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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors

Abstract TGA (TGACG-binding) transcription factors, which bind their target DNA through a conserved basic region leucine zipper (bZIP) domain, are vital regulators of gene expression in salicylic acid (SA)-mediated plant immunity. Here, we investigated the role of StTGA2.1, a potato (Solanum tuberosum) TGA lacking the full bZIP, which we named a mini-TGA. Such truncated proteins have been widely assigned as loss-of-function mutants. We, however, confirmed that StTGA2.1 overexpression compensates for SA-deficiency, indicating a distinct mechanism of action compared with model plant species. To understand the underlying mechanisms, we showed that StTGA2.1 can physically interact with StTGA2.2 and StTGA2.3, while its interaction with DNA was not detected. We investigated the changes in transcriptional regulation due to StTGA2.1 overexpression, identifying direct and indirect target genes. Using in planta transactivation assays, we confirmed that StTGA2.1 interacts with StTGA2.3 to activate StPRX07, a member of class III peroxidases (StPRX), which are known to play role in immune response. Finally, via structural modeling and molecular dynamics simulations, we hypothesized that the compact molecular architecture of StTGA2.1 distorts DNA conformation upon heterodimer binding to enable transcriptional activation. This study demonstrates how protein truncation can lead to distinct functions and that such events should be studied carefully in other protein families.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1973

Antimatter in the universe

The means of detecting the presence of antimatter in the universe are discussed. Both direct, annihilation processes, and indirect, cosmic ray particles, were analyzed. All results were negative and it was concluded that no antimatter exists, if the universe is in fact symmetric. If the universe is not symmetric then matter and antimatter are well separated from each other.

Stigman, G.↗
NASA NTRS1991

Water in dense molecular clouds

The G.P. Kuiper Airborne Observatory (KAO) was used to make initial observations of the half-millimeter ground-state transition of water in seven giant molecular clouds and in two late-type stars. No significant detections were made, and the resulting upper limits are significantly below those expected from other, indirect observations and from several theoretical models. The implied interstellar H2O/CO abundance is less than 0.003 in the cores of three giant molecular clouds. This value is less than expected from cloud chemistry models and also than estimates based on HDO and H3O(+) observations.

Wannier, P. G.↗
NASA NTRS1980

HEAO 1 observations of active coronae in main-sequence and subgiant stars

The HEAO 1 data has been searched for evidence of X-ray emission from 105 bright late-type stars of luminosity classes IV and V, selected on the basis of indirect optical evidence of the presence of a hot corona. Six of the target stars were detected at the 3-standard deviation level and 15 were coincident with 2-standard deviation X-ray sources. On a statistical basis no more than 5 of these 21 sources are spurious, and the probability that the identification with the class of active chromosphere stars is spurious is less than 0.00001. The sources lie near a line of X-ray/bolometric luminosity ratio = 0.0001, similar to a solar plage, and it is concluded that the most active coronae of late-type stars which are not members of close binary systems are being observed. The RS CVn systems discovered to date seem to form a distinct class of coronal X-ray sources, but the lowest X-ray luminosity members of the group, of which Capella may be the prototype, appear to overlap the domain of these single stars with active coronae. The data do not fit the coronal model of Gorenstein and Tucker (1976), but they are consistent with the coronal loop model of Rosner et al. (1978) as extended by Walter et al. (1980).

Walter, F. M.↗
NASA NTRS1990

Radiative thermal conduction fronts

The discovery of the O VI interstellar absorption lines in our Galaxy by the Copernicus observatory was a turning point in our understanding of the Interstellar Medium (ISM). It implied the presence of widespread hot (approx. 10 to the 6th power K) gas in disk galaxies. The detection of highly ionized species in quasi-stellar objects' absorption spectra may be the first indirect observation of this hot phase in external disk galaxies. Previous efforts to understand extensive O VI absorption line data from our Galaxy were not very successful in locating the regions where this absorption originates. The location at interfaces between evaporating ISM clouds and hot gas was favored, but recent studies of steady-state conduction fronts in spherical clouds by Ballet, Arnaud, and Rothenflug (1986) and Bohringer and Hartquist (1987) rejected evaporative fronts as the absorption sites. Researchers report here on time-dependent nonequilibrium calculations of planar conductive fronts whose properties match well with observations, and suggest reasons for the difference between the researchers' results and the above. They included magnetic fields in additional models, not reported here, and the conclusions are not affected by their presence.

