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At least 217 records · Page 12

Comprehensive SNP Data for 1,323 GWAS Population in Populus trichocarpa and Combined Annotation Files for P. trichocarpa v3.0 and v3.1

The VCF dataset includes genetic variations found in 1,323 Populus trichocarpa genotypes, providing valuable information for scientists studying plant genetics. Researchers have generated this dataset using whole-genome DNA short-read sequencing on the Illumina Genome Analyzer, HiSeq 2000, and HiSeq 2500 platforms. This sequencing effort ensured a minimum expected sequencing depth of 15×. The dataset comprises more than 9.7 million single nucleotide polymorphisms (SNPs) and indel variants. The combined annotation files are derived from P. trichocarpa v3.0 and v3.1. We merged these files to create a comprehensive annotation file used for GWAS analysis. In total, 38,830 genes overlapped between the two versions. For overlapping genes, we defined the start as the smaller and the end as the larger among the two versions to increase the likelihood of locating candidate genetic loci. Additionally, we included 2,505 unique genes from v3.0 and 4,120 unique genes from v3.1, resulting in a total of 45,455 genes in the updated annotation file.

09 BIOMASS FUELS↗

Cyber-physical cascading failure and resilience of power grid: A comprehensive review

Smart grid technologies are based on the integration of the cyber network and the power grid into a cyber-physical power system (CPPS). The increasing cyber-physical interdependencies bring about tremendous opportunities for the modeling, monitoring, control, and protection of power grids, but also create new types of vulnerabilities and failure mechanisms threatening the reliability and resiliency of system operation. A major concern regarding the interdependent networks is the cascading failure (CF), where a small initial disturbance/failure in the network results in a seemingly unexpected large-scale failure. Although there has been a significant volume of recent work in the CF research of CPPS, a comprehensive review remains unavailable. This article aims to fill the gap by providing a systematic literature survey regarding the modeling, analysis, and mitigation of CF in CPPS. The open research questions for further research are also discussed. This article allows researchers to easily understand the state of the art of CF research in CPPS and fosters future work required towards full resolutions to the remaining questions and challenges.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer

Urine proteins can serve as viable biomarkers for diagnosing and monitoring various diseases. A comprehensive urine proteome database, generated from a variety of urine samples with different disease conditions, can serve as a reference resource for facilitating discovery of potential urine protein biomarkers. Herein, we present a urine proteome database generated from multiple datasets using 2D LC-MS/MS proteome profiling of urine samples from healthy individuals (HI), renal transplant patients with acute rejection (AR) and stable graft (STA), patients with non-specific proteinuria (NS), and patients with prostate cancer (PC). A total of ~28,000 unique peptides spanning ~2,200 unique proteins were identified with a false discovery rate of <0.5% at the protein level. Over one third of the annotated proteins were plasma membrane proteins and another one third were extracellular proteins according to gene ontology analysis. Ingenuity Pathway Analysis of these proteins revealed 349 potential biomarkers in the literature-curated database. Forty-three percentage of all known cluster of differentiation (CD) proteins were identified in the various human urine samples. Interestingly, following comparisons with five recently published urine proteome profiling studies, which applied similar approaches, there are still ~400 proteins which are unique to this current study. These may represent potential disease-associated proteins. Among them, several proteins such as serpin B3, renin receptor, and periostin have been reported as pathological markers for renal failure and prostate cancer, respectively. Taken together, our data should provide valuable information for future discovery and validation studies of urine protein biomarkers for various diseases.

