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At least 199 records · Page 11

MAPS of Cancer

Our goal was to produce an interactive visualization from a mathematical model that successfully predicts metastases from head and neck cancer. We met this goal early in the project. The visualization is available for the public to view. Our work appears to fill a need for more information about this deadly disease. The idea of this project was to make an easily interpretable visualization based on what we call "functional maps" of disease. A functional map is a graphic summary of medical data, where distances between parts of the body are determined by the probability of disease, not by anatomical distances. Functional maps often beat little resemblance to anatomical maps, but they can be used to predict the spread of disease. The idea of modeling the spread of disease in an abstract multidimensional space is difficult for many people. Our goal was to make the important predictions easy to see. NASA must face this problem frequently: how to help laypersons and professionals see important trends in abstract, complex data. We took advantage of concepts perfected in NASA's graphics libraries. As an analogy, consider a functional map of early America. Suppose we choose travel times, rather than miles, as our measures of inter-city distances. For Abraham Lincoln, travel times would have been the more meaningful measure of separation between cities. In such a map New Orleans would be close to Memphis because of the Mississippi River. St. Louis would be close to Portland because of the Oregon Trail. Oklahoma City would be far from Little Rock because of the Cheyenne. Such a map would look puzzling to those of us who have always seen physical maps, but the functional map would be more useful in predicting the probabilities of inter-site transit. Continuing the analogy, we could predict the spread of social diseases such as gambling along the rivers and cattle rustling along the trails. We could simply print the functional map of America, but it would be more interesting to show meaningful patterns of dispersal. We had previously published the functional map of the head and neck, but it was difficult to explain to either patients or surgeons because that view of our body did not resemble anatomy. This discrepancy between functional and physical maps is just a mathematical restatement of the well-known fact that some diseases, such as head and neck cancer, spread in complex patterns, not always to the next nearest site. We had discovered that a computer could re-arrange anatomy so that this particular disease spreads to the next nearest site. The functional map explains over 95% of the metastases in 1400 patients. In a sense, we had graphed what our body "looks like" to a tumor. The tumor readily travels between adjacent areas in the functional map. The functional map is a succinct visual display of trends that are not easily appreciated in tables of probabilities.

Gray, Lincoln↗

CAPRI: Using a Geometric Foundation for Computational Analysis and Design

CAPRI (Computational Analysis Programming Interface) is a software development tool intended to make computerized design, simulation and analysis faster and more efficient. The computational steps traditionally taken for most engineering analysis (Computational Fluid Dynamics (CFD), structural analysis, etc.) are: Surface Generation, usually by employing a Computer Aided Design (CAD) system; Grid Generation, preparing the volume for the simulation; Flow Solver, producing the results at the specified operational point; Post-processing Visualization, interactively attempting to understand the results. It should be noted that the structures problem is more tractable than CFD; there are fewer mesh topologies used and the grids are not as fine (this problem space does not have the length scaling issues of fluids). For CFD, these steps have worked well in the past for simple steady-state simulations at the expense of much user interaction. The data was transmitted between phases via files. In most cases, the output from a CAD system could go IGES files. The output from Grid Generators and Solvers do not really have standards though there are a couple of file formats that can be used for a subset of the gridding (i.e. PLOT3D) data formats and the upcoming CGNS). The user would have to patch up the data or translate from one format to another to move to the next step. Sometimes this could take days. Instead of the serial approach to analysis, CAPRI takes a geometry centric approach. CAPRI is a software building tool-kit that refers to two ideas: (1) A simplified, object-oriented, hierarchical view of a solid part integrating both geometry and topology definitions, and (2) programming access to this part or assembly and any attached data. The connection to the geometry is made through an Application Programming Interface (API) and not a file system.

