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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

DOE JGI Metagenome Workflow

The DOE Joint Genome Institute (JGI) Metagenome Workflow performs metagenome data processing, including assembly; structural, functional, and taxonomic annotation; and binning of metagenomic data sets that are subsequently included into the Integrated Microbial Genomes and Microbiomes (IMG/M) (I.-M. A. Chen, K. Chu, K. Palaniappan, A. Ratner, et al., Nucleic Acids Res, 49:D751–D763, 2021, https://doi.org/10.1093/nar/gkaa939) comparative analysis system and provided for download via the JGI data portal (https://genome.jgi.doe.gov/portal/). This workflow scales to run on thousands of metagenome samples per year, which can vary by the complexity of microbial communities and sequencing depth. Here, we describe the different tools, databases, and parameters used at different steps of the workflow to help with the interpretation of metagenome data available in IMG and to enable researchers to apply this workflow to their own data. We use 20 publicly available sediment metagenomes to illustrate the computing requirements for the different steps and highlight the typical results of data processing. The workflow modules for read filtering and metagenome assembly are available as a workflow description language (WDL) file (https://code.jgi.doe.gov/BFoster/jgi_meta_wdl). The workflow modules for annotation and binning are provided as a service to the user community at https://img.jgi.doe.gov/submit and require filling out the project and associated metadata descriptions in the Genomes OnLine Database (GOLD) (S. Mukherjee, D. Stamatis, J. Bertsch, G. Ovchinnikova, et al., Nucleic Acids Res, 49:D723–D733, 2021, https://doi.org/10.1093/nar/gkaa983).

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1991

Sea ice - atmosphere interaction: Application of multispectral satellite data in polar surface energy flux estimates

In the past six months, work has continued on energy flux sensitivity studies, ice surface temperature retrievals, corrections to Advanced Very High Resolution Radiometer (AVHRR) thermal infrared data, modelling of cloud fraction retrievals, and radiation climatologies. We tentatively conclude that the SSM/I may not provide accurate enough estimates of ice concentration and type to improve our shorter term energy flux estimates. SSM/I derived parameters may still be applicable in longer term climatological flux characterizations. We hold promise for a system coupling observation to a ice deformation model. Such a model may provide information on ice distribution which can be used in energy flux calculations. Considerable variation was found in modelled energy flux estimates when bulk transfer coefficients are modulated by lead fetch. It is still unclear what the optimum formulation is and this will be the subject of further work. Data sets for ice surface temperature retrievals were assembled and preliminary data analysis was started. Finally, construction of a conceptual framework for further modelling of the Arctic radiation flux climatology was started.

Steffen, Konrad↗
NASA NTRS1990

Vehicle processing operations database

The Vehicle Processing Operations Data base (VPOD) has been designed and constructed to enable the collection and preliminary analysis of data relative to the processing of planetary exploration vehicles in low Earth orbit. VPOD has the capability to hierarchically store the events, assemblies, and equipment data needed for performing vehicle processing analysis, to whatever level of detail available. This permits some analysis to be performed even during the very early phases of vehicle and mission design. As more data about the events, assemblies, or equipment become available, the analysis can then be refined using the increased level of detail. VPOD output is based on a mission defined by selecting from the VPOD Events data base the events that are required to perform the desired tasks. The outputs available include total crew time, crew skill requirements, equipment needed, assemblies worked per event, to any available level of detail. The VPOD design is structured to interface with an operations simulation capability which is currently in the requirements definition phase. The simulator will use information from the VPOD to perform operations analysis for missions being conducted in low Earth orbit. VPOD information, along with information from the science missions operations data base and a Space Station configuration data base, will be used by the simulator to provide a capability to study total system operations and resources requirements.

