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At least 199 records · Page 11

The Average Shape of Sea Ice Ridge Keels

Through analysis of over 64,000 ridge profiles identified from moored upward-looking sonars, we identify a well-defined average shape of pressure ridge keels that is concave or cusped, not triangular as widely assumed in other literature. On the basis of this average shape, we put forward a new, dimensional-definition, of a pressure ridge cross-section that follows a negative exponential form and allows an average pressure ridge cross section to be constructed with knowledge or choice of a single parameter. The horizonal asymptote of the profile represents the draft of the “background” ice in which the ridge is embedded. The draft of this background ice scales with keel depth and is typically greater than can be accounted through thermodynamic growth, indicating that ridges tend to be embedded in fields of mechanically thickened rubble. Using a variational ridge model we simulated keel shapes for a range of ridge building conditions. Here, the model results agree well with the observations and indicate the cusped shape of an average ridge profile arises from the varying angle of horizontal shear in the ice cover when ridges form. The modeling results also explain the elongated tail of the area draft distribution of the pack.

54 ENVIRONMENTAL SCIENCES↗

Future of plasma etching for microelectronics: Challenges and opportunities

Plasma etching is an essential semiconductor manufacturing technology required to enable the current microelectronics industry. Along with lithographic patterning, thin-film formation methods, and others, plasma etching has dynamically evolved to meet the exponentially growing demands of the microelectronics industry that enables modern society. At this time, plasma etching faces a period of unprecedented changes owing to numerous factors, including aggressive transition to three-dimensional (3D) device architectures, process precision approaching atomic-scale critical dimensions, introduction of new materials, fundamental silicon device limits, and parallel evolution of post-CMOS approaches. The vast growth of the microelectronics industry has emphasized its role in addressing major societal challenges, including questions on the sustainability of the associated energy use, semiconductor manufacturing related emissions of greenhouse gases, and others. The goal of this article is to help both define the challenges for plasma etching and point out effective plasma etching technology options that may play essential roles in defining microelectronics manufacturing in the future. The challenges are accompanied by significant new opportunities, including integrating experiments with various computational approaches such as machine learning/artificial intelligence and progress in computational approaches, including the realization of digital twins of physical etch chambers through hybrid/coupled models. These prospects can enable innovative solutions to problems that were not available during the past 50 years of plasma etch development in the microelectronics industry. To elaborate on these perspectives, the present article brings together the views of various experts on the different topics that will shape plasma etching for microelectronics manufacturing of the future.

Engineering↗

Integrating high resolution drone imagery and forest inventory to distinguish canopy and understory trees and quantify their contributions to forest structure and dynamics

Tree growth and survival differ strongly between canopy trees (those directly exposed to overhead light), and understory trees. However, the structural complexity of many tropical forests makes it difficult to determine canopy positions. The integration of remote sensing and ground-based data enables this determination and measurements of how canopy and understory trees differ in structure and dynamics. Here we analyzed 2 cm resolution RGB imagery collected by a Remotely Piloted Aircraft System (RPAS), also known as drone, together with two decades of bi-annual tree censuses for 2 ha of old growth forest in the Central Amazon. We delineated all crowns visible in the imagery and linked each crown to a tagged stem through field work. Canopy trees constituted 40% of the 1244 inventoried trees with diameter at breast height (DBH) > 10 cm, and accounted for ~70% of aboveground carbon stocks and wood productivity. The probability of being in the canopy increased logistically with tree diameter, passing through 50% at 23.5 cm DBH. Diameter growth was on average twice as large in canopy trees as in understory trees. Growth rates were unrelated to diameter in canopy trees and positively related to diameter in understory trees, consistent with the idea that light availability increases with diameter in the understory but not the canopy. The whole stand size distribution was best fit by a Weibull distribution, whereas the separate size distributions of understory trees or canopy trees > 25 cm DBH were equally well fit by exponential and Weibull distributions, consistent with mechanistic forest models. The identification and field mapping of crowns seen in a high resolution orthomosaic revealed new patterns in the structure and dynamics of trees of canopy vs. understory at this site, demonstrating the value of traditional tree censuses with drone remote sensing.