60 APPLIED LIFE SCIENCES↗

Radio frequency sensing and its innovative applications in diverse sectors: A comprehensive study

Recent advancements in radio frequency (RF) sensing technology can be attributed to the development of the Internet of Things (IoT), healthcare, RF-identification, and communication applications. RF sensing is a multidisciplinary research field that requires expertise in computing, electronics, and electromagnetics to cover all system features, including protocol development, antenna design, sensor integration, algorithm formulation, interconnection, data, and analytics. The overarching aim of this work is to present detailed information about RF technologies and their innovations and application diversity from the novel work carried out at CSI Lab1, together in one platform with an extensive survey. This study presents state-of-the art applications and RF sensing that include W-Fi, radar, and SDR and RFID-based sensing. A comprehensive survey and study of the advantages and limitations of each non-contact technology is discussed. Additionally, open research gaps have been identified as well. Decades of knowledge and experience have been put to use to meet new challenges and demands. The development and study of RF systems, IoT, RFID sensing, and research and deployment activities, are briefly discussed. The emerging research projects with industry, institutional research centers, and academic studies are also addressed. Finally, an outline of identified potential future research areas is provided, emphasizing opportunities and challenges.

47 OTHER INSTRUMENTATION↗

Advances in Solutions to Improve the Energy Performance of Agricultural Greenhouses: A Comprehensive Review

The increasing global population and the challenges faced by the food production sector, including urbanization, reduction of arable land, and climatic extremes, necessitate innovative solutions for sustainable agriculture. This comprehensive review examines advancements in improving the energy performance of agricultural greenhouses, highlighting innovations in thermal and energy efficiency, particularly in heating and cooling systems. The methods include a systematic analysis of current technologies and their applications in optimizing greenhouse design and functionality. Key findings reveal significant progress in materials and techniques that enhance energy efficiency and operational sustainability. The review identifies gaps in the current knowledge, such as the need for more research on the economic viability of new materials and the development of predictive models for various climatic conditions. The conclusions emphasize the importance of integrating renewable energy technologies and advanced control systems to achieve energy-efficient and sustainable agricultural practices

Castro, Rodrigues Pascoal↗

A Comprehensive Analysis of PINNs for Power System Transient Stability

The integration of machine learning in power systems, particularly in stability and dynamics, addresses the challenges brought by the integration of renewable energies and distributed energy resources (DERs). Traditional methods for power system transient stability, involving solving differential equations with computational techniques, face limitations due to their time-consuming and computationally demanding nature. This paper introduces physics-informed Neural Networks (PINNs) as a promising solution for these challenges, especially in scenarios with limited data availability and the need for high computational speed. PINNs offer a novel approach for complex power systems by incorporating additional equations and adapting to various system scales, from a single bus to multi-bus networks. Our study presents the first comprehensive evaluation of physics-informed Neural Networks (PINNs) in the context of power system transient stability, addressing various grid complexities. Additionally, we introduce a novel approach for adjusting loss weights to improve the adaptability of PINNs to diverse systems. Our experimental findings reveal that PINNs can be efficiently scaled while maintaining high accuracy. Furthermore, these results suggest that PINNs significantly outperform the traditional ode45 method in terms of efficiency, especially as the system size increases, showcasing a progressive speed advantage over ode45.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A Comprehensive Review of Practical Issues for Interoperability Using the Common Information Model in Smart Grids

Smart grids with interoperability improve grid reliability by collecting system information and transferring it to an energy management system and associated applications through a seamless end-to-end connection. To achieve interoperability, it is required to exchange the semantic information within the different domains. The international electrotechnical commission has established the Common Information Model (CIM) tool, which is a standard application programming interface for the exchange of semantic information in power systems. CIM provides a robust framework for accurate data sharing, merging, and transformation into reusable information. However, as CIM provides a basic framework for information exchange, various practical issues arise in establishing an energy management system capable of exchanging information using CIM. This paper aims to offer a comprehensive understanding by summarizing and categorizing the research on the practical use of CIM for interoperability in smart grids. Many papers are analyzed and the issues are classified into CIM extension, harmonization, and validation to address the issues that arise when establishing an integrated information exchange system.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A Comprehensive Loss Model and Comparison of AC and DC Boost Converters

DC microgrids have become a prevalent topic in research in part due to the expected superior efficiency of DC/DC converters compared to their AC/DC counterparts. Although numerous side-by-side analyses have quantified the efficiency benefits of DC power distribution, these studies all modeled converter loss based on product data that varied in component quality and operating voltage. To establish a fair efficiency comparison, this work derives a formulaic loss model of a DC/DC and an AC/DC PFC boost converter. These converters are modeled with identical components and an equivalent input and output voltage. Simulated designs with real components show AC/DC boost converters between 100 W to 500 W having up to 2.5 times more loss than DC/DC boost converters. Although boost converters represent a fraction of electronics in buildings, these loss models can eventually work toward establishing a comprehensive model-based full-building analysis.