Haimes, Robert↗

JMISR INteractive eXplorer

MISR (Multi-angle Imaging SpectroRadiometer) INteractive eXplorer (MINX) is an interactive visualization program that allows a user to digitize smoke, dust, or volcanic plumes in MISR multiangle images, and automatically retrieve height and wind profiles associated with those plumes. This innovation can perform 9-camera animations of MISR level-1 radiance images to study the 3D relationships of clouds and plumes. MINX also enables archiving MISR aerosol properties and Moderate Resolution Imaging Spectroradiometer (MODIS) fire radiative power along with the heights and winds. It can correct geometric misregistration between cameras by correlating off-nadir camera scenes with corresponding nadir scenes and then warping the images to minimize the misregistration offsets. Plots of BRF (bidirectional reflectance factor) vs. camera angle for points clicked in an image can be displayed. Users get rapid access to map views of MISR path and orbit locations and overflight dates, and past or future orbits can be identified that pass over a specified location at a specified time. Single-camera, level-1 radiance data at 1,100- or 275- meter resolution can be quickly displayed in color using a browse option. This software determines the heights and motion vectors of features above the terrain with greater precision and coverage than previous methods, based on an algorithm that takes wind direction into consideration. Human interpreters can precisely identify plumes and their extent, and wind direction. Overposting of MODIS thermal anomaly data aids in the identification of smoke plumes. The software has been used to preserve graphical and textural versions of the digitized data in a Web-based database.

Nelson, David L.↗

Facility Targeting, Protection and Mission Decision Making Using the VISAC Code

The Visual Interactive Site Analysis Code (VISAC) has been used by DTRA and several other agencies to aid in targeting facilities and to predict the associated collateral effects for the go, no go mission decision making process. VISAC integrates the three concepts of target geometric modeling, damage assessment capabilities, and an event/fault tree methodology for evaluating accident/incident consequences. It can analyze a variety of accidents/incidents at nuclear or industrial facilities, ranging from simple component sabotage to an attack with military or terrorist weapons. For nuclear facilities, VISAC predicts the facility damage, estimated downtime, amount and timing of any radionuclides released. Used in conjunction with DTRA's HPAC code, VISAC also can analyze transport and dispersion of the radionuclides, levels of contamination of the surrounding area, and the population at risk. VISAC has also been used by the NRC to aid in the development of protective measures for nuclear facilities that may be subjected to attacks by car/truck bombs.

Morris, Robert H.↗

NASA Tech Briefs, June 2012

Topics covered include: iGlobe Interactive Visualization and Analysis of Spatial Data; Broad-Bandwidth FPGA-Based Digital Polyphase Spectrometer; Small Aircraft Data Distribution System; Earth Science Datacasting v2.0; Algorithm for Compressing Time-Series Data; Onboard Science and Applications Algorithm for Hyperspectral Data Reduction; Sampling Technique for Robust Odorant Detection Based on MIT RealNose Data; Security Data Warehouse Application; Integrated Laser Characterization, Data Acquisition, and Command and Control Test System; Radiation-Hard SpaceWire/Gigabit Ethernet-Compatible Transponder; Hardware Implementation of Lossless Adaptive Compression of Data From a Hyperspectral Imager; High-Voltage, Low-Power BNC Feedthrough Terminator; SpaceCube Mini; Dichroic Filter for Separating W-Band and Ka-Band; Active Mirror Predictive and Requirement Verification Software (AMP-ReVS); Navigation/Prop Software Suite; Personal Computer Transport Analysis Program; Pressure Ratio to Thermal Environments; Probabilistic Fatigue Damage Program (FATIG); ASCENT Program; JPL Genesis and Rapid Intensification Processes (GRIP) Portal; Data::Downloader; Fault Tolerance Middleware for a Multi-Core System; DspaceOgreTerrain 3D Terrain Visualization Tool; Trick Simulation Environment 07; Geometric Reasoning for Automated Planning; Water Detection Based on Color Variation; Single-Layer, All-Metal Patch Antenna Element with Wide Bandwidth; Scanning Laser Infrared Molecular Spectrometer (SLIMS); Next-Generation Microshutter Arrays for Large-Format Imaging and Spectroscopy; Detection of Carbon Monoxide Using Polymer-Composite Films with a Porphyrin-Functionalized Polypyrrole; Enhanced-Adhesion Multiwalled Carbon Nanotubes on Titanium Substrates for Stray Light Control; Three-Dimensional Porous Particles Composed of Curved, Two-Dimensional, Nano-Sized Layers for Li-Ion Batteries 23 Ultra-Lightweight; and Ultra-Lightweight Nanocomposite Foams and Sandwich Structures for Space Structure Applications.

