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At least 199 records · Page 11

EGS Collab Experiment 2: Shear Stimulation ERT Monitoring Data

This repository contains the electrical resistivity tomography (ERT) monitoring data that was collected before, during, and after shear stimulation attempts were conducted at EGS Collab. These tests were carried out on the SURF 4100 level during Experiment 2 in March, 2022. Flow and stimulation data corresponding to this dataset are available in a different GDR dataset, which is linked below. Also included here are the E4D input files that were used to process the ERT data. E4D is an open source ERT monitoring and inversion code which is linked for use below.

15 GEOTHERMAL ENERGY↗

Influence of Agricultural Managed Aquifer Recharge (AgMAR) and Stratigraphic Heterogeneities on Nitrate Reduction in the Deep Subsurface

This data package contains input files for TOUGHREACT for a modeling study examining the effects of managed aquifer recharge on agricultural lands on nitrate cycling and transport in the Central Valley of CA near Modesto. The files contain all the geochemical species, reactions, and hydrological parameters for the model. The files are text files used for the TOUGH family of code created by LBNL. To use the files a license is required. https://tough.lbl.gov/licensing-download/toughreact-licensing-download/Accompanying Paper Abstract: Agricultural managed aquifer recharge (AgMAR) is a proposed management strategy whereby surface water flows are used to intentionally flood croplands with the purpose of recharging underlying aquifers. However, legacy nitrate (NO3-) contamination in agriculturally-intensive regions poses a threat to groundwater resources under AgMAR. To address these concerns, we use a reactive transport modeling framework to better understand the effects of AgMAR management strategies (i.e., by varying the frequency, duration between flooding events, and amount of water) on N leaching to groundwater under different stratigraphic configurations and antecedent moisture conditions. In particular, we examine the potential of denitrification and nitrogen retention in deep vadose zone sediments (~15 m) using variable AgMAR application rates on two-dimensional representations of differently textured soils, soils with discontinuous bands/channels, and soils with preferential flow paths characteristic of typical agricultural field sites. Our results indicate that finer textured sediments, such as silt loams, alone or embedded within high flow regions, are important reducing zones providing conditions needed for denitrification. Simulation results further suggest that applying water all-at-once rather than in increments for a fixed volume of recharge transports higher concentrations of NO3- deeper into the profile, which has the potential to exacerbate groundwater quality. This transport into deeper depths can be aggravated by wetter antecedent soil moisture conditions. However, applying water all-at-once also increases denitrification within the vadose zone by promoting anoxic conditions. We conclude that AgMAR management strategies can be designed to enhance denitrification in the subsurface and reduce N leaching to groundwater, while specifically accounting for lithologic heterogeneity, antecedent soil moisture conditions, and depth to the water table. Our findings are potentially relevant to other systems that experience flooding inundation such as riparian corridors, floodplains, wetlands, and other managed landscapes like dedicated recharge basins.

54 ENVIRONMENTAL SCIENCES↗

Model output from simulations of manganese-carbon interactions in temperate forest soil profiles

This archive contains model output, code, and scripts for simulations of coupled manganese-carbon cycling in temperate forest soil profiles. These model results were generated as part of a study investigating how manganese availability influences soil organic carbon stocks and demonstrating a new model framework for coupling carbon and manganese cycling. The simulations were in support of a manuscript: "Modeling interactive effects of manganese bioavailability, nitrogen deposition, and warming on soil carbon storage." The study addresses the research questions: How does Mn bioavailability, as driven by subsurface mineral properties, pH, and redox status, affect temperate forest soil organic carbon and litter carbon stocks?How is the relationship between Mn bioavailability and carbon cycling affected by changes in temperature and nitrogen deposition?"Model simulations were conducted in a reactive transport modeling framework using PFLOTRAN coupled to python. Multiple model simulations testing different Mn-bearing mineral solubilities, hydrological patterns, nitrogen deposition rates, and temperatures are included. Soil properties, including total and exchangeable Mn concentrations, are based on values reported for the Susquehanna Shale Hills Critical Zone Observatory (SSHCZO), a temperate forested watershed in central Pennsylvania, U.S.A where Mn cycling through vegetation has been documented.File formats include netCDF (.nc), python script (.py), shell script (.sh), plain text PFLOTRAN input file (.in), and plain text PFLOTRAN database file (.dat), and gzipped tar archive (tar.gz).