59 BASIC BIOLOGICAL SCIENCES↗

Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale

Abstract High titer, rate, yield (TRY), and scalability are challenging metrics to achieve due to trade-offs between carbon use for growth and production. To achieve these metrics, we take the minimal cut set (MCS) approach that predicts metabolic reactions for elimination to couple metabolite production strongly with growth. We compute MCS solution-sets for a non-native product indigoidine, a sustainable pigment, in Pseudomonas putida KT2440, an emerging industrial microbe. From the 63 solution-sets, our omics guided process identifies one experimentally feasible solution requiring 14 simultaneous reaction interventions. We implement a total of 14 genes knockdowns using multiplex-CRISPRi. MCS-based solution shifts production from stationary to exponential phase. We achieve 25.6 g/L, 0.22 g/l/h, and ~50% maximum theoretical yield (0.33 g indigoidine/g glucose). These phenotypes are maintained from batch to fed-batch mode, and across scales (100-ml shake flasks, 250-ml ambr®, and 2-L bioreactors).

59 BASIC BIOLOGICAL SCIENCES↗

Quantum-inspired method for solving the Vlasov-Poisson equations

Kinetic simulations of collisionless (or weakly collisional) plasmas using the Vlasov equation are often infeasible due to high-resolution requirements and the exponential scaling of computational cost with respect to dimension. Recently, it has been proposed that matrix product state (MPS) methods, a quantum-inspired but classical algorithm, can be used to solve partial differential equations with exponential speed-up, provided that the solution can be compressed and efficiently represented as a MPS within some tolerable error threshold. Here, in this work, we explore the practicality of MPS methods for solving the Vlasov-Poisson equations for systems with one coordinate in space and one coordinate in velocity, and find that important features of linear and nonlinear dynamics, such as damping or growth rates and saturation amplitudes, can be captured while compressing the solution significantly. Furthermore, by comparing the performance of different mappings of the distribution functions onto the MPS, we develop an intuition of the MPS representation and its behavior in the context of solving the Vlasov-Poisson equations, which will be useful for extending these methods to higher-dimensional problems.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Manipulating Growth and Propagation of Correlations in Dipolar Multilayers: From Pair Production to Bosonic Kitaev Models

Here, we study the nonequilibrium dynamics of dipoles confined in multiple stacked two-dimensional layers realizing a long-range interacting quantum spin 1/2 XXX model. We demonstrate that strong in-plane interactions can protect a manifold of collective layer dynamics. This then allows us to map the many-body spin dynamics to bosonic models. In a bilayer configuration we show how to engineer the paradigmatic two-mode squeezing Hamiltonian known from quantum optics, resulting in exponential production of entangled pairs and generation of metrologically useful entanglement from initially prepared product states. In multilayer configurations we engineer a bosonic variant of the Kitaev model displaying chiral propagation along the layer direction. Our study illustrates how the control over interactions, lattice geometry, and state preparation in interacting dipolar systems uniquely afforded by AMO platforms such as Rydberg and magnetic atoms, polar molecules, or trapped ions allows for the control over the temporal and spatial propagation of correlations for applications in quantum sensing and quantum simulation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Tunable momentum pair creation of spin excitations in dipolar bilayers

Here we study the temporal growth and spatial propagation of quantum correlations in a two-dimensional bilayer realizing a spin-1/2 quantum XXZ model with couplings mediated by long-range and anisotropic dipolar interactions. Starting with an initial state consisting of spins with opposite magnetization in each of the layers, we predict a dynamic instability that results, at short times, in the creation of correlated pairs of excitations at specific momenta at exponentially fast rates and entanglement between spatially separated modes. The momentum structure of the created pairs can be controlled via the dipolar orientation, the layer separation, or the dipolar couplings. The predicted behavior remains observable at very low filling fractions, making it accessible in state-of-the-art experiments with Rydberg atoms, magnetic atoms, and polar molecule arrays.