Source record↗

Extending the Lunar Mapping and Modeling Portal - New Capabilities and New Worlds

NASA's Lunar Mapping and Modeling Portal (LMMP) provides a web-based Portal and a suite of interactive visualization and analysis tools to enable mission planners, lunar scientists, and engineers to access mapped lunar data products from past and current lunar missions (http://lmmp.nasa.gov). During the past year, the capabilities and data served by LMMP have been significantly expanded. New interfaces are providing improved ways to access and visualize data. At the request of NASA's Science Mission Directorate, LMMP's technology and capabilities are now being extended to additional planetary bodies. New portals for Vesta and Mars are the first of these new products to be released. This presentation will provide an overview of LMMP, Vesta Trek, and Mars Trek, demonstrate their uses and capabilities, highlight new features, and preview coming enhancements.

Site Selection↗

Mars Trek: An Interactive Web Portal for Current and Future Missions to Mars

NASA's Mars Trek (https://marstrek.jpl.nasa.gov) provides a web-based Portal and a suite of interactive visualization and analysis tools to enable mission planners, lunar scientists, and engineers to access mapped data products from past and current missions to Mars. During the past year, the capabilities and data served by Mars Trek have been significantly expanded beyond its original design as a public outreach tool. At the request of NASA's Science Mission Directorate and Human Exploration Operations Mission Directorate, Mars Trek's technology and capabilities are now being extended to support site selection and analysis activities for the first human missions to Mars.

Mars Trek↗

NASA's Solar System Treks: Online Portals for Planetary Mapping and Modeling

NASA's Solar System Treks are a suite of web-based of lunar and planetary mapping and modeling portals providing interactive visualization and analysis tools enabling mission planners, planetary scientists, students, and the general public to access mapped lunar data products from past and current missions for the Moon, Mars, Vesta, and more. New portals for additional planetary bodies are being planned. This presentation will recap significant enhancements to these toolsets during the past year and look ahead to future features and releases. Moon Trek is a new portal replacing its predecessor, the Lunar Mapping and Modeling Portal (LMMP), that significantly upgrades and builds upon the capabilities of LMMP. It features greatly improved navigation, 3D visualization, fly-overs, performance, and reliability. Additional data products and tools continue to be added. These include both generalized products as well as polar data products specifically targeting potential sites for NASA's Resource Prospector mission as well as for missions being planned by NASA's international partners. The latest release of Mars Trek includes new tools and data products requested by NASA's Planetary Science Division to support site selection and analysis for Mars Human Landing Exploration Zone Sites. Also being given very high priority by NASA Headquarters is Mars Trek's use as a means to directly involve the public in upcoming missions, letting them explore the areas the agency is focusing upon, understand what makes these sites so fascinating, follow the selection process, and get caught up in the excitement of exploring Mars. Phobos Trek, the latest effort in the Solar System Treks suite, is being developed in coordination with the International Phobos/Deimos Landing Site Working Group, with landing site selection and analysis for JAXA's MMX (Martian Moons eXploration) mission as a primary driver.

Day, Brian↗

Central Valley Water Resources II: Groundwater Sustainability Management Support in the California Central Valley using GRACE and InSAR Datasets

California’s Central Valley is one of the most productive agricultural regions in the United States, producing a fourth of the nation’s food supply. The water demand in this region is heavily dependent on groundwater resources, resulting in over pumping of aquifers at unsustainable rates during recent periods of severe drought. Over the past century, Central Valley aquifers have experienced a significant decline in groundwater levels, resulting in land subsidence and irreversible loss in groundwater storage. In 2014, the state enacted the Sustainable Groundwater Management Act, requiring high and medium priority subbasins to suspend overdraft and achieve sustainable levels of pumping and recharge by 2042.The California Department of Water Resources (DWR) oversees subbasin groundwater management; however, monitoring remains challenging due to sparse and inconsistent in situ data. To assist the DWR, this project developed a user-friendly executable application and an interactive visualization tool to quantify groundwater storage and land subsidence trends using remotely sensed and in situ data. The team utilized NASA’s Gravity Recovery and Climate Experiment (GRACE), GRACE Follow-On (GRACE-FO), Sentinel-1 C-band Synthetic Aperture Radar (C-SAR) interferograms, and Advanced Land Observing Satellite 2 (ALOS-2) Phased Array L-band Synthetic Aperture Radar 2 (PALSAR-2) interferograms in conjunction with well and GPS measurements to analyze groundwater and subsidence trends. GRACE and well data returns produced a strong Pearson correlation of .84, while Sentinel-1 and GPS data returns produced a Pearson correlation of .41 over the entire Central Valley. These findings suggest remotely sensed GRACE and interferometric SAR data can be used in the absence of in situ data.