54 ENVIRONMENTAL SCIENCES↗

Data and scripts associated with a manuscript on residence time distribution simulation in two 10-kilometer long river sections

This data package is associated with the publication “On the Transferability of Residence Time Distributions in Two 10-km Long River Sections with Similar Hydromorphic Units” submitted to the Journal of Hydrology (Bao et al. 2024).Quantifying hydrologic exchange fluxes (HEFs) at the stream-groundwater interface, along with their residence time distributions (RTDs) in the subsurface, is crucial for managing water quality and ecosystem health in dynamic river corridors. However, directly simulating high-spatial resolution HEFs and RTDs can be a time-consuming process, particularly for watershed-scale modeling. Efficient surrogate models that link RTDs to hydromorphic units (HUs) may serve as alternatives for simulating RTDs in large-scale models. One common concern with these surrogate models, however, is the transferability of the relationship between the RTDs and HUs from one river corridor to another. To address this, we evaluated the HEFs and the resulting RTD-HU relationships for two 10-kilometer-long river corridors along the Columbia River, using a one-way coupled three-dimensional transient surface-subsurface water transport modeling framework that we previously developed. Applying this framework to the two river corridors with similar HUs allows for quantitative comparisons of HEFs and RTDs using both statistical tests and machine learning classification models. This data package includes the model inputs files and the simulation results data. This data package contains 10 folders. The modeling simulation results data are in the folders 100H_pt_data and 300area_pt_data, for the study domain Hanford 100H and 300 area respectively. The remaining eight folders contain the scripts and data to generate the manuscript figures. The file-level metadata file (Bao_2024_Residence_Time_Distribution _flmd.csv) includes a list of all files contained in this data package and descriptions for each. The data dictionary file (Bao_2024_Residence_Time_Distribution _dd.csv) includes column header definitions and units of all tabular files.

54 ENVIRONMENTAL SCIENCES↗

Data and Scripts associated with a manuscript on ecosystem responses to wildfires in the Columbia River Basin

This data package is associated with the publication “Ecosystem leaf area, gross primary production, and evapotranspiration responses to wildfire in the Columbia River Basin” submitted to Biogeosciences (Shi et al., 2024; doi: 10.22541/au.171053013.30286044/v1). In this research, data products, leaf area index (LAI), gross primary production (GPP), and evapotranspiration (ET), from the Moderate Resolution Imaging Spectroradiometer (MODIS) are used to quantify the resistance and resilience of different ecosystem types in the Columbia River Basin (CRB). A machine learning algorithm, random forest (RF), was used to examine the impacts of precipitation, vapor pressure deficit (VPD), and burn severity from Monitoring Trends in Burn Severity (MTBS) on ecosystem resilience. The data package includes the processed MODIS data products, precipitation, VPD, and burn severity in 138 fire regions in CRB and the input files for RF model training. This data package includes six folders. The MODIS products are included in three MODIS_* folders with shell scripts for data clipping and *ncl files for data processing: (1) “/MODIS_LAI_CRB”; (2) “/MODIS_GPP_CRB”; and (3) “/MODIS_ET_CRB”. All the processed data for each fire event are NetCDF formatted. The MTBS burn severity data and the shell and *ncl scripts used for data processing are in the folder named (4) “MTBS_fire”. The ERA meteorological fields and the data processing scritps are in (5) “ERA_Var_CR”. All the scripts for figure development are in the format of *ncl and in the folder (6) “paper_scripts”. See the file ending in “flmd.csv” for a list of all files contained in this data package and descriptions for each. Tabular column headers and units are described in the data dictionary file ending in “dd.csv”.