74 ATOMIC AND MOLECULAR PHYSICS↗

A One‐Dimensional Model for Turbulent Mixing in the Benthic Biolayer of Stream and Coastal Sediments

Abstract In this paper, we develop and validate a rigorous modeling framework, based on Duhamel's Theorem, for the unsteady one‐dimensional vertical transport of a solute across a flat sediment‐water interface (SWI) and through the benthic biolayer of a turbulent stream. The modeling framework is novel in capturing the two‐way coupling between evolving solute concentrations above and below the SWI and in allowing for a depth‐varying diffusivity. Three diffusivity profiles within the sediment (constant, exponentially decaying, and a hybrid model) are evaluated against an extensive set of previously published laboratory measurements of turbulent mass transfer across the SWI. The exponential diffusivity profile best represents experimental observations and its reference diffusivity scales with the permeability Reynolds number, a dimensionless measure of turbulence at the SWI. The depth over which turbulence‐enhanced diffusivity decays is of the order of centimeters and comparable to the thickness of the benthic biolayer. Thus, turbulent mixing across the SWI may serve as a universal transport mechanism, supplying the nutrient and energy fluxes needed to sustain microbial growth, and nutrient processing, in the benthic biolayer of stream and coastal sediments.

Grant, Stanley B.↗

The Anatomy of an Unusual Edge-on Protoplanetary Disk. I. Dust Settling in a Cold Disk

As the earliest stage of planet formation, massive, optically thick, and gas-rich protoplanetary disks provide key insights into the physics of star and planet formation. When viewed edge-on, high-resolution images offer a unique opportunity to study both the radial and vertical structures of these disks and relate this to vertical settling, radial drift, grain growth, and changes in the midplane temperatures. In this work, we present multi-epoch Hubble Space Telescope and Keck scattered light images, and an Atacama Large Millimeter/submillimeter Array 1.3 mm continuum map for the remarkably flat edge-on protoplanetary disk SSTC2DJ163131.2–242627, a young solar-type star in ρ Ophiuchus. We model the 0.8 μm and 1.3 mm images in separate Markov Chain Monte Carlo (MCMC) runs to investigate the geometry and dust properties of the disk using the MCFOST radiative transfer code. In scattered light, we are sensitive to the smaller dust grains in the surface layers of the disk, while the submillimeter dust continuum observations probe larger grains closer to the disk midplane. An MCMC run combining both data sets using a covariance-based log-likelihood estimation was marginally successful, implying insufficient complexity in our disk model. The disk is well characterized by a flared disk model with an exponentially tapered outer edge viewed nearly edge-on, though some degree of dust settling is required to reproduce the vertically thin profile and lack of apparent flaring. A colder than expected disk midplane, evidence for dust settling, and residual radial substructures all point to a more complex radial density profile to be probed with future, higher-resolution observations.

47 OTHER INSTRUMENTATION↗

Growth, optical, and luminescence characterization of LiCsMoO{sub 4} crystal.

A crack-free LiCsMoO4 crystal was grown with the conventional Czochralski technique. The optical properties of the crystal show it transparent well in the visible region. The luminescence properties of the crystal were studied from 300 to 14 K under the excitation with a 280 nm light-emitting diode (LED). At room temperature, the luminescence light yield is low; however, it increases significantly at low temperatures. The decay time of the crystal is measured under the excitation of the crystal with the 280 nm LED source. The decay times at all the temperatures are fitted with three exponential functions. The average decay time from 300 to 14 K varies from 6.7 to 8.6 mu s. A thermoluminescence (TL) study of the crystal was carried out from 9 to 300 K. Three TL peaks are found between 165 and 250 K. This study shows that the developed crystal has a potential application in search of neutrinoless double-beta decay of Mo-100 at cryogenic temperatures.