42 ENGINEERING↗

Time Synchronization Techniques in the Modern Smart Grid: A Comprehensive Survey

In modern smart grids, accurate and synchronized time signals are essential for effective monitoring, protection, and control. Various time synchronization methods exist, each tailored to specific application needs. Widely adopted solutions, such as GPS, however, are vulnerable to challenges such as signal loss and cyber-attacks, underscoring the need for reliable backup or supplementary solutions. This paper examines the timing requirements across different power grid applications and provides a comprehensive review of available time synchronization mechanisms. Through a comparative analysis of timing methods based on accuracy, flexibility, reliability, and security, this study offers insights to guide the selection of optimal solutions for seamless grid integration.

comparison↗

Comprehensive Evaluation of Agrivoltaics Research: Breadth, Depth, and Insights for Future Research

Agrivoltaics integrates agricultural production with solar energy generation to address challenges related to land use, food security, and renewable energy development. This study provides the most comprehensive evaluation to date of global agrivoltaic research, aiming to classify the literature, identify strengths and gaps, and guide future work. We systematically screened over 3000 English-language publications through 2023 for relevant agrivoltaic publications. A total of 670 studies were categorized in the InSPIRE Data Portal across five agrivoltaic activities and multiple hierarchical themes, including physical, biological, technological, social, and crosscutting domains. We found that research was concentrated on crop production, microclimate dynamics, and PV performance, with gaps in areas like human health, wildlife, policy, and standardized methodologies. Although the U.S. emphasizes animal grazing and habitat-based systems in practice, most U.S.-based studies focused disproportionately on crop production. The analysis revealed uneven geographic and topical representation and highlighted a lack of integrated, interdisciplinary approaches. This study concludes that while agrivoltaic research has grown rapidly, more coordinated efforts could support standardized data collection, address overlooked ecological and social impacts, and align research focus with real-world system implementation, ultimately improving the scalability and successful deployment of agrivoltaic systems.

14 SOLAR ENERGY↗

A Comprehensive Overview of Postbiotics with a Special Focus on Discovery Techniques and Clinical Applications

The increasing interest in postbiotics, a term gaining recognition alongside probiotics and prebiotics, aligns with a growing number of clinical trials demonstrating positive outcomes for specific conditions. Postbiotics present several advantages, including safety, extended shelf life, ease of administration, absence of risk, and patentability, making them more appealing than probiotics alone. This review covers various aspects, starting with an introduction, terminology, classification of postbiotics, and brief mechanisms of action. It emphasizes microbial metabolomics as the initial step in discovering novel postbiotics. Commonly employed techniques such as NMR, GC-MS, and LC-MS are briefly outlined, along with their application principles and limitations in microbial metabolomics. The review also examines existing research where these techniques were used to identify, isolate, and characterize postbiotics derived from different microbial sources. The discovery section concludes by highlighting challenges and future directions to enhance postbiotic discovery. In the second half of the review, we delve deeper into numerous published postbiotic clinical trials to date. We provide brief overviews of system-specific trial applications, their objectives, the postbiotics tested, and their outcomes. The review concludes by highlighting ongoing applications of postbiotics in extended clinical trials, offering a comprehensive overview of the current landscape in this evolving field.