54 ENVIRONMENTAL SCIENCES↗

Manuscript model outputs, model source code, and figure scripts: The role of geomorphology in mediating biomass allocation impacts on salt-marsh resilience and carbon accumulation

This data package provides model source code (C++), model outputs, and figure generation scripts (R) needed to reproduce the following manuscript: Bruns, Nicholas E., Genevieve L. Noyce, and Matthew L. Kirwan. "The Role of Geomorphology in Mediating Biomass Allocation Impacts on Salt-Marsh Resilience and Carbon Accumulation." Estuarine, Coastal and Shelf Science 327 (December 2025): 109549. https://doi.org/10.1016/j.ecss.2025.109549. This manuscript investigates how geomorphology mediates the impact of biomass allocation shifts on salt marsh persistence and carbon (C) sequestration under sea level rise. We use a 1-D soil-column model (Kirwan and Mudd 2012) to perform experiments across a range of static root:shoot ratios (RSR = 1-4) spanning observed values. The model explicitly simulates interactions between tidal inundation, productivity, inorganic sediment deposition, and organic matter accumulation. Experiments determine whether geomorphic feedbacks amplify, dampen, or leave unchanged the ecosystem response to biomass allocation shifts. A first experiment uses constant sea level rise (2.5 mm/yr) to examine equilibrium dynamics and their influence on carbon accumulation rates across different suspended sediment concentrations (SSC). A second set of experiments calculates threshold sea level rise rates for marsh drowning across RSR and SSC combinations. Final experiments apply accelerating sea level rise scenarios (2000-2200) derived from NOAA projections (Sweet et al. 2022) to generate an envelope of expected responses, quantifying the importance of biomass allocation shifts on marsh carbon accumulation and persistence. All experiments are repeated across SSC ranging from 5-50 mg/L to investigate how these interactions vary in micro-tidal marshes with different sediment supplies. Package contents: * README.txt with detailed description of package contents and instructions for reproducing manuscript figures and model outputs * R scripts for generating all manuscript figures * C++ baseline model code from Kirwan and Mudd (2012) * C++ source code for 4 experimental model variants used in the manuscript, extending above baseline code * Model input files (.csv, .txt) including sea level rise scenarios * Model output files (.txt) used in manuscript analyses Temporal coverage: Model simulations span years 1900-2200, with accelerating sea level rise scenarios for 2000-2200. Key variables: Root:shoot ratio, suspended sediment concentration, carbon accumulation rate, vertical accretion rate, marsh elevation, inundation depth, threshold sea level rise rate.

54 ENVIRONMENTAL SCIENCES↗

Data from: "Towards CONUS-Wide ML-Augmented Conceptually-Interpretable Modeling of Catchment-Scale Precipitation-Storage-Runoff Dynamics"

This data package was generated to support the manuscript “Towards CONUS-Wide Machine Learning-Augmented Conceptually Interpretable Modeling of Catchment-Scale Precipitation-Storage-Runoff Dynamics.” It provides input files, model outputs, plotting data, scripts, notebooks, and documentation used to develop, evaluate, and reproduce Mass-Conserving Perceptron (MCP)-based hydrologic modeling experiments across 513 selected Catchment Attributes and Meteorology for Large-sample Studies in the United States (CAMELS-US) basins. The files are organized by modeling component and analysis purpose, including rainfall–runoff experiments, snow module experiments, coupled hydrologic-snow experiments, Long Short-Term Memory (LSTM) benchmark results, model skill metrics, initialization and epoch records, cell-state normalization files, Akaike Information Criterion (AIC)-based model comparison files, and data used to generate manuscript figures. Tabular files can be opened using standard spreadsheet software or Python/R data-analysis tools. Python scripts, Jupyter notebooks, and selected MATLAB scripts are included for model execution, postprocessing, plotting, and statistical analysis. Quality assurance and quality control were conducted through the source-data selection and modeling workflow. Meteorological forcing, streamflow, and static catchment attributes were derived from the CAMELS-US dataset, and snow water equivalent data were derived from the University of Arizona (UA) Snow Water Equivalent dataset. Selected basins and time periods were screened during the associated research workflow to avoid missing observations or poor-quality cases. Static geospatial features were processed primarily using Quantum Geographic Information System (QGIS) and Geospatial Data Abstraction Library (GDAL) workflows. Additional details are provided in the associated manuscript and documentation.

