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DOE OSTI2023

A TOPAS model for lens-based proton radiography

Abstract Objective. Proton Radiography can be used in conjunction with proton therapy for patient positioning, real-time estimates of stopping power, and adaptive therapy in regions with motion. The modeling capability shown here can be used to evaluate lens-based radiography as an instantaneous proton-based radiographic technique. The utilization of user-friendly Monte Carlo program TOPAS enables collaborators and other users to easily conduct medical- and therapy- based simulations of the Los Alamos Neutron Science Center (LANSCE). The resulting transport model is an open-source Monte Carlo package for simulations of proton and heavy ion therapy treatments and concurrent particle imaging. Approach. The four-quadrupole, magnetic lens system of the 800-MeV proton beamline at LANSCE is modeled in TOPAS. Several imaging and contrast objects were modelled to assess transmission at energies from 230–930 MeV and different levels of particle collimation. At different proton energies, the strength of the magnetic field was scaled according to βγ, the inverse product of particle relativistic velocity and particle momentum. Main results. Materials with high atomic number, Z, (gold, gallium, bone-equivalent) generated more contrast than materials with low-Z (water, lung-equivalent, adipose-equivalent). A 5-mrad collimator was beneficial for tissue-to-contrast agent contrast, while a 10-mrad collimator was best to distinguish between different high-Z materials. Assessment with a step-wedge phantom showed water-equivalent path length did not scale directly according to predicted values but could be mapped more accurately with calibration. Poor image quality was observed at low energies (230 MeV), but improved as proton energy increased, with sub-mm resolution at 630 MeV. Significance. Proton radiography becomes viable for shallow bone structures at 330 MeV, and for deeper structures at 630 MeV. Visibility improves with use of high-Z contrast agents. This modality may be particularly viable at carbon therapy centers with accelerators capable of delivering high energy protons and could be performed with carbon therapy.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Galaxy deblending using residual dense neural networks

We present a new neural network approach for deblending galaxy images in astronomical data using Residual Dense Neural network (RDN) architecture. We train the network on synthetic galaxy images similar to the typical arrangements of field galaxies with a finite point spread function (PSF) and realistic noise levels. The main novelty of our approach is the usage of two distinct neural networks: i) a deblending network which isolates a single galaxy postage stamp from the composite and, ii) a classifier network which counts the remaining number of galaxies. The deblending proceeds by iteratively peeling one galaxy at a time from the composite until the image contains no further objects as determined by the classifier, or by other stopping criteria. By looking at the consistency in the outputs of the two networks, we can assess the quality of the deblending. Further, we characterize the flux and shape reconstructions in different quality bins and compare our deblender with the industry standard, SExtractor. We also discuss possible future extensions for the project with variable PSFs and noise levels.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS2017

The MERRA-2 Aerosol Reanalysis, 1980 Onward. Part II: Evaluation and Case Studies

The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2) is NASA’s latest reanalysis for the satellite era (1980-present) using the Goddard Earth Observing System version 5 (GEOS-5) Earth system model. MERRA-2 provides several improvements over its predecessor (MERRA), including the inclusion of interactive aerosols for the entire period. In addition to assimilating bias-corrected Aerosol Optical Depth (AOD) from the Moderate Resolution Imaging Spectroradiometer (MODIS) on the Terra and Aqua satellites, it also includes the assimilation of bias-corrected AOD from Advanced Very High Resolution Spectroradiometer (AVHRR) instruments, Multi-angle Imaging SpectroRadiometer (MISR) AOD over bright surfaces, and ground-based Aerosol Robotic Network (AERONET) AOD. This paper is the second of a pair that summarizes our efforts to assess the quality of the MERRA-2 aerosol assimilation. In this study, we first follow previous work performed with version 1 of the MERRA Aerosol Reanalysis (MERRAero) using independent observations. The evaluation of MERRA-2 Absorption Aerosol Optical Depth (AAOD) and ultra-violet Aerosol Index (UV-AI) against the Ozone Monitoring Instrument (OMI) observations show good agreement, particularly over dusty regions where our previous efforts improved model aerosol optical properties. Next, we find that aerosol assimilation system improves the aerosol vertical structure when compared to estimates from the same version of the model without AOD assimilation. A similar conclusion is found for MERRA-2 aerosol surface fine particulate matter (PM (sub 2.5)). However, deficiencies in the forward model such as missing emissions noted during the MERRAero study still explain the MERRA-2 PM(sub 2.5) bias relative to observations over the United States. Finally, to illustrate successes and weaknesses of the AOD assimilation, we focus on the performance of the MERRA-2 aerosol system during several major aerosol events: the Mount Pinatubo eruption in 1991, a Saharan dust event and transportation over the Atlantic Ocean during April 2010, the Rim Fire of summer 2013 in California, and an extreme pollution event over China in January 2013. We conclude with a summary that points to best practices for utilizing the MERRA-2 aerosol reanalysis in future studies.