60 APPLIED LIFE SCIENCES↗

Characterization of Local and Systemic Impact of Whitefly (Bemisia tabaci) Feeding and Whitefly-Transmitted Tomato Mottle Virus Infection on Tomato Leaves by Comprehensive Proteomics

Tomato mottle virus (ToMoV) is a ssDNA plant begomovirus transmitted to solanaceous crops by the whitefly species complex (Bemisia tabaci), causing stunted growth, leaf mottling, and reduced fruit yield. Using a genetic repertoire of 7 genes, ToMoV pathogenesis includes manipulation of multiple plant biological processes to circumvent antiviral defenses. To further understand the effects of whitefly feeding and whitefly-transmitted ToMoV infection on tomato plants (Solanum lycopersicum ‘Florida Lanai’), we generated comprehensive protein profiles of leaves subjected to feeding by either (1) viruliferous whiteflies harboring ToMoV, or (2) non-viruliferous whiteflies, or (3) a no-feeding control. In each condition (1-3), whiteflies were confined to clip cages on a mature leaf for 3 days. The effects of whitefly feeding and ToMoV infection were measured both locally and systemically by sampling either a mature leaf directly from the site of whitefly feeding, or from a newly formed leaf 10 days post feeding (dpf). At 3 dpf, relatively few biological processes were affected specifically by ToMoV at the site of feeding, and include proteins associated with translation initiation and elongation, and plasmodesmata dynamics. In contrast, the systemic impacts of ToMoV on younger leaves at 10 dpf were more pronounced and included a virus-specific change in plant proteins associated with mRNA maturation and export, RNA-dependent DNA methylation, and other plant anti-viral transcriptional gene silencing systems. Our analysis supports previous findings and provides novel insight into biological processes in tomato altered locally and systemically by whitefly feeding and ToMoV infection.

59 BASIC BIOLOGICAL SCIENCES↗

Prediction of Silicon Content in a Blast Furnace via Machine Learning: A Comprehensive Processing and Modeling Pipeline

Silicon content plays an important role in determining the operational efficiency of blast furnaces (BFs) and their downstream processes in integrated steelmaking; however, existing sampling methods and first-principles models are somewhat limited in their capability and flexibility. Current data-based prediction models primarily rely on a limited set of manually selected furnace parameters. Additionally, different BFs present a diverse set of operating parameters and state variables that are known to directly influence the hot metal’s silicon content, such as fuel injection, blast temperature, and raw material charge composition, among other process variables that have their own impacts. The expansiveness of the parameter set adds complexity to parameter selection and processing. This highlights the need for a comprehensive methodology to integrate and select from all relevant parameters for accurate silicon content prediction. Providing accurate silicon content predictions would enable operators to adjust furnace conditions dynamically, improving safety and reducing economic risk. To address these issues, a two-stage approach is proposed. First, a generalized data processing scheme is proposed to accommodate diverse furnace parameters. Second, a robust modeling pipeline is used to establish a machine learning (ML) model capable of predicting hot metal silicon content with reasonable accuracy. The method employed herein predicted the average Si content of the upcoming furnace cast with an accuracy of 91% among 200 target predictions for a specific furnace provisioned by the XGBoost model. This prediction is achieved using only the past shift’s operating conditions, which should be available in real time. This performance provides a strong baseline for the modeling approach with potential for further improvement through provision of real-time features.

Chemistry↗

An Evaluation of Sustainable Power System Resilience in the Face of Severe Weather Conditions and Climate Changes: A Comprehensive Review of Current Advances

Natural disasters pose significant threats to power distribution systems, intensified by the increasing impacts of climate changes. Resilience-enhancement strategies are crucial in mitigating the resulting social and economic damages. Hence, this review paper presents a comprehensive exploration of weather management strategies, augmented by recent advancements in machine learning algorithms, to show a sustainable resilience assessment. By addressing the unique challenges posed by diverse weather conditions, we propose flexible and intelligent solutions to navigate disaster complications effectively. This proposition emphasizes sustainable practices that not only address immediate disaster complications, but also prioritize long-term resilience and adaptability. Furthermore, the focus extends to mitigation strategies and microgrid technologies adapted to distribution systems. Through statistical analysis and mathematical formulations, we highlight the critical role of these advancements in mitigating severe weather conditions and ensuring the system reliability.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A comprehensive review of dwell time optimization methods in computer-controlled optical surfacing

