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In early-to-mid March 2020, 20 of 46 (43%) COVID-19 cases at a tertiary care hospital in San Francisco, California were travel related. Cases were significantly associated with travel to either Europe (odds ratio, 6.1) or New York (odds ratio, 32.9). Viral genomes recovered from 9 of 12 (75%) cases co-clustered with lineages circulating in Europe.
We present results from complementary geological, topographic, seismic and electrical resistivity surveys at the Sagebrush Flat (SGB) site along the Clark fault (CF) strand of the San Jacinto fault zone trifurcation area southeast of Anza, California. Joint interpretation of these data sets, each with unique spatiotemporal sensitivities, allow us to better characterize the shallow (<100 m) fault zone at this structurally complex site. Geological mapping at the surface shows the CF has three main subparallel strands within a <100 m zone with varying degrees of rock damage. These strands intersect units of banded gneiss and tonalite, and various sedimentary units. Near the surface, the weathered but more intact tonalite and gneiss to the southwest have relatively high VP. The low-lying flat sedimentary basins around the two southwestern-most CF strands and elevated damaged gneiss to the northeast have lowest VP <500 m s–1. The high relief of the northeast gneiss unit may in part be explained by its extensive damage and inferred increased relative rock uplift. Resistivity imaging shows the unconsolidated dry basin sediments (maximum >1300 Ohm.m) contrasted against the compacted fine-grained (potentially wet) materials within the CF core and the Bautista Formation (minimum <40 Ohm.m), which is slightly elevated above the flat basins. The inverse relationship between VP (increases) and resistivity (decreases) in the uppermost ~15 m can be characterized as log–log linear with slopes of –2.6 to –4. At depths >30 m, the velocity heterogeneity near the surface merges into larger-scale structures that are generally slower on the northeast side of the CF core compared to the southwest side (as much as ~40 per cent reduction in average VP). A previous study revealed a 20–37 per cent variability in peak ground velocities across the SGB site from local earthquakes. The upper end of that range is associated with the near-surface unconsolidated sedimentary basins and northeast damaged gneiss unit. Preliminary analysis of time-dependent topography mostly shows effects of changing vegetation and anthropogenic activity.
SUMMARY We analyse dominant sources identified in a catalogue of more than 156 000 localizations performed using a 26-d data set recorded by a dense array set on the San Jacinto fault near Anza, in California. Events were localized using an array processing technique called Match Field Processing. As for all array processing techniques, the quality of the event position decrease when the events are outside of the array. We thus separate localizations in and outside the array using simple geometrical conditions. We compare the time distribution of the localization to additional data such as meteorological data, day of human activity as well as existing catalogues to determine the nature of the dominant events located using our method. We find that most of the events located outside of the array could be attributed to a surface structure excited by wind. On the other hand, part of the localizations under the array occur during regional earthquakes and could correspond to diffraction on the fault's heterogeneities. The rest of the localizations inside the array could be generated by the fault itself.
SUMMARY We examine the cyclic amplitude variation of seismic noise recorded by continuous three-component broad-band seismic data with durations spanning 91–713 d (2008–2011) from three different networks: Anza seismic network, IDA network and the transportable seismic array. These stations surround the San Jacinto Fault Zone (SJFZ) in southern California. We find the seismic noise amplitudes exhibit a cyclical variation between 0.3 and 7.2 Hz. The high-frequency (≥0.9 Hz) noise variations can be linked to human activity and are not a concern. Our primary interest is signals in the low frequencies (0.3–0.9 Hz), where the seismic noise is modulated by semi-diurnal tidal mode M2. These long-period (low-frequency) variations of seismic noise can be attributed to a temporal change of the ocean waves breaking at the shoreline, driven by ocean tidal loading. We focus on the M2 variation of seismic noise at f = 0.6 Hz, travelling distances of ∼92 km through the crust from offshore California to the inland Anza, California, region. Relative to the shoreline station, data from the inland stations show a phase lag of ∼ –12°, which we attribute to the cyclic change in M2 that can alter crustal seismic attenuation. We also find that for mode M2 at 0.6 Hz, the amplitude variations of the seismic quality factor (Q) depend on azimuth and varies from 0.22 per cent (southeast to northwest) to 1.28 per cent (northeast to southwest) with Q = 25 for Rayleigh waves. We propose the direction dependence of the Q variation at 0.6 Hz reflects the preferred orientation of subfaults parallel to the main faulting defined by the primarily N45°W strike of the SJFZ.