Conventional Czochralski technique↗

Knowledge Oriented Graph Unified Transformer (KOGUT) v0.1

KOGUT — Knowledge Oriented Graph Unified Transformer KOGUT implements the Relational Graph Transformer (RelGT) architecture for knowledge graph link prediction in biological domains, with a primary focus on microbial growth media prediction. While the original RelGT (arXiv:2505.10960) targets relational tables, time series, and multi-table databases, KOGUT adapts this architecture for heterogeneous biological knowledge graphs, providing first-in-class AI predictive models for microbial cultivation. Key Adaptations Beyond Original RelGT: - Knowledge Graph Focus: Applied to biological KGs with semantic node types (taxa, chemicals, media, phenotypes, environments) versus generic relational database tables, trained on the KG-Microbe knowledge graph (1.3M entities, 2.9M edges, 24 relation types). - Multimodal Node Encoding: Integrates node labels, categories, descriptions, and synonyms from KG metadata through learned embedding layers—adapting relational column features to graph node attributes with textual semantics. - Extended K-Hop Subgraph Strategy: Optimized neighborhood sampling (3-hop default, configurable up to 200 nodes) tuned for sparse biological networks, building on the original local-global attention framework with biological relation preservation. - Biolink Predicate Preservation: Type-specific transformations for 24 biological edge semantics (occurs_in, consumes, produces, has_phenotype, subclass_of) beyond standard relational foreign keys, enabling multi-relation link prediction. - Inductive Learning Support: Enables zero-shot predictions for novel taxa through feature-based embeddings (temperature, oxygen requirements, gram stain, cell shape), extending the original transductive relational benchmark scope to uncultured microorganisms. CheapSOTA Performance Optimizations (This Distribution): - VQ-EMA Centroid Attention: Vector quantization with exponential moving average for improved global context modeling (+5-10% MRR improvement). - HDF5 Precomputed Data Loading: One-time preprocessing of k-hop subgraphs to eliminate redundant graph traversals (2-5× training speedup). - Distributed Data Parallel Training: Multi-GPU support for scaling to larger knowledge graphs (tested on 4× NVIDIA A100 GPUs at NERSC Perlmutter). - Mixed Precision Training: Automatic mixed precision (AMP) for memory efficiency and faster training. Advantages Over Standard Knowledge Graph Embedding Models: Combines RelGT's proven multi-element tokenization (features, type, hop, structure) with graph-native biological representations, enabling interpretable link prediction across heterogeneous entities that standard embedding models (TransE, RotatE, ComplEx) and table-based transformers cannot directly model. Achieves near-perfect performance on microbial growth media prediction (MRR: 0.9966, Precision@1: 0.9932, Hit@10: 1.0000) while maintaining explainability through attention-based reasoning over biological pathways. Training Data: - KG-Microbe merged knowledge graph: 1,379,337 nodes, 2,960,472 edges - 24 biological relation types including taxonomic hierarchies, metabolic interactions, phenotype associations, and environmental relationships - Primary prediction task: Growth media suitability for microbial taxa (biolink:occurs_in, 50K edges) - Multi-relation capability: Predicts links for any of the 24 relation types, including chemical consumption/production, phenotype associations, and taxonomic classification Citation: Original RelGT Architecture: Dwivedi et al., "Relational Graph Transformer", arXiv:2505.10960, 2025 KOGUT Implementation: Knowledge Oriented Graph Unified Transformer for Microbial Growth Media Prediction Developed at Lawrence Berkeley National Laboratory (LBNL) Trained on NERSC Perlmutter supercomputer

Joachimiak, Marcin [Lawrence Berkeley National Lab↗

Overvoltage Prevention and Curtailment Reduction Using Adaptive Droop-Based Supplementary Control in Smart Inverters

Recent developments in the renewable energy sector have seen an unprecedented growth in residential photovoltaic (PV) installations. However, high PV penetration levels often lead to overvoltage problems in low-voltage (LV) distribution feeders. Smart inverter control such as active power curtailment (APC)-based overvoltage control can be implemented to overcome these challenges. The APC technique utilizes a constant droop-based approach which curtails power rigidly, which can lead to significant energy curtailment in the LV distribution feeders. In this paper, different variations of the APC technique with linear, quadratic, and exponential droops have been analyzed from the point-of-view of energy curtailment for a LV distribution network in North America. Further, a combinatorial approach using various droop-based APC methods in conjunction with adaptive dynamic programming (ADP) as a supplementary control scheme has also been proposed. The proposed approach minimizes energy curtailment in the LV distribution network by adjusting the droop gains. Simulation results depict that ADP in conjunction with exponential droop reduces the energy curtailment to approximately 50% compared to using the standard linear droop.