Borkowski, Kazimierz J.↗
NASA NTRS2011

Exoplanetary Science: Instrumentation, Observations, and Expectations

More than 700 exoplanets have been discovered and studied using indirect techniques, leading our field into the exciting new era of comparative exoplanetology. However, the direct detection of exoplanetary systems still remains at the sensitivity limits of both ground- and space-based observatories. The development of new technologies for adaptive optics systems and high contrast instruments continues to increase the ability to directly study exoplanets. The scientific impact of these developments has promising prospects for both short and long timescales. In my talk, I will discuss recent highlights from the SEEDS survey and the current instrumentation in use at the Subaru telescope. SEEDS is a high contrast imaging strategic observing program with 120 nights of time allocated at the NAOJ's flagship optical and infrared telescope. I will also describe new instrumentation I designed to improve the SEEDS capabilities and efficiency. Finally, I will briefly discuss the conceptual design of a transiting planet camera to fly as a potential second generation instrument on-board NASA's SOFIA observatory.

McElwain, Michael↗
NASA NTRS2020

The Spectral Radiance of Indirectly Illuminated Surfaces in Regions of Permanent Shadow on the Moon

Regions of permanent shadow at the lunar poles have been suggested to host water ice and potentially other volatile compounds owing to their extremely low temperatures. Imaging in permanent shadow using indirect lighting from nearby topographic highs illuminated by the Sun has demonstrated the feasibility of optical remote sensing of permanent shadow surfaces, and a near-IR detection of water ice spectral features demonstrates the ability to collect usable spectroscopic data. The infrared emission of the lunar surface is largely in radiative equilibrium, so the temperature of surfaces in permanent shadow is driven by the intensity of the indirect illumination. This means that surfaces at very low temperatures, of high interest owing to their ability to trap and retain volatile compounds, will be the most challenging to measure. We provide estimates of indirect spectral radiance as a function of permanent shadow temperature from 400 nm to 14 μm using empirical data on permanent shadow temperature and broadband visible and near IR radiance, coupled with known reflectance properties of lunar materials. The relationships show there is ample radiance and photon radiance for reflectance imaging and spectroscopy from 400 nm to 8 μm at temperatures of regions of permanent shadow above 60K with appropriately designed instruments. Beyond 8 μm lunar spectral properties reduce the available radiance substantially, making reflectance observations challenging.

P. G. Lucey↗
NASA NTRS1981

Prospects for detecting other planetary systems

Prospects for the detection of extrasolar planetary systems using ground and space-based techniques are surveyed. The likely observable manifestations of another planetary system are considered, including angular displacements in stellar position, Doppler shifts in stellar radiation and stellar dimming due to the transit of an unseen companion (indirect techniques), and direct evidence of the thermal and reflected components of planetary radiation. The current status and prospects for future improvement of ground-based detection based on astrometric and radial velocity measurements are reviewed, and the limitations of future space-based systems that may be used in astrometric or direct searches for other planetary systems, the IRAS and the Space Telescope, are discussed. It is concluded that a comprehensive search program must involve both ground- and space-based instruments.