ESS-DIVE CSV File Formatting Guidelines Reporting ↗

Nanoporous Tio2 Water Training Data

Data and input files used to train a Deep Potential (DP) model for the nanoporous TiO2-water interface. The DeepMD-kit code was used to train the DP. Information about data format, and how to use DeepMD-kit can be found at https://docs.deepmodeling.com/projects/deepmd/en/master/

08 HYDROGEN↗

RIKEN TRIP Magnets Database

This dataset contains ab-initio calculation results for the temperature-dependent anomalous Hall conductivity, the anomalous Nernst effect, and the Seebeck coefficient. All calculations are based on ab-inito Quantum Espresso (PWSCF v.6.3) + Wannier90 (v.3.0.0). The dependence on carrier doping is also calculated. For all calculations a ferromagnetic order has been assumed, which might not correspond to the true ground state of the system. Tabulated values for the magnetic moments and essential input files for Quantum Espresso are available for download as attachments. This project has been supported by the RIKEN Transformative Research Innovation Platform (TRIP), Use Case: Many-body Electron Systems.

36 MATERIALS SCIENCE↗

LANL Critical Benchmark Comparison Study and Subsequent Revision

As part of an international collaboration within the DOE Nuclear Criticality Safety Program (NCSP), LANL is involved in a comparison study to quantify differences in k-effective results from neutron transport simulations of critical benchmark experiments. The DOE NCSP Mission and Vision details the activity in which the French Institut De Radioprotection et De Sûreté Nucléaire (IRSN) leads the study with LANL and in conjunction with ORNL and LLNL to compare results of various neutron transport codes and nuclear data libraries to compute k-effective for ICSBEP benchmarks held in common by the entities. This report documents results obtained through partial completion of the overall effort with a focus on the changes made to LANL benchmarks modeled with MCNP6 using ENDF/B-VII.1 nuclear data that appeared to have discrepant results when compared with results of other codes. The feedback received through participation in the comparison collaboration has prompted an effort to review particular input files for benchmarks and revise when necessary. This report documents the results of review and revision of specific benchmarks highlighted as possibly discrepant in the comparison study. In addition, this effort prompted a new collaboration between LANL XCP and NCS Divisions in the development of a shared review/revision procedure and use of a new benchmark repository.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Re-Release of the ENDF/B VIII.0 S(α,β) Data Processed by NJOY2016

“ENDF/B-VIII.0 provides a major update to the ENDF thermal scattering library. Indeed, it is nearly a completely new sub-library. Only the legacy evaluations for Al, Fe, liquid and solid methane, ortho- and para- hydrogen and deuterium and benzene and the ENDF/B-VII.1 evaluations for SiO2 are unchanged.” Thirty-four (34) materials are provided in ENDF/B-VIII.0 with a total of two hundred and fifty-three (253) evaluations. LEAPR input files are also included for each of the materials as well as “readme” files for most of the materials. All of these 34 thermal scattering files have been re-processed with NJOY2016 (version 53) to produce 253 ACE files suitable for use in MCNP or other similar codes. Table 1 lists the 34 materials which are included in the ENDF/B-VIII.0 thermal scattering library and also notes where major changes have occurred in the re-release.

