iterations with a local Hydrogen Fuel research team and is evaluated through interviews with team members and a user study with end-users to evaluate the usability and quality of the interactive AR experience. Through this work, we provide design considera- tions for AR data-driven presentations and discuss how AR could be used for innovative content delivery beyond traditional slide-based presentations.

augmented reality↗

Deep Inelastic Lepton-Nucleus Scattering

I have worked at MINERvA for almost four years and I am involved in theanalysis of antineutrino interactions with the nuclear targets in the DIS region. Iam one of the first Ph.D. students to use higher statistics antineutrino data obtainedby the MINERvA detector. Before joining MINERvA, I have also workedat my home institution(Aligarh Muslim University, India) for almost three yearson the theoretical understanding of neutrino-nucleon and neutrino-nucleus scatteringcross sections. These studies were more confined to quasielastic scatteringprocesses. Therefore, my work is divided into two parts. First I will introduce thework which I am performing during my stay at the Fermilab and will be discussedin Chapters 2-6 and then I will introduce the theoretical work, which will bediscussed in Chapters 7-10. Finally I will conclude my findings in Chapter 11.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

E-Beam Irradiation Beamline at Jefferson Lab for Wastewater Treatment

Electron beam (e-beam) irradiation is an advanced method for removing the emerging organic contaminants in wastewater, such as 1,4-dioxane, and per- and polyfluoroalkyl sub?stances (PFAS), which have the potential to be regulated in the near future but are difficult to degrade by conventional treatment methods. This dissertation was based on a collabo?rating study between Jefferson Lab (Jlab) and Hampton Roads Sanitation District (HRSD) to evaluate the impacts of e-beam irradiation on the degradation of 1,4-dioxane and PFAS. It presents the detailed design of an e-beam irradiation beamline, the beamline simulation using general particle tracer (GPT), the installation, and the successful commissioning. The beamline is an extended section to the Upgraded Injector Test Facility (UITF) at Jlab, which is a continuous wave (CW), superconducting radio frequency (SRF) linear accelerator with an energy up to 10 MeV. To let the sample volume receive a significant and uniform dose distribution, the sample target was designed by investigating the dose distribution simulated with a Monte-Carlo code, FLUKA. The optimized beam energy was 8 MeV and the beam current for irradiation was ? 100 nA. With the use of a solenoid and a raster, the electron beam was expanded to the optimized size, 1? ? 15 mm, at the sample target. This dis?sertation also presents the irradiation experiments for 64 1,4-dioxane samples and 48 PFAS samples in different water matrices, including real wastewater, which were prepared and an?alyzed by HRSD. The absorbed doses of samples were obtained by designing a new method that combines the FLUKA simulation and dose mapping experiments. The irradiation re?sults showed that around 95% of 1,4-dioxane was removed at a low dose of ? 2 kGy, and PFAS was possibly removed at a lower dose compared to similar research. This work is a first implementation of SRF technology for wastewater irradiation. It pro?vides a valuable new research platform for wastewater remediation. This will be in support of future industrial applications of advanced SRF technologies and better understanding of the effect of e-beam irradiation on wastewater or water treatment.

Li, Xi↗

Accelerating Application Bulk Synchronous Writes in HPC Environments

High-bandwidth storage tiers are becoming more common for their capability to absorb high-rate, bursty I/Os. Notably, the designs of these fast storage tiers differ from system to system. The variation of these layers and non-uniform methods of access can pose chal- lenges for applications seeking to run at multiple HPC facilities. Therefore, in this work, we present Spectral, a rapid-output ab- straction library to accelerate application, bulk-synchronous writes on HPC systems. We design Spectral to enable applications to use high-bandwidth storage, such as node-local storage and dis- tributed, write-caches (e.g., burst buffers) transparently without requiring modifications to the application or file system source code. The key idea is to allow applications to spend most of the time performing productive work and to not require any source code changes for maximum portability on different HPC archi- tectures. Spectral internally re-routes write-only files through available, high-performance I/O resources before ultimately mi- grating them to the shared global parallel file system. For instance, on Summit, Spectral transparently places application outputs on node-local storage and then utilizes asynchronous migration to the center-wide GPFS file system. We evaluate Spectral on the Summit HPC system (1024 nodes) using the IOR benchmark and real scientific applications. Spectral shows linear performance scaling, improving application write performance by over an order of magnitude when compared to GPFS.