Black, D. C.↗
NASA NTRS1994

The Circumstellar Imager: Direct detection of extra-solar planetary systems

The Astrometric Imaging Telescope (AIT) is designed to probe the circumstellar environment by both direct imaging and indirect astrometric measurements. The Circumstellar Imager (CI) is a coronagraphic camera and is the direct imaging component of the AIT. The CI is designed to obtain high-sensitivity images of the circumstellar region. It provides crucial non-inferential information relating to the frequency, origin, and evolution of planetary systems and all forms of circumstellar matter. Such imaging is usually limited by the scattered and diffracted light halos of the star itself, which are greatly suppressed in the CI by mating a novel high-efficiency coronagraph with a phase-compensated optical system. For faint point sources in the circumstellar region, the CI will have a sensitivity in excess of 5 magnitudes fainter than the as-designed Hubble Space Telescope (HST). Laboratory data are shown for the coronagraph, which, in a diffraction-limited environment, is capable of suppressing the stellar diffraction sidelobes by several orders of magnitude without significant sacrifice of field of view. In order to realize the high rejection levels inherent in the coronagraph design, it is necessary to limit scatter in the optical systems, imposing a mid-spatial frequency figure error requirement an order of magnitude smaller than that of the HST. Experimental data directed toward meeting this requirement are also shown.

Ftaclas, Christ↗
DOE OSTI2021

Using onset times from frequent geophysical surveys to understand reservoir fluid flow and to estimate flow properties

Seismic characterization of flow properties is a difficult prospect, due to the indirect relationship between permeability and seismic velocity and attenuation. At best, seismic time-lapse changes can detect the effects of saturation and pressure changes in a reservoir due to fluid flow. Even in this case, the interpretation of the seismic observation in terms of the state of the reservoir depends intimately on the properties of the rock physics model, which are usually poorly known. The onset time, the calendar time of geophysical changes, provides an alternative datum for characterizing properties such as reservoir permeability. The main advantage of an onset time is that it is sensitive to the flow properties of the reservoir yet insensitive to the details of the rock physics model. Two examples of the utility of onset times are discussed: The use of travel time shifts induced by the injection of carbon dioxide between two wells, and the time-lapse time shifts for elastic waves propagating through a reservoir undergoing enhanced oil recovery. In both examples, the onset times are mapped into permeability estimates using a trajectory-based approach akin to seismic tomography.

58 GEOSCIENCES↗
NASA NTRS1999

The Use of Remote Sensing to Resolve the Aerosol Radiative Forcing

Satellites are used for remote sensing of aerosol optical thickness and optical properties in order to derive the aerosol direct and indirect radiative forcing of climate. Accuracy of the derived aerosol optical thickness is used as a measure of the accuracy in deriving the aerosol radiative forcing. Several questions can be asked to challenge this concept. Is the accuracy of the satellite-derived aerosol direct forcing limited to the accuracy of the measured optical thickness? What are the spectral bands needed to derive the total aerosol forcing? Does most of the direct or indirect aerosol forcing of climate originate from regions with aerosol concentrations that are high enough to be detected from space? What should be the synergism ground-based and space-borne remote sensing to solve the problem? We shall try to answer some of these questions, using AVIRIS airborne measurements and simulations.

Kaufman, Y. J.↗
NASA NTRS2007

Possible Evidence for Iron Sulfates, Iron Sulfides, and Elemental Sulfur at Gusev Crater, Mars, from Mer, Crism, and Analog Data

The Mossbauer (MB) spectrometers on the Mars Exploration Rovers (MER) Spirit (Gusev crater) and Opportunity (Meridiani Planum) have detected 14 Fe-bearing phases, and mineralogical assignments have been made for all except 3. Identified Fe2+-bearing phases are olivine, pyroxene, ilmenite, and troilite. Magnetite and chromite are present as mixed Fe(2+) and Fe(3+) phases. Identified Fe(3+) phase are jarosite, hematite, goethite, and nanophase ferric oxide (npOx). Fe(sup 0) (iron metal) is present as kamacite. Nanophase ferric oxide (npOx) is a generic name for octahedrally coordinated Fe(3+) alteration products that cannot be otherwise mineralogically assigned on the basis of MER data. On the Earth, npOx would include ferrihydrite, iddingsite, schwertmannite, akaganeite, and superparamagnetic hematite and goethite. The Mars Reconnaissance Orbiter CRISM instrument, a visible, near-IR hyperspectral imager (approximately 0.35 to 4 micron) enables mineralogical examination of Mars with a tool that is sensitive to H2O and to M-OH (M = Al, Si, Fe, Mg, etc.) at spatial resolution of about 20 m/pixel. We examined a CRISM image of the MER region of Gusev crater (Columbia Hills and plains to the west), looking for spectral evidence of the aqueous process apparent from the MER analyses. We also searched for spectral constraints for the mineralogical composition of our unidentified Fe-bearing phases and the forms of npOx present on Mars. We also consider evidence from analogue samples that the precursor for the goethite detected by MB in Clovis Class rocks is an iron sulfide. We suggest that there is some indirect evidence that elemental sulfur might be present to different extents in Clovis Class rocks, the Fe3Sulfate-rich soils, and perhaps even typical (Laguna Class) surface soils.