With the worldwide growth in deploying high-voltage direct current (HVDC) transmission systems, their ability to facilitate black-start (BS) restoration has been a research topic of interest. In this context, voltage source converter (VSC)-HVDC is regarded as a BS resource, and this paper proposes a VSC-HVDC-assisted parallel BS restoration strategy in bulk power systems. The proposed strategy consists of two stages: 1) determination of the VSC and generator startup sequence and 2) load restoration simulation. In the first stage, the entire blackout system is sectionalized into multiple subsystems. Each subsystem includes a VSC-HVDC station or traditional BS unit, it independently determines its generator startup timeline and the energization timelines for buses and lines. The second stage involves load restoration, conceptualized as a modified unit commitment problem, with the timelines established in the first stage work as critical inputs. The proposed BS restoration strategy is tested on the San Diego power system to simulate the 2011 Southwest blackout. The simulation results validate the effectiveness of using VSC-HVDC links as a BS resource which not only speeds up the restoration process but also reduces both energy and economic losses.
Ammonia-oxidizing archaea (AOA) are key for the transformation of ammonia to oxidized forms of nitrogen in aquatic environments around the globe, including nutrient-rich coastal and estuarine waters such as San Francisco Bay (SFB). Using metagenomics and 16S rRNA gene amplicon libraries, we found that AOA are more abundant than ammonia-oxidizing bacteria (AOB) and nitrite-oxidizing bacteria (NOB), except in the freshwater stations in SFB. In South SFB, we observed recurrent AOA blooms of “Candidatus Nitrosomarinus catalina” SPOT01-like organisms, which account for over 20% of 16S rRNA gene amplicons in both surface and bottom waters and co-occur with weeks of high nitrite concentrations (>10 μM) in the oxic water column. We observed pronounced nitrite peaks occurring in the autumn for 7 of the last 9 years (2012 to 2020), suggesting that seasonal AOA blooms are common in South SFB. We recovered two high-quality AOA metagenome-assembled genomes (MAGs), including a Nitrosomarinus-like genome from the South SFB bloom and another Nitrosopumilus genome originating from Suisun Bay in North SFB. Both MAGs cluster with genomes from other estuarine/coastal sites. Analysis of Nitrosomarinus-like genomes show that they are streamlined, with low GC content and high coding density, and harbor urease genes. Our findings support the unique niche of Nitrosomarinus-like organisms which dominate coastal/estuarine waters and provide insights into recurring AOA blooms in SFB.
The San Francisco Bay Area's Metropolitan Transportation Commission (MTC) and the regional transportation planning agency for the nine-county Bay Area conducted the survey. The basic purpose for the survey was for the development of travel demand models to simulate the various components of travel behavior: auto ownership, trip frequency (trip generation), and the distribution of trips between origins and destinations by travel mode. Planners at MTC envisioned the 1990 survey as the first wave of a multi-wave household panel survey designed to capture both short- and long-term changes in regional travel behavior. The 1990 survey collected single-weekday travel data from nearly 9,900 Bay Area households and multiple-weekday travel data from nearly 1,500 households. The 1990 survey effort also included a separate sub-project, funded by the Bay Area Rapid Transit (BART) District, to collect multiple-weekday travel data from 1,000 BART-using households. The BART survey and the MTC multiple-weekday survey were completed in the spring of 1990; the MTC single-weekday survey was continued and completed during the autumn of 1990.
This data package contains full-range (350 – 2500 nm) leaf reflectance and transmittance spectra of leaves collected at the San Lorenzo forest canopy crane site in Panama (PA-SLZ) from January to March 2020. Around 1000 leaves were measured from 50 species and various leaf phenological stages. Leaves were sampled from both the top of the canopy and multiple heights within the canopy from 10 vertical profiles and for six core species, from the top of the canopy. This data package includes processed leaf spectra (*.csv), and raw data from the spectroradiometer (compressed as .zip). Metadata files include data descriptions (_dd.csv) for tabular data and sample information and a description of the field campaign protocol (PA-SLZ_2020_Protocol.pdf). In addition to the leaf spectral measurements included here, these samples were also used for measurement of leaf gas exchange, carbon and nitrogen content and leaf mass per unit leaf area (LMA) contained in related data packages.