DEVELOP Project Summary↗

Compositional Realizability Checking within FRET

A set of requirements for a reactive system is realizable if, for any sequence of inputs that satisfy the assumptions on the environment, the guarantees always hold. Realizability checking is essential to ensure that an implementation can be constructed that satisfies the requirements. We propose a framework that supports users in the non-trivial task of developing realizable requirements. Our framework uses architectural information to automatically de-compose a set of requirements into subsets that can be analyzed separately, and therefore more efficiently. It then integrates existing algorithms in order to detect unrealizability, identify minimal sets of conflicting requirements, and compute counterexamples. The capability to focus on minimal conflict sets is key for localizing and correcting the sources of unrealizability. Our approach supports this process by enabling users to interactively visualize and explore the produced conflict sets and counterexamples. We have implemented our framework in the open-source Formal Requirements Elicitation Tool (FRET), and have used it on a variety of industrial-level case studies, showcasing the strengths of our approach in terms of raw performance, as well as diagnostic potential.

FRET↗

1.4.2.402 - Water Risk for the Bulk Power System: Asset to Grid Impacts

Utilities and stakeholders need a standardized mechanism for evaluating how future climate and hydrologic conditions translate to water-related risks for power grid assets and systems to support planning decisions. Yet, no such mechanism exists. To address this need, our goals are to: (1) Develop and execute a state-of-the-art multi-model framework to assess future climate-water impacts and risks to the grid, including sensitivities to varying hydrologic drivers and infrastructure scenarios. (2) Create a standardized interactive visualization platform, using data from the climate-water risk assessments, that enables stakeholders to evaluate climate-water impacts, risks, and adaptation measures for power systems.

bulk power system↗

Flow visualization of vortex interactions in multiple vortex wakes behind aircraft

A flow visualization technique was developed which allows the nature of lift-generated wakes behind aircraft models to be investigated. The technique was applied to models being towed underwater in a ship model basin. Seven different configurations of a small-scale model of a 747 transport aircraft were used to allow observation of typical vortex interactions and merging in multiple vortex wakes. It was established that the motion of the wake vortices is often sensitive to small changes in either wing span loading or model attitude. Landing gear deployement was found to cause a far-field reformation of vorticity behind a model configuration which dissipated concentrated vorticity in the near-field wake. Alleviation of wake vorticity is achievable by configuring the wing span loading to cause the wake vortices to move in paths that result in their interactions and merging. The vortices shed from the horizontal stabilizer always moved down rapidly into the wake and merged with the other vortices, primarily the inboard flap vortices.

Ciffone, D. L.↗

Flow visualization of mast-mounted-sight/main rotor aerodynamic interactions

Flow visualization tests were conducted on a 27 percent-scale AH-64 attack helicopter model fitted with various mast-mounted-sight configurations in an attempt to identify the cause of adverse vibration encountered during full-scale flight tests of an Apache/Longbow configuration. The tests were conducted at the NASA Langley Research Center in the 14- by 22-Foot Subsonic Tunnel. A symmetric and an asymmetric mast-mounted-sight oriented at several skew angles were tested at forward and rearward flight speeds of 30 and 45 knots. A laser light sheet seeded with vaporized propylene glycol was used to visualize the wake of the sight in planes parallel and perpendicular to the freestream flow. Analysis of the flow visualization data identified the frequency of the wake shed from the sight, the angle-of-attack at the sight, and the location where the sight wake crossed the rotor plane. Differences in wake structure were observed between the various sight configurations and slew angles. Postulations into the cause of the adverse vibration found in flight test are given along with considerations for future tests.