Morris, R. V.↗
DOE OSTI2022

Current and Future γ-Ray Searches for Dark Matter Annihilation Beyond the Unitarity Limit

For decades, searches for electroweak-scale dark matter (DM) have been performed without a definitive detection. This lack of success may hint that DM searches have focused on the wrong mass range. A proposed candidate beyond the canonical parameter space is ultraheavy DM (UHDM). In this work, we consider indirect UHDM annihilation searches for masses between 30 TeV and 30 PeV—extending well beyond the unitarity limit at ~100 TeV—and discuss the basic requirements for DM models in this regime. We explore the feasibility of detecting the annihilation signature, and the expected reach for UHDM with current and future very-high-energy (VHE; >100 GeV) γ-ray observatories. Specifically, we focus on three reference instruments: two Imaging Atmospheric Cherenkov Telescope arrays, modeled on VERITAS and CTA-North, and one extended air shower array, motivated by HAWC. With reasonable assumptions on the instrument response functions and background rate, we find a set of UHDM parameters (mass and cross section) for which a γ-ray signature can be detected by the aforementioned observatories. Here, we further compute the expected upper limits for each experiment. With realistic exposure times, the three instruments can probe DM across a wide mass range. At the lower end, it can still have a point-like cross section, while at higher masses the DM could have a geometric cross section, indicative of compositeness.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis

Objective: Electronic health record (EHR) systems contain a wealth of clinical data stored as both codified data and free-text narrative notes (NLP). The complexity of EHR presents challenges in feature representation, information extraction, and uncertainty quantification. Here, to address these challenges, we proposed an efficient Aggregated naRrative Codified Health (ARCH) records analysis to generate a large-scale knowledge graph (KG) for a comprehensive set of EHR codified and narrative features. Methods: Using data from 12.5 million Veterans Affairs patients, ARCH first derives embedding vectors and generates similarities along with associated p-values to measure the strength of relatedness between clinical features with statistical certainty quantification. Next, ARCH performs a sparse embedding regression to remove indirect linkage between features to build a sparse KG. Finally, ARCH was validated on various clinical tasks, including detecting known relationships between entity pairs, predicting drug side effects, disease phenotyping, as well as sub-typing Alzheimer’s disease patients. Results: ARCH produces high-quality clinical embeddings and KG for over 60,000 codified and narrative EHR concepts. The KG and embeddings are visualized in the R-shiny powered web-API.3 ARCH achieved high accuracy in detecting EHR concept relationships, with AUCs of 0.926 (codified) and 0.861 (NLP) for similar EHR concepts, and 0.810 (codified) and 0.843 (NLP) for related pairs. It detected drug side effects with a 0.723 AUC, which improved to 0.826 after fine-tuning. Using both codified and NLP features, the detection power increased significantly. Compared to other methods, ARCH has superior accuracy and enhances weakly supervised phenotyping algorithms’ performance. Notably, it successfully categorized Alzheimer’s patients into two subgroups with varying mortality rates. Conclusion: The proposed ARCH algorithm generates large-scale high-quality semantic representations and knowledge graph for both codified and NLP EHR features, useful for a wide range of predictive modeling tasks.