42 ENGINEERING↗

Anatomy of information scrambling and decoherence in the integrable Sachdev-Ye-Kitaev model

The growth of information scrambling, captured by out-of-time-order correlation functions (OTOCs), is a central indicator of the nature of many-body quantum dynamics. Here, we compute analytically the complete time dependence of the OTOC for an integrable Sachdev-Ye-Kitaev (SYK) model, 𝑁 Majoranas with random two-body interactions of infinite range, coupled to a Markovian bath at finite temperature. In the limit of no coupling to the bath, the time evolution of scrambling experiences different stages. For 𝑡≲√𝑁, after an initial polynomial growth, the OTOC approaches saturation in a power-law fashion with oscillations superimposed. At 𝑡∼√𝑁, the OTOC reverses trend and starts to decrease linearly in time. The reason for this linear decrease is that, despite being a subleading 1/𝑁 effect, the OTOC in this region is governed by the spectral form factor of the antisymmetric couplings of the SYK model. The linear decrease stops at 𝑡∼2⁢𝑁, the Heisenberg time, where saturation occurs. The effect of the environment is an overall exponential decay of the OTOC for times longer than the inverse of the coupling strength to the bath. Here, the oscillations at 𝑡≲√𝑁 indicate lack of thermalization—a desired feature for better performance of quantum information devices.

Open quantum systems & decoherence↗

Fracture length data for geothermal applications

Fracture lengths govern permeability and are unknowns in geothermal assessment. Along their lengths, fracture widths vary due to growth by linkage. Under the influence of diagenesis, narrow widths seal, breaking porosity continuity and reducing open length. The largest range of widths and thus susceptibility to fill occurs where fractures are linked by narrow segments. Outcrops of a geothermal target, Cambrian Potsdam quartz arenite, contain opening-mode fractures having lengths spanning five orders of magnitude from 0.082 mm to 17.9 m. Combined lengths measured at a range of scales can be described by power laws, but at a given image resolution, lengths are best fit by exponential functions. Owing to preferential sealing of small fractures, open fractures follow exponential functions, but values depend on rules for designating fractures as continuous. En échelon segments, offset 10 mm, are connected by narrow fractures or microfractures (hard linked) not evident on outcrop 1 m-elevation LiDAR or 30 m-height drone images. A rule that identifies where narrow and likely connected segments are located can yield lengths meaningful for flow simulation. Depending on diagenesis, continuity rules can halve or double average and maximum length values. Length values from outcrop for geothermal applications should be adjusted based on wellsite-specific diagenesis information.

15 GEOTHERMAL ENERGY↗

Provably accurate simulation of gauge theories and bosonic systems

Quantum many-body systems involving bosonic modes or gauge fields have infinite-dimensional local Hilbert spaces which must be truncated to perform simulations of real-time dynamics on classical or quantum computers. To analyze the truncation error, we develop methods for bounding the rate of growth of local quantum numbers such as the occupation number of a mode at a lattice site, or the electric field at a lattice link. Our approach applies to various models of bosons interacting with spins or fermions, and also to both abelian and non-abelian gauge theories. We show that if states in these models are truncated by imposing an upper limit Λ on each local quantum number, and if the initial state has low local quantum numbers, then an error at most ϵ can be achieved by choosing Λ to scale polylogarithmically with ϵ − 1 , an exponential improvement over previous bounds based on energy conservation. For the Hubbard-Holstein model, we numerically compute a bound on Λ that achieves accuracy ϵ , obtaining significantly improved estimates in various parameter regimes. We also establish a criterion for truncating the Hamiltonian with a provable guarantee on the accuracy of time evolution. Building on that result, we formulate quantum algorithms for dynamical simulation of lattice gauge theories and of models with bosonic modes; the gate complexity depends almost linearly on spacetime volume in the former case, and almost quadratically on time in the latter case. We establish a lower bound showing that there are systems involving bosons for which this quadratic scaling with time cannot be improved. By applying our result on the truncation error in time evolution, we also prove that spectrally isolated energy eigenstates can be approximated with accuracy ϵ by truncating local quantum numbers at Λ = polylog ( ϵ − 1 ) .