V Buchard↗

NASA NTRS2006

Edge Response and NIIRS Estimates for Commercial Remote Sensing Satellites

Spatial resolution of panchromatic imagery from commercial remote sensing satellites was characterized based on edge response measurements using edge targets and the tilted-edge technique. Relative Edge Response (RER) was estimated as a geometric mean of normalized edge response differences measured in two directions of image pixels at points distanced from the edge by -0.5 and 0.5 of ground sample distance. RER is one of the engineering parameters used in the General Image Quality Equation to provide predictions of imaging system performance expressed in terms of the National Imagery Interpretability Rating Scale (NIIRS). By assuming a plausible range of signal-to-noise ratio and assessing the effects of Modulation Transfer Function compensation, the NIIRS estimates were made and then compared with vendor-provided values and evaluations conducted by the National Geospatial-Intelligence Agency.

Blonski, Slawomir↗

NASA NTRS2019

2018 NISAR Applications Workshop: Agriculture and Soil Moisture: Workshop Report

Monitoring and measurement from earth observing satellites have been a means for understanding the natural resources of our planet for over 40 years. However, in the last 10 years, with the development of innovative signal processing techniques, the ability to measure changes in moisture content and structure to the survey quality required by land managers opened a new frontier for the monitoring and assessment of agricultural lands from space. NASA’s upcoming NISAR mission will be unique in providing comprehensive and frequent imaging of nearly all lands globally twice every twelve days with open access to the data. This is potentially a game-changer for planning and management of agriculture globally, particularly in areas with dense cloud cover or at high latitudes. The NISAR Agriculture and Soil Moisture Applications Workshop was held on June 26-28, 2018 at the USDA National Agricultural Library in Beltsville, Maryland with representative members from the broader agricultural community including non-profits, private, and government agencies to determine how to best leverage the NISAR mission for monitoring agricultural lands globally.

Stavros, Natasha↗

DOE OSTI2023

Real-Time Diagnostics of 2D Crystal Transformations by Pulsed Laser Deposition: Controlled Synthesis of Janus WSSe Monolayers and Alloys

Energetic processing methods such as hyperthermal implantation hold special promise to achieve the precision synthesis of metastable two-dimensional (2D) materials such as Janus monolayers; however, they require precise control. Here, we report a feedback approach to reveal and control the transformation pathways in materials synthesis by pulsed laser deposition (PLD) and apply it to investigate the transformation kinetics of monolayer WS 2 crystals into Janus WSSe and WSe 2 by implantation of Se clusters with different maximum kinetic energies (<42 eV/Se-atom) generated by laser ablation of a Se target. Real-time Raman spectroscopy and photoluminescence are used to assess the structure, composition, and optoelectronic quality of the monolayer crystal as it is implanted with well-controlled fluxes of selenium for different kinetic energies that are regulated with in situ ICCD imaging, ion probe, and spectroscopy diagnostics. First-principles calculations, XPS, and atomic-resolution HAADF STEM imaging are used to understand the intermediate alloy compositions and their vibrational modes to identify transformation pathways. The real-time kinetics measurements reveal highly selective top-layer conversion as WS 2 transforms through WS 2(1–x) Se 2x alloys to WSe 2 and provide the means to adjust processing conditions to achieve fractional and complete Janus WSSe monolayers as metastable transition states. The general approach demonstrates a real-time feedback method to achieve Janus layers or other metastable alloys of the desired composition, and a general means to adjust the structure and quality of materials grown by PLD, addressing priority research directions for precision synthesis with real-time adaptive control.