Ganoe, George G.↗
DOE OSTI2020

SAMPA Based Streaming Readout Data Acquisition Prototype

We have assembled a small-scale streaming data acquisition system based on the SAMPA front-end ASIC. The 32-channel SAMPA chip was designed for the high-luminosity upgrade of the ALICE Time Projection Chamber (TPC) detector at the CERN Large Hadron Collider. The goals of the prototype system are to determine if the SAMPA chip is appropriate for use in detector systems at Jefferson Lab, and to gain experience with the hardware and software required to deploy streaming data acquisition systems in nuclear physics experiments. The 800 channel system is composed of components used in the ALICE TPC data acquisition upgrade. Five front-end cards (FEC) support five SAMPA chips each. SAMPA data streams on an FEC are concentrated into two high-speed (4.48 Gb/s) serial data streams by a pair Gigabit Transceiver ASICs (GBTx). These ten streams (44.8 Gb/s) are transmitted from the FECs over fibers to a PCIe based readout unit. The FPGA engine on the readout unit compresses data for transmission to a server via 100 Gb ethernet. Components on the FECs are radiation tolerant. High data rates can be handled. The system is by design scalable and thus provides a functional prototype for high-rate streaming readout at Jefferson Lab and the future Electron Ion Collider. We have made fundamental measurements (noise, linearity, time resolution) on the SAMPA ASIC. We have also coupled the readout system to a small Gas Electron Multiplier (GEM) detector and have studied its response to cosmic rays. A beam test of the system is planned.

ABBOTT, David↗
NASA NTRS1956

Preliminary Internal Performance Data for a Variable-Ejector Assembly on the XJ79-GE-1 Turbojet Engine: Nonafterburning Configurations - 1

Internal performance of an XJ79-GE-1 variable ejector was experimentally determined with the primary nozzle in a representative nonafterburning position. Jet-thrust and air-handling data were obtained in quiescent air for 11 selected ejector configurations over a wide range of operation. Additional data, at specific operating conditions, were obtained which indicate the ejector diameter ratio for peak jet-thrust performance. The experimental ejector data are presented in both graphical and tabulated form.

Greathouse, William K.↗
NASA NTRS1990

Control/structure interaction conceptual design tool

The JPL Control/Structure Interaction Program is developing new analytical methods for designing micro-precision spacecraft with controlled structures. One of these, the Conceptual Design Tool, will illustrate innovative new approaches to the integration of multi-disciplinary analysis and design methods. The tool will be used to demonstrate homogeneity of presentation, uniform data representation across analytical methods, and integrated systems modeling. The tool differs from current 'integrated systems' that support design teams most notably in its support for the new CSI multi-disciplinary engineer. The design tool will utilize a three dimensional solid model of the spacecraft under design as the central data organization metaphor. Various analytical methods, such as finite element structural analysis, control system analysis, and mechanical configuration layout, will store and retrieve data from a hierarchical, object oriented data structure that supports assemblies of components with associated data and algorithms. In addition to managing numerical model data, the tool will assist the designer in organizing, stating, and tracking system requirements.

Briggs, Hugh C.↗
NASA NTRS1957

Preliminary Internal Performance Data for a Variable-Ejector Assembly on the XJ79-GE-1 Turbojet Engine: Afterburning Configurations - II

Internal performance of an XJ79-GE-1 variable ejector was experimentally determined with the primary nozzle in two representative after-burning positions. Jet-thrust and air-handling data were obtained in quiescent air for 4 selected ejector configurations over a wide range of secondary to primary airflow ratios and primary-nozzle pressure ratios. The experimental ejector data are presented in both graphical and tabulated form.

Bloomer, Harry E.↗
DOE OSTI2023

Terabase-Scale Coassembly of a Tropical Soil Microbiome

Petabases of reads are being produced by environmental metagenome sequencing. An essential step in analyzing these data is metagenome assembly, the computational reconstruction of genome sequences from microbial communities. “Coassembly” of metagenomic sequence data, in which multiple samples are assembled together, enables more complete detection of microbial genomes in an environment than “multiassembly,” in which samples are assembled individually.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Resonance Parameter Evaluation of n + 88 Sr reactions for ENDF/B-VIII.1 Library

An evaluation of n+ 88 Sr reactions up to 950 keV was compiled from a publicly available set of resonance parameters. Starting from the repository of the ENDF/B-VIII.0 library, an evaluated nuclear data file was assembled and submitted for inclusion to the Evaluated Nuclear Data File (ENDF)/B-VIII.1 release. This evaluation features an external function representation defined by pole strengths and R ∞ parameters over the entire resolved resonance range. This work improves the modeling of the R-matrix parameterization from multi-Level Breit-Wigner resonance parameters to Reich-Moore formalism, and it also extends thrice the upper energy range of the current ENDF/B-VIII.0 resolved resonance evaluation.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
NASA NTRS1988

High-speed assembly language (80386/80387) programming for laser spectra scan control and data acquisition providing improved resolution water vapor spectroscopy