36 MATERIALS SCIENCE↗

Aeroacoustics Noise Model of OpenFAST

The report describes theory and application of a newly released module of OpenFAST to simulate the aeroacoustic noise generated by the rotor of an arbitrary wind turbine. OpenFAST is a fully open-source publicly available wind turbine analysis tool actively developed at the National Renewable Energy Laboratory. The aeroacoustic module, which is also fully open-source and publicly available, is based on work performed over the past three decades. Frequency-based models for turbulent inflow, turbulent boundary layer – trailing edge, laminar boundary layer – vortex shedding, tip vortex, and trailing edge bluntness – vortex shedding noise mechanisms are included. A simple directivity model is also included. The appendices of this report describe in detail the inputs to the module and how to find them in the input files of OpenFAST. The noise models are exercised simulating the aeroacoustic noise emissions of the IEA Wind Task 37 land-based reference wind turbine. A code-to-code comparison between the implementation presented here and the implementation available at the Wind Energy Institute of the Technical University of Munich, Germany, is also presented.

17 WIND ENERGY↗

AniMACCS User Guide

This SAND Report provides an overview of AniMACCS, the animation software developed for the MELCOR Accident Consequence Code System (MACCS). It details what users need to know in order to successfully generate animations from MACCS results, to include information on the capabilities, requirements, testing, limitations, input settings, and problem reporting instructions for AniMACCS version 1.3. Supporting information is provided in the appendices, such as guidance on required input files using both WinMACCS and running MACCS from the command line. This page left blank

97 MATHEMATICS AND COMPUTING↗

Recalculation of Soil Bulk Density Used in the Scorpius MCNP6 Model

The soil composition used in the Scorpius MCNP6.2 (Ref. 1) model was recently recalculated. Originally, it was “determined using the United States Geological Survey (USGS) Mercury Core Library and the Nevada National Security Site U.S. Geological Survey Databases (NNSS USGS) and Nevada National Security Site Petrographic, Geochemical, and Geophysical Database (NNSS PGG),” but the details had been lost. Reference 2 documents the updated soil composition determination. Reference 2 estimated the grain density of the soil instead of the bulk density. This report corrects that error. I am indebted to Garrett Euler (EES-17) for reading Ref. 2, pointing out its errors, and guiding me through the correct calculations. This report is organized as follows. For completeness, the composition calculations from Ref. 2 are repeated: Sec. II discusses the data that are reported in the PGG Access database, and Sec. III uses the data in the PGG Access database to compute the composition of the soil. Section IV estimates the bulk density of the soil. Section V evaluates the soil wall thickness in the Scorpius model. Section VI estimates the effect of the soil density change on previously calculated results. Section VII presents a summary and conclusions. Input files and output files are listed in appendices.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Including 238 U(n,f)/ 235 U(n,f) and 239 Pu(n,f)/ 235 U(n,f) NIFFTE fission TPC Cross-sections into the Neutron Data Standards Database

The primary purpose of this report is to document how the 238 U/ 235 U and 239 Pu/ 235 U neutron induced fission cross-section ratios, 238 U(n,f)/ 235 U(n,f) and 239 Pu(n,f)/ 235 U(n,f), respectively, measured by the NIFFTE fission Time Projection Chamber (fissionTPC) were included in the most recent database (termed GMA) underlying Neutron Data Standards (NDS) evaluations. This report shows and discusses NDS input files, and underlying assumptions regarding the uncertainty estimate and necessary for including these data. This uncertainty estimate and the resulting files were based on information provided by fissionTPC experimentalists, R.J.Casperson, N.S. Bowden, L. Snyder and K.T. Schmitt for the 238 U ratio, and by L. Snyder for the 239 Pu ratio. The fissionTPC data were included twice, by D. Neudecker and V. Pronyaev, to counter-check results and exclude possible mistakes in their inclusion. It is shown in both evaluations that including fissionTPC 239 Pu(n,f)/ 235 U(n,f) data points to a lower evaluated 239 Pu(n,f) cross section above 10 MeV than the currently released NDS data. This raises the question whether a part of a previous dataset by Tovesson et al., that was previously rejected above 13 MeV for having low values, should be included in the NDS evaluation after all. The evaluated 238 U(n,f) cross section only changes significantly close to the threshold. The impact on the 235 U(n,f) cross section is minimal. fissionTPC data reduce evaluated uncertainties on both observables by 0–12% of the GMA evaluated uncertainties. However, the currently released NDS data contain in addition to these GMA evaluated uncertainties “Unrecognized Sources of Uncertainties” (USU) of 1.2%. It needs to be further discussed within the NDS project, whether the new fissionTPC data should also reduce USU.