Tong, Yu↗

Dissipation in the magnetic turbulence of reversed field pinch plasmas

Reversed field pinch plasmas are subject to tearing instability that creates a broad spectrum of magnetic fluctuations. The dominant fluctuations have poloidal and toroidal mode numbers (m,n) = (1,6 - 10) and can grow to 2 - 3% of the mean magnetic field. Through non-linear coupling this growth culminates in a strong reconnection event and broadening of the magnetic spectrum extending to the ion gyroradius scale. Multiple developments occur during the reconnection stage: ions and electrons are energized, magnetic fluctuation amplitudes increase, plasma flow is halted, and the toroidal magnetic flux increases in a sawtooth-like fashion as the RFP dynamo becomes stronger. Magnetic fluctuations are measured in the plasma edge at multiple radial locations from r/a = 0.75 to 0.96 to assess and characterize the magnetic turbulence. The measured spectrum perpendicular to the mean field, S(k ⊥ ), can be fit to a model spectrum consisting of power law and exponential component with one free parameter that characterizes dissipation. The measured dissipation is much larger than estimated from classical viscous or resistive dissipation, but it is consistent with a flow damping measurement of anomalous viscosity. The measurements show an evolution of the spectrum during which fluctuation power builds up in the smallest wavenumbers and cascades to the larger wavenumber due to the non-linear coupling between the linear (m,n) = (1, > 6) and the non-linear (m,n) = (0, 1) tearing mo

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The molecular mechanism of load adaptation by branched actin networks

Branched actin networks are self-assembling molecular motors that move biological membranes and drive many important cellular processes, including phagocytosis, endocytosis, and pseudopod protrusion. When confronted with opposing forces, the growth rate of these networks slows and their density increases, but the stoichiometry of key components does not change. The molecular mechanisms governing this force response are not well understood, so we used single-molecule imaging and AFM cantilever deflection to measure how applied forces affect each step in branched actin network assembly. Although load forces are observed to increase the density of growing filaments, we find that they actually decrease the rate of filament nucleation due to inhibitory interactions between actin filament ends and nucleation promoting factors. The force-induced increase in network density turns out to result from an exponential drop in the rate constant that governs filament capping. The force dependence of filament capping matches that of filament elongation and can be explained by expanding Brownian Ratchet theory to cover both processes. We tested a key prediction of this expanded theory by measuring the force-dependent activity of engineered capping protein variants and found that increasing the size of the capping protein increases its sensitivity to applied forces. In summary, we find that Brownian Ratchets underlie not only the ability of growing actin filaments to generate force but also the ability of branched actin networks to adapt their architecture to changing loads.

59 BASIC BIOLOGICAL SCIENCES↗

Surface SiO 2 Thickness Controls Uniform-to-Localized Transition in Lithiation of Silicon Anodes for Lithium-Ion Batteries

Silicon is a promising anode material for lithium-ion batteries because of its high capacity, but its widespread adoption has been hampered by a low cycle life arising from mechanical failure and the absence of a stable solid–electrolyte interphase (SEI). Understanding SEI formation and its impact on cycle life is made more complex by the oxidation of silicon materials in air or during synthesis, which leads to SiO x coatings of varying thicknesses that form the true surface of the electrode. Here, the lithiation of SiO 2 -coated Si is studied in a controlled manner using SiO 2 coatings of different thicknesses grown on Si wafers via thermal oxidation. SiO 2 thickness has a profound effect on lithiation: below 2 nm, SEI formation followed by uniform lithiation occurs at positive voltages versus Li/Li + . Si lithiation is reversible, and SiO 2 lithiation is largely irreversible. Above 2 nm SiO 2 , voltammetric currents decrease exponentially with SiO 2 thickness. For 2–3 nm SiO 2 , SEI formation above 0.1 V is suppressed, but a hold at low or negative voltages can initiate charge transfer whereupon SEI formation and uniform lithiation occur. Cycling of Si anodes with an SiO 2 coating thinner than 3 nm occurs at high Coulombic efficiency (CE). If an SiO 2 coating is thicker than 3–4 nm, the behavior is totally different: lithiation at positive voltages is strongly inhibited, and lithiation occurs at poor CE and is highly localized at pinholes which grow over time. As they grow, lithiation becomes more facile and the CE increases. Pinhole growth is proposed to occur via rapid transport of Li along the SiO 2 /Si interface radially outward from an existing pinhole, followed by the lithiation of SiO 2 from the interface outward.

25 ENERGY STORAGE↗