An assembly language program using the Intel 80386 CPU and 80387 math co-processor chips was written to increase the speed of data gathering and processing, and provide control of a scanning CW ring dye laser system. This laser system is used in high resolution (better than 0.001 cm-1) water vapor spectroscopy experiments. Laser beam power is sensed at the input and output of white cells and the output of a Fabry-Perot. The assembly language subroutine is called from Basic, acquires the data and performs various calculations at rates greater than 150 faster than could be performed by the higher level language. The width of output control pulses generated in assembly language are 3 to 4 microsecs as compared to 2 to 3.7 millisecs for those generated in Basic (about 500 to 1000 times faster). Included are a block diagram and brief description of the spectroscopy experiment, a flow diagram of the Basic and assembly language programs, listing of the programs, scope photographs of the computer generated 5-volt pulses used for control and timing analysis, and representative water spectrum curves obtained using these programs.

Allen, Robert J.↗
NASA NTRS1984

Availability of the DSN Telemetry Data System and Its Major Elements, Including the TWM Assemblies

The DSN discrepancy report system which records all outages of DSN data systems that occur during mission support operations is described. The recorded outages of the telemetry data system for 1981 through 1983 were tabulated and availability characteristics of the telemetry data system and several of its major elements, including the traveling wave maser (TWM) Assemblies were developed. Availability characteristics of the TWM assemblies are compared with those of other DSN subsystems and assemblies. It is found that for a three year period, the availability of the telemetry data system is 99.0%, and its mean time to restore service is 0.9 hours; the availability of the TWM assemblies is 99.83%, and their mean time to restore service is 2.5 hours.

Stevens, R.↗
DOE OSTI2023

Kinetic Growth of Multicomponent Microcompartment Shells

An important goal of systems and synthetic biology is to produce high value chemical species in large quantities. Microcompartments, which are protein nanoshells encapsulating catalytic enzyme cargo, could potentially function as tunable nanobioreactors inside and outside cells to generate these high value species. Modifying the morphology of microcompartments through genetic engineering of shell proteins is one viable strategy to tune cofactor and metabolite access to encapsulated enzymes. However, this is a difficult task without understanding how changing interactions between the many different types of shell proteins and enzymes affect microcompartment assembly and shape. Here, we use multiscale molecular dynamics and experimental data to describe assembly pathways available to microcompartments composed of multiple types of shell proteins with varied interactions. As the average interaction between the enzyme cargo and the multiple types of shell proteins is weakened, the shell assembly pathway transitions from (i) nucleating on the enzyme cargo to (ii) nucleating in the bulk and then binding the cargo as it grows to (iii) an empty shell. Atomistic simulations and experiments using the 1,2-propanediol utilization microcompartment system demonstrate that shell protein interactions are highly varied and consistent with our multicomponent, coarse-grained model. Furthermore, our results suggest that intrinsic bending angles control the size of these microcompartments. Altogether, our simulations and experiments provide guidance to control microcomparmtent size and assembly by modulating the interactions between shell proteins.

defects↗
NASA NTRS1981

CIRSS vertical data integration, San Bernardino County study phases 1-A, 1-B

User needs, data types, data automation, and preliminary applications are described for an effort to assemble a single data base for San Bernardino County from data bases which exist at several administrative levels. Each of the data bases used was registered and converted to a grid-based data file at a resolution of 4 acres and used to create a multivariable data base for the entire study area. To this data base were added classified LANDSAT data from 1976 and 1979. The resulting data base thus integrated in a uniform format all of the separately automated data within the study area. Several possible interactions between existing geocoded data bases and LANDSAT data were tested. The use of LANDSAT to update existing data base is to be tested.

Christenson, J.↗
NASA NTRS1985

Determining Availability Characteristics of DSN Data Systems Using Discrepancy Report Data

A reasonably economical way was developed to determine availability characteristics of Deep Space Network (DSN) data systems, subsystems, and assemblies using the DSN discrepancy report (DR) data base and DSN operating schedule and history data bases. Operating mean time between failures (OMTBF), operating mean time to restore service (OMTTRS), and operating functional availability (OFA) can be computed by year, by system, by subsystem, by assembly, and by station. The effort required to produce the desired reports is described, specific data on the telemetry, command, and tracking systems are presented, and major contributors to system outages are identified. Future improvements in preparing and analyzing DR data are also outlined to enhance their use in correcting conditions that lead to outages.

Ruskin, A. M.↗