Ghee, Terence A.↗

Interactive numerical flow visualization using stream surfaces

Particle traces and ribbons are often used to depict the structure of three-dimensional flowfields, but images produced using these models can be ambiguous. Stream surfaces offer a more visually intuitive method for the depiction of flowfields, but interactive response is needed to allow the user to place surfaces which reveal the essential features of a given flowfield. FLORA, a software package which supports the interactive calculation and display of stream surfaces on silicon graphics workstations, is described. Alternative methods for the integration of particle traces are examined, and calculation through computational space is found to provide rapid results with accuracy adequate for most purposes. Rapid calculation of traces is teamed with progressive refinement of appoximated surfaces. An initial approximation provides immediate user feedback, and subsequent improvement of the surface ensures that the final image is an accurate representation of the flowfield.

Hultquist, J. P. M.↗

PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R

Visual examination of mass spectrometry data is necessary to assess data quality and to facilitate data exploration. Graphics provide the means to evaluate spectral properties, test alternative peptide/protein sequence matches, prepare annotated spectra for publication, and fine-tune parameters during wet lab procedures. Visual inspection of MS data is hindered by proprietary proteomics visualization software designed for particular workflows and academic software that lack visualization tools. We built PSpecteR, an open-source and interactive R Shiny web application to address these issues, with support for several steps of proteomics data processing, including: reading various mass spectrometry files, running open-source database search tools, labelling spectra with fragmentation patterns, testing post-translational modifications, plotting where identified fragments map to reference sequences, and visualizing algorithmic output and metadata. All figures, tables, and spectra are exportable within one easy-to-use graphical user interface. Our current software provides a flexible and modern R framework to support fast implementation of additional features. The open source code is readily available (https://github.com/EMSL-Computing/PSpecteR), and a PSpecteR Docker container (https://hub.docker.com/r/emslcomputing) is available for easy local installation.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

hectorui: A web-based interactive scenario builder and visualization application for the Hector climate model

In a world of increasingly online, distributed, and diverse interdisciplinary research, there is a need to provide accessible and user-friendly interactive visualization tools that elucidate complex models and their output products. Hector UI is an R Shiny web interface built to extend the simple global climate model Hector (Hartin et al. 2015), originally designed in C++ with an accompanying R interface. Traditionally, Hector has only had a command line interface available which requires fluency in C++ or R and a full understanding of Hector’s parameter space to run the model and create output. Hector UI provides a fast, efficient solution that makes the model more accessible to a broader user base. This implementation allows users that may not be fluent in R or C++ to interactively explore model scenarios and outputs in an easy to use, guided point and click interface.

97 MATHEMATICS AND COMPUTING↗

LinkWinds, A System for Interactive Scientific Data Analysis and Visualization

The Linked Windows Interactive Data System is a prototype visual data exploration system resulting from a NASA/JPL program of research into graphical methods for rapidly and interactively accessing, displaying and analyzing large multivariate multidisciplinary data sets.

dynamic interconnection data-linking paradigm easy↗

Flow visualizations of perpendicular blade vortex interactions

Helium bubble flow visualizations have been performed to study perpendicular interaction of a turbulent trailing vortex and a rectangular wing in the Virginia Tech Stability Tunnel. Many combinations of vortex strength, vortex-blade separation (Z(sub s)) and blade angle of attack were studied. Photographs of representative cases are presented. A range of phenomena were observed. For Z(sub s) greater than a few percent chord the vortex is deflected as it passes the blade under the influence of the local streamline curvature and its image in the blade. Initially the interaction appears to have no influence on the core. Downstream, however, the vortex core begins to diffuse and grow, presumably as a consequence of its interaction with the blade wake. The magnitude of these effects increases with reduction in Z(sub s). For Z(sub s) near zero the form of the interaction changes and becomes dependent on the vortex strength. For lower strengths the vortex appears to split into two filaments on the leading edge of the blade, one passing on the pressure and one passing on the suction side. At higher strengths the vortex bursts in the vicinity of the leading edge. In either case the core of its remnants then rapidly diffuse with distance downstream. Increase in Reynolds number did not qualitatively affect the flow apart from decreasing the amplitude of the small low-frequency wandering motions of the vortex. Changes in wing tip geometry and boundary layer trip had very little effect.

Rife, Michael C.↗