Khan, Awais↗

First Measurement of the Isospin-Dependence of Nuclear Structure Functions at 12 GeV Jefferson Lab

The structure functions of protons and neutrons provide crucial insight into how the strong nuclear force, as described by Quantum Chromodynamics (QCD), manifests at everyday energies, allowing us to better understand precisely how quarks and gluons interact to form the basic building blocks of almost all visible mass in our universe. Despite more than 40 years of experimental and theoretical effort, the EMC effect – the observation that nuclear structure functions appear to be modified from those of free nucleons – is still not fully understood. One open question that remains is whether or not the modification of quark distributions is the same for all quark flavors. Determining the flavor (isospin) dependence of the EMC effect, which is predicted by several models, is essential for coming to a complete understanding of how QCD manifests in nuclei. To this end, inclusive electron Deep Inelastic Scattering (DIS) from nuclei with approximately constant atomic mass number A and variable proton-to-neutron ratio N/Z was measured in Jefferson Lab experiment E12-10-008 to look for isospin-dependent modification of nuclear structure functions. The preliminary EMC ratios presented here cover a kinematic range of 2.8 < Q2 < 8.1 GeV2 and 0.18 < xBj < 1.0. The size of the EMC effect in these nuclei is extracted by calculating the slope of the EMC ratio as a function of Bjorken x (xBj ) over the ranges 0.3 < xBj < 0.6 and 0.3 < xBj < 0.7; these slopes then are compared with existing world data. Our preliminary results do not appear to indicate significant isospin-dependence of the EMC effect, though a more careful study is needed once all results are confirmed.

Cotton, Cameron William [Univ. of Virginia, Charlo↗

Measurement of the Triple-Differential Cross Section of Muon Neutrino Charged Current Interactions with Low Hadronic Activity in the NO$\nu$A Near Detector

This dissertation describes the analysis and measurement of the triple-differential cross-section of the $\nu_\mu CC$ interaction with Low Hadronic Activity (maximum kinetic energy of 250 MeV for protons and 175 MeV for pions) in the NOvA Near Detector. This cross-section is reported in bins of Muon Kinematics and available hadronic energy. The data corresponds to an accumulated $14.2\times10^{20}$ protons-on-target (POT) in the neutrino mode of the NuMI beam, with a narrow band of neutrino energies peaked at 1.8 GeV. The analysis provides a sample of neutrino–nucleus interactions with an enhanced fraction of quasi-elastic (QE) and two-particle-two-hole (2p2h) interactions and a suppression of resonant pion production (RES) and deep inelastic scattering (DIS) interactions. This enhancement of QE and 2p2h allows for quantitative comparisons with various models of these processes. We find strong disagreement between data and theory-based models in the forward muon direction, especially for the 0.2-0.4 GeV available hadronic energy region.

Lesmeister, James Ryan [Houston U.]↗

Automated Vehicle Detection in a Nuclear Facility Using Low-Frequency Acoustic Sensors

This article presents an analysis of the method of construction and results for a classifier intended to identify vehicles using low-frequency acoustic data collected by a dis-tributed sensor network. This data is collected as part of a venture intended to explore data analytics and multisensor fusion techniques for the monitoring of activities at a test bed nuclear facility located at Oak Ridge National Laboratory in Oak Ridge, Tennessee. We describe the associated target signature and design a classifier based on a multilayer perceptron, followed by an analysis of its results. We discuss how overall accuracy is not the only consideration in constructing this classifier, and how for this application, it is actually desirable to operate at a lower level of accuracy in exchange for a reduction in the false alarm rate, as well as how this relates to the actual deployment of the classifier in practical use.

46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗

QCD evolution of entanglement entropy

Entanglement entropy has emerged as a novel tool for probing nonperturbative quantum chromodynamics (QCD) phenomena, such as color confinement in protons. While recent studies have demonstrated its significant capability in describing hadron production in deep inelastic scatterings, the QCD evolution of entanglement entropy remains unexplored. Here, in this work, we investigate the differential rapidity-dependent entanglement entropy within the proton and its connection to final-state hadrons, aiming to elucidate its QCD evolution. Our analysis reveals a strong agreement between the rapidity dependence of von Neumann entropy, obtained from QCD evolution equations, and the corresponding experimental data on hadron entropy. These findings provide compelling evidence for the emergence of a maximally entangled state, offering new insights into the nonperturbative structure of protons.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Mining for Gluon Saturation at Colliders

Quantum chromodynamics (QCD) is the theory of strong interactions of quarks and gluons collectively called partons, the basic constituents of all nuclear matter. Its non-abelian character manifests in nature in the form of two remarkable properties: color confinement and asymptotic freedom. At high energies, perturbation theory can result in the growth and dominance of very gluon densities at small-x. If left uncontrolled, this growth can result in gluons eternally growing violating a number of mathematical bounds. The resolution to this problem lies by balancing gluon emissions by recombinating gluons at high energies: phenomena of gluon saturation. High energy nuclear and particle physics experiments have spent the past decades quantifying the structure of protons and nuclei in terms of their fundamental constituents confirming predicted extraordinary behavior of matter at extreme density and pressure conditions. In the process they have also measured seemingly unexpected phenomena. We will give a state of the art review of the underlying theoretical and experimental tools and measurements pertinent to gluon saturation physics. We will argue for the need of high energy electron-proton/ion colliders such as the proposed EIC (USA) and LHeC (Europe) to consolidate our knowledge of QCD knowledge in the small x kinematic domains.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