2D materials↗

DOE OSTI2026

High-resolution bandpass x-ray imaging with crystal reflectors: Overcoming geometric aberrations

The imaging problem of a specular reflector is revisited. Retaining terms through the second order in the reflector surface expansion, we derive the form of the aberration-limiting aperture for arbitrary magnification, assuming no bandwidth limitations. A permissible relative aperture size of the reflector is limited by a set relative aberration tolerance and scales with the tangent of the central glancing angle of incidence. These limiting aberrations become practically insignificant near backscattering. The results extend to x-ray diffracting crystals in symmetric Bragg geometry shaped as an ellipsoid of revolution. This geometry permits polychromatic imaging for hard x-rays over a bandwidth defined by the accepted range of Bragg angles, thereby suppressing aberrations of higher orders. We assess ellipsoidal crystal imagers using ray tracing simulations for two high-magnification designs with Bragg angles far from and close to backscattering. Finally, in both cases, the ellipsoidal crystals produce images of higher quality compared to those formed by equivalent toroidal crystal imagers.

Bragg reflection↗

DOE OSTI2025

Illuminating the Night: A Survey of Super-Resolution Methods for Nighttime Light Images

Nighttime Light (NTL) images provide critical insights into urbanization, disaster response, and energy consumption. The VIIRS Day/Night Band (DNB) sensor offers high-quality NTL imagery with daily revisit rates, but the available spatial resolution hinders fine-grained accurate analysis. Super-resolution techniques aim to increase the resolution of NTL images, enabling more detailed assessments of infrastructure, light pollution, economic activity, and power outages. However, existing state-of-the-art super-resolution methods designed for natural images struggle with the unique characteristics of NTL data. This work provides a comprehensive review of super-resolution methods across multiple image modalities, evaluates their effectiveness on VI-IRS DNB data, and proposes a multi-modal super-resolution approach tailored to NTL imagery. The proposed approach integrates VIIRS DNB data with road networks and land use information to improve reconstruction accuracy and spatial detail. Code is available for this project athttps://code.ornl.gov/viirs-sr/sr-demos.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2025

Illuminating the Night: A Survey of Super-Resolution Methods for Nighttime Light Images

Nighttime Light (NTL) images provide critical insights into urbanization, disaster response, and energy consumption. The VIIRS Day/Night Band (DNB) sensor offers high-quality NTL imagery with daily revisit rates, but the available spatial resolution hinders fine-grained accurate analysis. Super-resolution techniques aim to increase the resolution of NTL images, enabling more detailed assessments of infrastructure, light pollution, economic activity, and power outages. However, existing state-of-the-art super-resolution methods designed for natural images struggle with the unique characteristics of NTL data. This work provides a comprehensive review of super-resolution methods across multiple image modalities, evaluates their effectiveness on VIIRS DNB data, and proposes a multi-modal super-resolution approach tailored to NTL imagery. The proposed approach integrates VIIRS DNB data with road networks and land use information to improve reconstruction accuracy and spatial detail. Code is available for this project at https://code.ornl.gov/viirs-sr/sr-demos.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

NASA NTRS1986

The nature and origin of mineral coatings on volcanic rocks of the Black Mountain, Stonewall Mountain and Kane Springs Wash volcanic centers in southern Nevada

Four LANDSAT thematic mapping scenes in southern Nevada were requested at two different acquisition times in order to assess the effect of vegetation on the signature of the volcanic units. The remote sensing data acquisition and analysis portion are nearly completed. The LANDSAT thematic mapping data is of good quality, and image analysis techniques are so far successful in delineating areas with distinct spectral characteristics. Spectrally distinct areas were correlated with variations in surface coating and lithologies of the volcanic rocks.