Electronic health records↗
NASA NTRS1993

An x ray scatter approach for non-destructive chemical analysis of low atomic numbered elements

A non-destructive x-ray scatter (XRS) approach has been developed, along with a rapid atomic scatter algorithm for the detection and analysis of low atomic-numbered elements in solids, powders, and liquids. The present method of energy dispersive x-ray fluorescence spectroscopy (EDXRF) makes the analysis of light elements (i.e., less than sodium; less than 11) extremely difficult. Detection and measurement become progressively worse as atomic numbers become smaller, due to a competing process called 'Auger Emission', which reduces fluorescent intensity, coupled with the high mass absorption coefficients exhibited by low energy x-rays, the detection and determination of low atomic-numbered elements by x-ray spectrometry is limited. However, an indirect approach based on the intensity ratio of Compton and Rayleigh scattered has been used to define light element components in alloys, plastics and other materials. This XRS technique provides qualitative and quantitative information about the overall constituents of a variety of samples.

Ross, H. Richard↗
DOE OSTI2022

The Low-redshift Lyman Continuum Survey. I. New, Diverse Local Lyman Continuum Emitters

The origins of Lyman continuum (LyC) photons responsible for the reionization of the universe are as of yet unknown and highly contested. Detecting LyC photons from the Epoch of Reionization is not possible due to absorption by the intergalactic medium, which has prompted the development of several indirect diagnostics to infer the rate at which galaxies contribute LyC photons to reionize the universe by studying lower-redshift analogs. We present the Low-redshift Lyman Continuum Survey (LzLCS) comprising measurements made with the Hubble Space Telescope Cosmic Origins Spectrograph for a z = 0.2–0.4 sample of 66 galaxies. After careful processing of the far-UV spectra, we obtain a total of 35 Lyman continuum emitters (LCEs) detected with 97.725% confidence, nearly tripling the number of known local LCEs. We estimate escape fractions from the detected LyC flux and upper limits on the undetected LyC flux, finding a range of LyC escape fractions up to 50%. Of the 35 LzLCS LCEs, 12 have LyC escape fractions greater than 5%, more than doubling the number of known local LCEs with cosmologically relevant LyC escape.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Environmental Persistence of Monkeypox Virus on Surfaces in Household of Person with Travel-Associated Infection, Dallas, Texas, USA, 2021

In July 2021, we conducted environmental sampling at the residence of a person in Dallas, Texas, USA, who had travel-associated human West African monkeypox virus (MPXV-WA). Targeted environmental swab sampling was conducted 15 days after the person who had monkeypox left the household. Results indicate extensive MPXV-WA DNA contamination, and viable virus from 7 samples was successfully isolated in cell culture. There was no statistical difference (p = 0.94) between MPXV-WA PCR positivity of porous (9/10, 90%) vs. nonporous (19/21, 90.5%) surfaces, but there was a significant difference (p<0.01) between viable virus detected in cultures of porous (6/10, 60%) vs. nonporous (1/21, 5%) surfaces. These findings indicate that porous surfaces (e.g., bedding, clothing) may pose more of a MPXV exposure risk than nonporous surfaces (e.g., metal, plastic). Viable MPXV was detected on household surfaces after at least 15 days. However, low titers (<102 PFU) indicate a limited potential for indirect transmission.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

4D imaging of lithium-batteries using correlative neutron and X-ray tomography with a virtual unrolling technique

The temporally and spatially resolved tracking of lithium intercalation and electrode degradation processes are crucial for detecting and understanding performance losses during the operation of lithium-batteries. Here, high-throughput X-ray computed tomography has enabled the identification of mechanical degradation processes in a commercial Li/MnO 2 primary battery and the indirect tracking of lithium diffusion; furthermore, complementary neutron computed tomography has identified the direct lithium diffusion process and the electrode wetting by the electrolyte. Virtual electrode unrolling techniques provide a deeper view inside the electrode layers and are used to detect minor fluctuations which are difficult to observe using conventional three dimensional rendering tools. Moreover, the 'unrolling' provides a platform for correlating multi-modal image data which is expected to find wider application in battery science and engineering to study diverse effects e.g. electrode degradation or lithium diffusion blocking during battery cycling.

25 ENERGY STORAGE↗