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At least 199 records · Page 11

Logistics of defense: The contribution of endomembranes to plant innate immunity

Phytopathogens cause plant diseases that threaten food security. Unlike mammals, plants lack an adaptive immune system and rely on their innate immune system to recognize and respond to pathogens. Plant response to a pathogen attack requires precise coordination of intracellular traffic and signaling. Spatial and/or temporal defects in coordinating signals and cargo can lead to detrimental effects on cell development. The role of intracellular traffic comes into a critical focus when the cell sustains biotic stress. In this review, we discuss the current understanding of the post-immune activation logistics of plant defense. Specifically, we focus on packaging and shipping of defense-related cargo, rerouting of intracellular traffic, the players enabling defense-related traffic, and pathogen-mediated subversion of these pathways. We highlight the roles of the cytoskeleton, cytoskeleton–organelle bridging proteins, and secretory vesicles in maintaining pathways of exocytic defense, acting as sentinels during pathogen attack, and the necessary elements for building the cell wall as a barrier to pathogens. We also identify points of convergence between mammalian and plant trafficking pathways during defense and highlight plant unique responses to illustrate evolutionary adaptations that plants have undergone to resist biotic stress.

59 BASIC BIOLOGICAL SCIENCES↗

A Reverse Logistics Tool For Ev Battery Recycling And Repurposing,

The demand for electric vehicles (EVs) in the United States is projected to rise significantly, with sales expected to reach approximately 4.1 million units by 2030. However, the U.S. remains heavily reliant on imports for the batteries and critical raw materials—such as lithium, cobalt, and nickel—that power these vehicles. As of 2024, around 70% of these imports originate from China. This dependency has become even more precarious following China’s imposition of export restrictions in April 2025, a retaliatory move against U.S. tariffs. These developments highlight the strategic vulnerabilities posed by China’s dominant position in the critical materials market. Compounding the issue, decades of intensive extraction have severely depleted global reserves of critical materials, widening the gap between supply and growing demand. This situation underscores the urgent need for the U.S. and other nations to diversify their sources of critical materials and enhance domestic capabilities to secure these resources—an essential step toward ensuring long-term energy security. At the end of their lifecycle—whether due to the battery’s degradation or the retirement of the vehicle—EV batteries are often improperly disposed of or sent to landfills. However, many of these batteries still retain usable capacity and can follow one of three alternative pathways: (a) Re-used: deployed in another vehicle with a shorter driving range, (b) Re-purposed: utilized act as a backup storage/power for data centers, solar panels, and e-scotters or (c) Recycled: broken down to recover the critical materials. To that end, the proposed tool (REBORN) is designed to optimize the reverse logistics network for battery repurposing and recycling. Its goal is to minimize associated costs while identifying optimal locations for battery collection and processing. Ultimately, REBORN ensures that each battery is used to its fullest potential.

Srinivas, SrikarV. [Idaho National Laboratory (INL↗

Subsurface Hydrogen Assessment, Storage, and Technology Acceleration (SHASTA) - Hydrogen Estimator for Logistical Planning (HELP) User’s Manual

This user’s manual describes version 1.0 of the SHASTA-HELP (Subsurface Hydrogen Assessment, Storage, and Technology Acceleration (SHASTA) - Hydrogen Estimator for Logistical Planning (HELP)) tool and provides instructions for use. The purpose of the SHASTA-HELP tool is to integrate the suite of tools developed by the SHASTA research team in a web-based framework for ease of access and more advanced, integrated analysis. This tool contains functionality for estimating the storage potential of pure and blended natural gas-hydrogen mixtures in various subsurface formations and is intended to be used for pre-characterization or site screening purposes. Detailed storage analysis should be conducted by full reservoir simulation models.

08 HYDROGEN↗

Integrated Biomass Supply Analysis and Logistics Model (IBSAL) 2.0

The Integrated Biomass Supply Analysis and Logistics (IBSAL) 2.0 models a feedstock supply shed's harvest and transport process to estimate the cost of delivered feedstock. The model sets up a supply shed of fields, harvests the fields using a series of sequential harvest operations with different crew types, and transports the harvested feedstock to a storage facility or refinery. The model reports many metrics; the most important ones include the crew resources required for harvest and transport operations, equipment utilization, fuel usage, amount of dry mass harvested, the cost for each operation, and the expected time to complete the harvest with the provided resources. IBSAL 2.0 is a complete redesign around the ExtendSim database, and it is faster and easier to reapply the model to different feedstocks.

09 BIOMASS FUELS↗

Biofuel Infrastructure, Logistics, and Transportation (BILT) Model for Supply Chain Analysis: Documentation for BILT

The Biofuel Infrastructure, Logistics, and Transportation (BILT) model for supply chain analysis developed by Oak Ridge National Laboratory for the US Department of Energy is an accounting and optimization model that tracks the entire biomass-to-end-use supply chain (e.g., biomass production, transportation, and processing) for potential feedstocks, pathways, and end uses. This report summarizes the development, function, and operation of the BILT model.

09 BIOMASS FUELS↗

classLog: Logistic regression for the classification of genetic sequences

Introduction Sequencing and phylogenetic classification have become a common task in human and animal diagnostic laboratories. It is routine to sequence pathogens to identify genetic variations of diagnostic significance and to use these data in realtime genomic contact tracing and surveillance. Under this paradigm, unprecedented volumes of data are generated that require rapid analysis to provide meaningful inference. Methods We present a machine learning logistic regression pipeline that can assign classifications to genetic sequence data. The pipeline implements an intuitive and customizable approach to developing a trained prediction model that runs in linear time complexity, generating accurate output rapidly, even with incomplete data. Our approach was benchmarked against porcine respiratory and reproductive syndrome virus (PRRSv) and swine H1 influenza A virus (IAV) datasets. Trained classifiers were tested against sequences and simulated datasets that artificially degraded sequence quality at 0, 10, 20, 30, and 40%. Results When applied to a poor-quality sequence data, the classifier achieved between >85% to 95% accuracy for the PRRSv and the swine H1 IAV HA dataset and this increased to near perfect accuracy when using the full dataset. The model also identifies amino acid positions used to determine genetic clade identity through a feature selection ranking within the model. These positions can be mapped onto a maximum-likelihood phylogenetic tree, allowing for the inference of clade defining mutations. Discussion Our approach is implemented as a python package with code available at https://github.com/flu-crew/classLog .

Zeller, Michael A.↗