Taranik, J. V.↗

NASA NTRS2010

The Lunar Mapping and Modeling Project Update

The Lunar Mapping and Modeling Project (LMMP) is managing the development of a suite of lunar mapping and modeling tools and data products that support lunar exploration activities, including the planning, design, development, test, and operations associated with crewed and/or robotic operations on the lunar surface. In addition, LMMP should prove to be a convenient and useful tool for scientific analysis and for education and public outreach (E/PO) activities. LMMP will utilize data predominately from the Lunar Reconnaissance Orbiter, but also historical and international lunar mission data (e.g. Lunar Prospector, Clementine, Apollo, Lunar Orbiter, Kaguya, and Chandrayaan-1) as available and appropriate. LMMP will provide such products as image mosaics, DEMs, hazard assessment maps, temperature maps, lighting maps and models, gravity models, and resource maps. We are working closely with the LRO team to prevent duplication of efforts and ensure the highest quality data products. A beta version of the LMMP software was released for limited distribution in December 2009, with the public release of version 1 expected in the Fall of 2010.

Noble, S.↗

DOE OSTI2022

Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol

Chronic pain has become a global health problem contributing to years lived with disability and reduced quality of life. Advances in the clinical management of chronic pain have been limited due to incomplete understanding of the multiple risk factors and molecular mechanisms that contribute to the development of chronic pain. The Acute to Chronic Pain Signatures (A2CPS) Program aims to characterize the predictive nature of biomarkers (brain imaging, high-throughput molecular screening techniques, or “omics,” quantitative sensory testing, patient-reported outcome assessments and functional assessments) to identify individuals who will develop chronic pain following surgical intervention. The A2CPS is a multisite observational study investigating biomarkers and collective biosignatures (a combination of several individual biomarkers) that predict susceptibility or resilience to the development of chronic pain following knee arthroplasty and thoracic surgery. This manuscript provides an overview of data collection methods and procedures designed to standardize data collection across multiple clinical sites and institutions. Pain-related biomarkers are evaluated before surgery and up to 3 months after surgery for use as predictors of patient reported outcomes 6 months after surgery. The dataset from this prospective observational study will be available for researchers internal and external to the A2CPS Consortium to advance understanding of the transition from acute to chronic postsurgical pain.

60 APPLIED LIFE SCIENCES↗

NASA NTRS2011

Automated Verification of Spatial Resolution in Remotely Sensed Imagery

Image spatial resolution characteristics can vary widely among sources. In the case of aerial-based imaging systems, the image spatial resolution characteristics can even vary between acquisitions. In these systems, aircraft altitude, speed, and sensor look angle all affect image spatial resolution. Image spatial resolution needs to be verified with estimators that include the ground sample distance (GSD), the modulation transfer function (MTF), and the relative edge response (RER), all of which are key components of image quality, along with signal-to-noise ratio (SNR) and dynamic range. Knowledge of spatial resolution parameters is important to determine if features of interest are distinguishable in imagery or associated products, and to develop image restoration algorithms. An automated Spatial Resolution Verification Tool (SRVT) was developed to rapidly determine the spatial resolution characteristics of remotely sensed aerial and satellite imagery. Most current methods for assessing spatial resolution characteristics of imagery rely on pre-deployed engineered targets and are performed only at selected times within preselected scenes. The SRVT addresses these insufficiencies by finding uniform, high-contrast edges from urban scenes and then using these edges to determine standard estimators of spatial resolution, such as the MTF and the RER. The SRVT was developed using the MATLAB programming language and environment. This automated software algorithm assesses every image in an acquired data set, using edges found within each image, and in many cases eliminating the need for dedicated edge targets. The SRVT automatically identifies high-contrast, uniform edges and calculates the MTF and RER of each image, and when possible, within sections of an image, so that the variation of spatial resolution characteristics across the image can be analyzed. The automated algorithm is capable of quickly verifying the spatial resolution quality of all images within a data set, enabling the appropriate use of those images in a number of applications.

