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At least 199 records · Page 11

On spatial mutation-selection models

We discuss the selection procedure in the framework of mutation models. We study the regulation for stochastically developing systems based on a transformation of the initial Markov process which includes a cost functional. The transformation of initial Markov process by cost functional has an analytic realization in terms of a Kimura-Maruyama type equation for the time evolution of states or in terms of the corresponding Feynman-Kac formula on the path space. The state evolution of the system including the limiting behavior is studied for two types of mutation-selection models.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Two-color spatial and temporal temperature measurements using a streaked soft x-ray imager

A dual-channel streaked soft x-ray imager has been designed and used on high energy-density physics experiments at the National Ignition Facility. This streaked imager creates two images of the same x-ray source using two slit apertures and a single shallow angle reflection from a nickel mirror. Thin filters are used to create narrow band pass images at 510 eV and 360 eV. When measuring a Planckian spectrum, the brightness ratio of the two images can be translated into a color-temperature, provided that the spectral sensitivity of the two images is well known. To reduce uncertainty and remove spectral features in the streak camera photocathode from this photon energy range, a thin 100 nm CsI on 50 nm Al streak camera photocathode was implemented. Provided that the spectral shape is well-known, then uncertainties on the spectral sensitivity limits the accuracy of the temperature measurement to approximately 4.5% at 100 eV.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Median Statistics Analysis of Deuterium Abundance Measurements and Spatial Curvature Constraints

Zavarygin et al. compiled a list of 15 deuterium abundance measurements; two were discarded because the remaining 13 measurements are then consistent with Gaussianity. Here, those authors found that the weighted-mean baryon density (Ω b h 2) determined from the 13 measurements is mildly discrepant (1.6σ) with that determined from the Planck 2015 cosmic microwave background anisotropy data in a flat cosmogony. We find that a median statistic central estimate of Ω b h 2 from all 15 deuterium abundance measurements is a more accurate estimate; is very consistent with Ω b h 2 estimated from Planck 2015 data in a flat cosmogony, but is about 2σ lower than that found in a closed cosmogonical model from the Planck 2015 data.

79 ASTRONOMY AND ASTROPHYSICS↗

On Space Charge and Spatial Distribution of Defects in Yttria-Stabilized Zirconia

Space charge in 8YSZ is examined theoretically. The Poisson-Boltzmann equation is solved by free energy minimization. The Helmholtz free energy of a crystal containing various defects is minimized subject to two constraints: The total dopant concentration is fixed and the maximum amount of surface charge is limited by site density. Large dopant concentration leads to defect concentrations which deviate from Boltzmann distribution. When free energy isminimized assuming all defects attain their equilibrium distributions, the corresponding electrochemical potentials are equilibrated through the crystal. These calculations correspond to long annealing times. Calculations are also conducted for a case in which only oxygen vacancies are allowed to equilibrate at lower temperature after a high temperature anneal. At lower temperatures, cations are frozen corresponding to high temperature anneal. In this case, only the electrochemical potential of oxygen vacancies equilibrates. In all cases Y segregates to grain boundaries/free surfaces lowering the corresponding oxygen vacancy concentration, consistent with reported effect of space charge on grain boundary conductivity. The results show a significant concentration of oxygen vacancies form defect complexes with Y dopant. Thus, free oxygen vacancy concentration is considerably lower than the usually assumed electroneutrality condition based on total dopant concentration.

36 MATERIALS SCIENCE↗

Data for The Stem Cell-Type Transcriptome of Bioenergy Sorghum Reveals the Spatial Regulation of Secondary Cell Wall Networks

Bioenergy sorghum is a low-input, drought-resilient, deep-rooting annual crop that has high biomass yield potential enabling the sustainable production of biofuels, biopower, and bioproducts. Bioenergy sorghum’s 4-5 m stems account for ~80% of the harvested biomass. Stems accumulate high levels of sucrose that could be used to synthesize bioethanol and useful biopolymers if information about stem cell-type gene expression and regulation was available to enable engineering. To obtain this information, Laser Capture Microdissection (LCM) was used to isolate and collect transcriptome profiles from five major cell types that are present in stems of the sweet sorghum Wray. Transcriptome analysis identified genes with cell-type specific and cell-preferred expression patterns that reflect the distinct metabolic, transport, and regulatory functions of each cell type. Analysis of cell-type specific gene regulatory networks (GRNs) revealed that unique TF families contribute to distinct regulatory landscapes, where regulation is organized through various modes and identifiable network motifs. Cell-specific transcriptome data was combined with a stem developmental transcriptome dataset to identify the GRN that differentially activates the secondary cell wall (SCW) formation in stem xylem sclerenchyma and epidermal cells. The cell-type transcriptomic dataset provides a valuable source of information about the function of sorghum stem cell types and GRNs that will enable the engineering of bioenergy sorghum stems.

Software↗