238U(n,f)/235U(n,f)↗

A New MCNP6 Electron-Photon Transport Validation Test: The Lockwood Energy Deposition Experiment (V.1.0)

This memo announces the availability of a new validation test for quantifying the accuracy of the MCNP6 electron-photon transport algorithm for use in energy-deposition calculations. Specifically, energy-deposition results are compared with the Lockwood energy-deposition experiment. The comparison includes energy-deposition profiles in a variety of different single-element materials including beryllium, aluminum, carbon, copper, iron, molybdenum, tantalum, and uranium for pencil beam electron sources with energies including 0.05-, 0.1-, 0.3-, 0.5, and 1-MeV and angles of incidence including normal, 30°, and 60° off-normal. The purpose of this memo is to discuss the contents of the Lockwood validation directory and to outline the procedure for generating the input files, running the tests, processing the results, and comparing results to the experimental and numerical benchmark. Each step is mostly automated by a makefile that executes the necessary perl script.

74 ATOMIC AND MOLECULAR PHYSICS↗

Sensitivity Analysis of MFiX-PIC Parameters Using Nodeworks, PSUADE, and DAKOTA

The study presented in this report was aimed to demonstrate UQ analysis performed not only with Nodeworks, but also two other well-established UQ software tools from the U.S. DOE’s National Laboratories (PSUADE from Lawrence Livermore National Laboratory and DAKOTA from Sandia National Laboratory). It is important to emphasize that the motivation of this study was not to determine the best UQ software, but to verify if the global sensitivity analyses from the end-to-end workflow in Nodeworks are consistent with the results of other two UQ software. The components of Nodeworks from Python’s ecosystem have been tested as standalone libraries. However, an assessment study for the complete workflow targeting a specific UQ analysis has not been performed for Nodeworks. Hence, this study is expected to serve as an equivalent of solution verification for Nodeworks using other established UQ tools as reference solution. For this purpose, three distinct flow configurations (i.e., settling bed, bubbling fluidized, and circulating fluidized bed) have been used as representative multiphase flow problems of interest. The results of the systematic simulation campaigns performed in an earlier study using the particle-in-cell (PIC) approach in the Multiphase Flow with Interphase eXchanges (MFIX) suite of solvers (i.e., MFiX-PIC) was utilized. The same set of tabulated results was provided as input to the different UQ software for global sensitivity analysis. Results for the three cases indicate that based on the Sobol’ Sensitivity Indices method the order of importance ranking determined by Nodeworks for the Sobol’ Total Sensitivity Indices is consistent with PSUADE and DAKOTA in each case for the five model parameters considered. The input files for Nodeworks for the three cases are also shared through NETL’s Gitlab repository for the reader interested in reproducibility and further analysis (See Section 1.2).

97 MATHEMATICS AND COMPUTING↗

OpenSesame tutorial

OpenSesame is a program for generating tabular equations of state (EOS), with capabilities for multiphase EOS construction. In this tutorial, we provide an overview of how to run OpenSesame to construct a multiphase EOS. We discuss some general features of OpenSesame, followed by a description of sample input files required for multiphase EOS construction. We also discuss how to extract data from EOS tables in order to compare to experimental data, with an example using the OpenSesame GUI. Lastly, we provide a description of how to generate ASCII-formatted EOS tables most often used by hydro code users.

97 MATHEMATICS AND COMPUTING↗