Davis, Bruce↗

NASA NTRS1975

A study of atmospheric effects on pattern recognition devices

The author has identified the following significant results. ERTS-1 imagery can be applied in the broadscale assessment of forest resources as a supplement to aerial photography and field survey. There was no application to inventory of crop and pasture diseases mainly because of poor quality and low resolution, and unreliability of image acquisition. Inventory of soil erosion was satisfactory in humid eastern New South Wales, but not in semi-arid areas. Patterns of snow cover, areas of water in natural and artificial water bodies, extent of bushfires, and location of coastal mobile sand bodies were readily apparent. ERTS-1 imagery was judged to be a valuable addition to conventional techniques of regional small scale geological mapping. ERTS data was successfully used to map flooding and flood progression. The imagery was found suitable for mapping at 1:1,000,000 scale both on the mainland and in Antarctica, but did not meet accuracy specifications for 1:250,000 mapping.

Thomson, F. J.↗

NASA NTRS2016

How Universal is the Relationship Between Remotely Sensed Vegetation Indices and Crop Leaf Area Index? A Global Assessment

Leaf Area Index (LAI) is a key variable that bridges remote sensing observations to the quantification of agroecosystem processes. In this study, we assessed the universality of the relationships between crop LAI and remotely sensed Vegetation Indices (VIs). We first compiled a global dataset of 1459 in situ quality-controlled crop LAI measurements and collected Landsat satellite images to derive five different VIs including Simple Ratio (SR), Normalized Difference Vegetation Index (NDVI), two versions of the Enhanced Vegetation Index (EVI and EVI2), and Green Chlorophyll Index (CI(sub Green)). Based on this dataset, we developed global LAI-VI relationships for each crop type and VI using symbolic regression and Theil-Sen (TS) robust estimator. Results suggest that the global LAI-VI relationships are statistically significant, crop-specific, and mostly non-linear. These relationships explain more than half of the total variance in ground LAI observations (R2 greater than 0.5), and provide LAI estimates with RMSE below 1.2 m2/m2. Among the five VIs, EVI/EVI2 are the most effective, and the crop-specific LAI-EVI and LAI-EVI2 relationships constructed by TS, are robust when tested by three independent validation datasets of varied spatial scales. While the heterogeneity of agricultural landscapes leads to a diverse set of local LAI-VI relationships, the relationships provided here represent global universality on an average basis, allowing the generation of large-scale spatial-explicit LAI maps. This study contributes to the operationalization of large-area crop modeling and, by extension, has relevance to both fundamental and applied agroecosystem research.

Vegetation Index↗

NASA NTRS2021

Jobos Bay Water Resources: Using Earth Observations to Analyze Shoreline Changes and Understand the Effects of Sea Level Rise in Southern Puerto Rico