Dwell time plays a vital role in determining the accuracy and convergence of the computer-controlled optical surfacing process. However, optimizing dwell time presents a challenge due to its ill-posed nature, resulting in non-unique solutions. To address this issue, several well-known methods have emerged, including the iterative, Bayesian, Fourier transform, and matrix-form methods. Despite their independent development, these methods share common objectives, such as minimizing residual errors, ensuring dwell time's positivity and smoothness, minimizing total processing time, and enabling flexible dwell positions. This paper aims to comprehensively review the existing dwell time optimization methods, explore their interrelationships, provide insights for their effective implementations, evaluate their performances, and ultimately propose a unified dwell time optimization methodology.

36 MATERIALS SCIENCE↗

Bioverse: A Comprehensive Assessment of the Capabilities of Extremely Large Telescopes to Probe Earth-like O 2 Levels in Nearby Transiting Habitable-zone Exoplanets

Molecular oxygen is a strong indicator of life on Earth and may indicate biological processes on exoplanets too. Recent studies proposed that Earth-like O 2 levels might be detectable on nearby exoplanets using high-resolution spectrographs on future extremely large telescopes (ELTs). However, these studies did not consider constraints like relative velocities, planet occurrence rates, and target observability. We expanded on past studies by creating a homogeneous catalog of 286,391 main-sequence stars within 120 pc using Gaia DR3 and used the Bioverse framework to simulate the likelihood of finding nearby transiting Earth analogs. We also simulated a survey of M dwarfs within 20 pc accounting for η ⊕ estimates, transit probabilities, relative velocities, and target observability to determine how long ELTs and theoretical 50–100 m ground-based telescopes need to observe to probe for Earth-like O 2 levels with an R = 100,000 spectrograph. This would only be possible within 50 yr for up to ~21% of nearby M-dwarf systems if a suitable transiting habitable-zone Earth analog was discovered, assuming signals from every observable partial transit from each ELT can be combined. If so, Earth-like O 2 levels could be detectable on TRAPPIST-1 d–g within 16–55 yr, respectively, and about half that time with an R = 500,000 spectrograph. These results have important implications for whether ELTs can survey nearby habitable-zone Earth analogs for O 2 via transmission spectroscopy. Our work provides the most comprehensive assessment to date of the ground-based capabilities to search for life beyond the solar system.

79 ASTRONOMY AND ASTROPHYSICS↗

The Gravity Collective: A Comprehensive Analysis of the Electromagnetic Search for the Binary Neutron Star Merger GW190425

We present an ultraviolet to infrared search for the electromagnetic (EM) counterpart to GW190425, the second ever binary neutron star merger discovered by the LIGO-Virgo-KAGRA Collaboration. GW190425 was more distant and had a larger localization area than GW170817, so we use a new tool, Teglon, to redistribute the GW190425 localization probability in the context of galaxy catalogs within the final localization volume. We derive a 90th percentile area of 6688 deg 2 , a ∼1.5× improvement relative to the LIGO/Virgo map, and show how Teglon provides an order-of-magnitude boost to the search efficiency of small (≤1 deg 2 ) field-of-view instruments. We combine our data with a large, publicly reported imaging data set, covering 9078.59 deg 2 of unique area and 48.13% of the LIGO/Virgo-assigned localization probability, to calculate the most comprehensive kilonova (KN), short gamma-ray burst (sGRB) afterglow, and model-independent constraints on the EM emission from a hypothetical counterpart to GW190425 to date under the assumption that no counterpart was found in these data. If the counterpart were similar to AT 2017gfo, there would be a 28.4% chance of it being detected in the combined data set. We are relatively insensitive to an on-axis sGRB, and rule out a generic transient with a similar peak luminosity and decline rate as AT 2017gfo to 30% confidence. Finally, across our new imaging and publicly reported data, we find 28 candidate optical counterparts that we cannot rule out as being associated with GW190425, finding that four such counterparts discovered within the localization volume and within 5 days of merger exhibit luminosities consistent with a KN.

79 ASTRONOMY AND ASTROPHYSICS↗