This data package contains photosynthetic CO2 response curves (ACi curves), light response curves (AQ curves), dark adapted dark respiration, conductance curves, and survey measurements for leaves measured at the San Lorenzo forest canopy crane site, Panama (PA-SLZ) from January to March 2020. Leaves were sampled from both the top of the canopy and multiple heights within the canopy from 10 vertical profiles and included around 50 species. In addition, six core species were also measured, from the top of the canopy. Fitted maximum carboxylation rate (Vcmax), maximum electron transport rate (Jmax), and triose phosphate utilization rate (TPU) were derived from measured data as well as the convexity, light use efficiency, apparent quantum yield, and Rdark. The measurements can also be used to derive the conductance parameters g0 and g1 of stomatal model. All the gas exchange data and metadata are presented in .csv files and complete instrument output are included in .zip folders. Data and metadata meet the ESS-DIVE leaf-level gas exchange reporting format requirements. The protocol details are provided as pdf documents. In addition to gas exchange data described here these samples were also used for measurement of leaf optical properties, carbon and nitrogen content, and leaf mass per unit leaf area (LMA) these data can be cross linked using the unique sample ID and are provided in separate related data packages. Sample information including canopy elevation and leaf area index (LAI) can be found in the related “Leaf and canopy traits” data package.
This data package includes leaf traits, canopy traits and sample details for leaves from 71 species sampled from the San Lorenzo forest canopy crane site, Panama (PA-SLZ) during the BNL field campaign in January to March 2020. Each leaf sample is described with species, phenological stage and location within vertical canopy profiles. Leaf area index (LAI) and height is presented for each canopy profile location. Leaf mass per area (LMA), leaf water content (LWC) and leaf carbon and nitrogen content are included for a subset of the samples. This data package includes sample details, processed data for leaf traits and LAI (*.csv), LAI raw data (compressed as *.zip) and digital camera images (*.jpg, compressed as *.zip) of the leaf samples. Metadata files include data descriptions (_dd.csv) for tabular data, a list of all species sampled during the campaign (*.csv) and a detailed description of the field campaign protocol and methods (*.pdf). See related datasets for leaf gas exchange, leaf water potential and leaf spectral measurements made on the samples described here.
This data package contains pre-dawn and diurnal leaf water potential (LWP) measured on four trees at the STRI San Lorenzo crane site between January and March 2020. These data were collected from four of the core trees instrumented for sap flux (Guatteria dumetorum, Miconia minutiflora, Terminalia amazonia,Vochysia ferruginea), with measurements made on a single tree on each day. For each tree, leaf samples were harvested from fully sunlit, top of canopy positions pre-dawn (06:00 local time), and then hourly for the subsequent 12 hours. Leaf water potential was measured on 6 - 10 leaves from each time point. Harvested leaves were stored in a cool humid bag in the dark for no more than 40 minutes before LWP was measured. These data were collected as part of a 2020 dry season campaign led by Brookhaven National Laboratory (BNL). Refer to related datasets for further sample details, and paired leaf mass area (LMA), survey gas exchange, and leaf chemistry data. The files included in this data package are in .csv format, and include one data file and three metadata files.
This data package contains predawn leaf water potential (LWP) data for leaves sampled in the San Lorenzo forest canopy crane site in Panama (PA-SLZ) from January to March 2020. Data were collected from 31 species, from top of canopy and vertical profiles within the canopy. All data and metadata are presented in .csv files. The protocol details are provided as *.pdf. See related data packages from the BNL 2020 field campaign for leaf optical properties and gas exchange measurements. Sample information including canopy elevation and leaf area index (LAI) can be found in the related “Leaf and canopy traits” data package.