Jobos Bay is located on the southern coast of Puerto Rico, which is known for intense hurricane seasons and increased seasonal storm surge. Scientists at Jobos Bay National Estuarine Research Reserve (JBNERR) are concerned that sea level rise will exacerbate coastal damage from these weather events. Using NASA Earth observations, our team analyzed coastal change, land use land cover change (LULC), mangrove forest extent, and water quality of Jobos Bay. Using Google Earth Engine, we evaluated coastal change and mangrove forest habitat within the study region by classifying NASA Earth observation imagery. We created historic LULC composite images to observe how land use changes over time and improve understanding of urbanization in the watershed. Leveraging previous water quality studies, our team compared water quality datasets generated by the Optical Reef and Coastal Area Assessment (ORCAA) tool to in situ sensors provided by JBNERR partners to understand the overall quality of water in the study area with respect to turbidity, chlorophyll-a, sea surface temperature, and colored dissolved organic matter (CDOM) concentrations. We discovered that 17% of the reserve has shifted from land to water since 1997 and lost 4.85 square kilometers of mangrove habitat over the past decade. Results from this study will inform the scientists of JBNERR and community members of the regional impacts of sea level rise. Being the first comprehensive study done in the estuary in nearly a decade, this serves as a baseline for future conservation efforts and research in the estuary.

Olivia Spencer↗

DOE OSTI2021

Primordial non-Gaussianity from the completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey – I: Catalogue preparation and systematic mitigation

ABSTRACT We investigate the large-scale clustering of the final spectroscopic sample of quasars from the recently completed extended Baryon Oscillation Spectroscopic Survey (eBOSS). The sample contains 343 708 objects in the redshift range 0.8 < z < 2.2 and 72 667 objects with redshifts 2.2 < z < 3.5, covering an effective area of $4699\, {\rm deg}^{2}$. We develop a neural network-based approach to mitigate spurious fluctuations in the density field caused by spatial variations in the quality of the imaging data used to select targets for follow-up spectroscopy. Simulations are used with the same angular and radial distributions as the real data to estimate covariance matrices, perform error analyses, and assess residual systematic uncertainties. We measure the mean density contrast and cross-correlations of the eBOSS quasars against maps of potential sources of imaging systematics to address algorithm effectiveness, finding that the neural network-based approach outperforms standard linear regression. Stellar density is one of the most important sources of spurious fluctuations, and a new template constructed using data from the Gaia spacecraft provides the best match to the observed quasar clustering. The end-product from this work is a new value-added quasar catalogue with the improved weights to correct for non-linear imaging systematic effects, which will be made public. Our quasar catalogue is used to measure the local-type primordial non-Gaussianity in a companion paper.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

In Search of Optimum Fresh-Cut Raw Material: Using Computer Vision Systems as a Sensory Screening Tool for Browning-Resistant Romaine Lettuce Accessions

The popularity of ready-to-eat (RTE) salads has prompted novel technology to prolong the shelf life of their ingredients. Fresh-cut romaine lettuce is widely used in RTE salads; however, its tendency to quickly discolor continues to be a challenge for the industry. Selecting the ideal lettuce accessions for use in RTE salads is essential to ensure maximum shelf life, and it is critical to have a practical way to assess and compare the quality of multiple lettuce accessions that are being considered for use in fresh-cut applications. Thus, in this work we aimed to determine whether a computer vision system (CVS) composed of image acquisition, processing, and analysis could be effective to detect visual quality differences among 16 accessions of fresh-cut romaine lettuce during postharvest storage. The CVS involved a post-capturing color correction, effective image segmentation, and calculation of a browning index, which was tested as a predictor of quality and shelf life of fresh-cut romaine lettuce. The results demonstrated that machine vision software can be implemented to replace or supplement the scoring of a trained panel and instrumental quality measurements. Overall visual quality, a key sensory parameter that determines food preferences and consumer behavior, was highly correlated with the browning index, with a Pearson correlation coefficient of −0.85. Other important sensory decision parameters were also strongly or moderately correlated with the browning index, with Pearson correlation coefficients of −0.84 for freshness, 0.79 for off odor, and 0.57 for browning. The ranking of the accessions according to quality acceptability from the sensory evaluation produced a similar pattern to those obtained with the CVS. This study revealed that multiple lettuce accessions can be effectively benchmarked for their performance as fresh-cut sources via a CVS-based method. Future opportunities and challenges in using machine vision image processing to predict consumer preferences for RTE salad greens is also discussed.

Agriculture↗