This data package comprises reflectance spectra, thermal and visible images of top of canopy tree crowns at the San Lorenzo Protected Area, Panama. Data were collected using the Smithsonian Tropical Research Institute (STRI) canopy access crane, from positions approximately 4 m above the target tree canopy. Canopy reflectance spectra were collected using an HR-1024i full range spectroradiometer (350–2500 nm, SVC, Poughkeepsie, NY, USA) with a 14-degree lens. Canopy thermal images were captured using an 8640-S series USB Calibrated Thermal Camera (ICI International, Beaumont, TX, USA). Visible images were collected using an AW130 waterproof/shockproof camera (Nikon, Tokyo, Japan). Data were collected on three days, on 16 canopies from 10 tree species. On both January 30, 2020, and February 27, 2020, we collected spectra at three time points, in the morning, midday, and afternoon. On February 18, 2020, we collected data around midday only. Due to technical issues, digital photography was collected on 30 January only. This dataset includes unprocessed data only, including spectral data (.sig or .sed), thermal images (.i16), and photographs (.raw), a detailed method description (.pdf), species information (.csv) and ESS-DIVE file-level metadata (FLMD.csv).
This is the AmeriFlux version of the carbon flux data for the site US-ASH USSL San Joaquin Valley Almond High Salinity.
ABSTRACT Recently, generative models have become a computationally efficient alternative to physics-based numerical simulations of ground motions. Neural networks can learn from existing ground-motion data to generate unobserved ground-motion data at new source and site locations. A key challenge with generative models is ensuring that predicted ground motions remain within a physically realistic range. For this purpose, we developed an empirical, nonergodic ground-motion model (GMM) for small-magnitude earthquakes in the San Francisco Bay area based on about 5000 recordings per component for Mw ≤ 4 earthquakes. The nonergodic GMM predicts spatially varying median source, site, and path effects for both the Fourier amplitude spectrum (FAS) and the Fourier phase derivative (a proxy for duration), as well as the corresponding epistemic uncertainty for each term. For FAS, our model shows above-average source and site effects in the western part of the region and below-average effects in the eastern part, with regional effects exhibiting larger spatial correlation lengths with increasing frequency. For duration, the source term is negligible for small-magnitude earthquakes, and the site term leads to site-specific variations up to 5 s. Path effects for FAS and duration depend on the source–site pair and are extrapolated spatially using recent methods for path-effect modeling. The aleatory variability of the within-site within-path residuals is similar to the variability found in previous studies for other regions. The nonergodic model provides two key contributions: first, median adjustment terms that are transferable to larger magnitude earthquakes, further reducing aleatory variability in probabilistic seismic hazard analysis; second, region-specific criteria for validating machine learning-based ground-motion generators to evaluate whether synthetic ground motions exhibit physically realistic source, site, and path effects.
In Small-Angle Scattering experiments, accurate distance information between sample and the detector is important. During the winter outage, January 2021, positions of detector, especially along the beam direction, were measured with the laser alignment tool to confirm values regularly deduced from silver behenate measurements. The results show that the current detector-z position of the EQ-SANS is accurate at all typically used detector positions.
EPOC uses the Deep Dive process to discuss and analyze current and planned science, research, or education activities and the anticipated data output of a particular use case, site, or project to help inform the strategic planning of a campus or regional networking environment. This includes understanding future needs related to network operations, network capacity upgrades, and other technological service investments. A Deep Dive comprehensively surveys major research stakeholders’ plans and processes in order to investigate data management requirements over the next 5–10 years. Between December 2021 and April 2022 staff members from the Engagement and Performance Operations Center (EPOC) met with researchers and staff from San Diego State University (SDSU) the purpose of a Deep Dive into scientific and research drivers. The goal of this activity was to help characterize the requirements for a number of campus use cases, and to enable cyberinfrastructure support staff to better understand the needs of the researchers within the community.
Enchant Energy, L.L.C. (Enchant) was selected to conduct a Front-End Engineering Design study (FEED) for the addition of a full-scale carbon capture system to remove carbon dioxide from the flue gas emissions of the two coal-fired generating units (total of 847 MW net) at San Juan Generating Station (SJGS), using Mitsubishi Heavy Industries Americas (MHIA) KM CDR Process™. Sargent & Lundy LLC (S&L) was selected as the primary technical lead, and along with various other organizations, were able to support Enchant’s completion of the following FEED tasks: Task 1 – Project Management & Planning; Task 2 – FEED Study; Task 3 - Final FEED Study Package. The FEED study period was between October 15, 2019 to September 30, 2022.