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At least 199 records · Page 11

How do Early Age Geopolymers Respond to Gamma Irradiation Exposure? - 19515

Geopolymers have been proposed by the UK nuclear industry as a potential replacement for the currently accepted blend of Portland cement and supplementary cementitious materials, such as fly ash and blast furnace slag. This preferred grouting system is not ideal for the encapsulation of some problematic waste streams, such as oils and reactive metals. Metakaolin based geopolymers have been selected as the alternative grouting system, as this mitigates the supply risk which is currently associated with the supplementary cementitious materials described above. To allow these systems to be used as an alternative nuclear grouting system, the effect of irradiation on the 'neat' grout needs to be understood. The majority of the literature appears to present studies of the irradiation of aged grouts (3 - 7 days). This study will assess samples that have been irradiated at early age curing (20 hours). The effects of clay type and total dose will also be studied, and a comparison between the effects of rotary and flash calcined clays, irradiated to doses up to 1 MGy will be presented. The thermogravimetry data indicates that irradiation promotes the liberation of water and also the formation of carbonate species. The rotary calcined metakaolin liberates more water than the flash calcined metakaolin. Therefore, it is expected that the flash calcined system is more stable to irradiation. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

A Scaling Analysis of Post-Detonation Mixing With Detailed Chemical Kinetics

This report documents a scaling study of hemispherical pentaerythritol tetranitrate explosives detonated in ambient air. The focus is on the mixing layer and evolution of the chemical species. The HyBurn code developed at the University of Florida is used to simulate center initiated 12, 38, 120, and 1200 mm diameter charges. The results show blast structures commonly found in the literature. Azimuthal averaging is used to radially average the flow variables to get mean values. The charges exhibit self-similar behavior at early times in a primarily gas dynamic regime, but discrepancies between the scales form at later times due to the finite rate chemistry. The turbulent mixing layer is calculated and used to define a region to conditionally average by mixture fraction. The results of the conditional averages imply a transition from a kinetic-limited regime to a mixing-limited regime with increasing scale. The scaling of the total heat release rate confirms an early time gas dynamic regime, and a later time regime where mixing and chemistry becomes impactful.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Selection of site specific vibration equation by using analytic hierarchy process in a quarry

This paper presents a new approach for the selection of the most accurate SSVA (Site Specific Vibration Attenuation) equation for blasting processes in a quarry located near settlements in Istanbul, Turkey. In this context, the SSVA equations obtained from the same study area in the literature were considered in terms of distance between the shot points and buildings and the amount of explosive charge. In this purpose, 11 different SSVA equations obtained from the study area in the past 12 years, forecasting capabilities according to designated new conditions, using 102 vibration records as test data obtained from the study area was investigated. In this study, AHP (Analytic Hierarchy Process) was selected as an analysis method in order to determine the most accurate equation among 11 SSAV equations, and the parameters such as year, distance, charge, and r{sup 2} of the equations were used as criteria for AHP. Finally, the most appropriate equation was selected among the existing ones, and the process of selecting according to different target criteria was presented. Furthermore, it was noted that the forecasting results of the selected equation is more accurate than that formed using the test results. - Highlights: • The optimum Site Specific Vibration Attenuation equation for blasting in a quarry located near settlements was determined. • It is indicated that SSVA equations changing over the years don’t give always accurate estimates at changing conditions. • Selection of the blast induced SSVA equation was made using AHP. • Equation selection method was highlighted based on parameters such as charge, distance, and quarry geometry changes (year).

54 ENVIRONMENTAL SCIENCES↗

CAFE: A NEW RELATIVISTIC MHD CODE

We introduce CAFE, a new independent code designed to solve the equations of relativistic ideal magnetohydrodynamics (RMHD) in three dimensions. We present the standard tests for an RMHD code and for the relativistic hydrodynamics regime because we have not reported them before. The tests include the one-dimensional Riemann problems related to blast waves, head-on collisions of streams, and states with transverse velocities, with and without magnetic field, which is aligned or transverse, constant or discontinuous across the initial discontinuity. Among the two-dimensional (2D) and 3D tests without magnetic field, we include the 2D Riemann problem, a one-dimensional shock tube along a diagonal, the high-speed Emery wind tunnel, the Kelvin–Helmholtz (KH) instability, a set of jets, and a 3D spherical blast wave, whereas in the presence of a magnetic field we show the magnetic rotor, the cylindrical explosion, a case of Kelvin–Helmholtz instability, and a 3D magnetic field advection loop. The code uses high-resolution shock-capturing methods, and we present the error analysis for a combination that uses the Harten, Lax, van Leer, and Einfeldt (HLLE) flux formula combined with a linear, piecewise parabolic method and fifth-order weighted essentially nonoscillatory reconstructors. We use the flux-constrained transport and the divergence cleaning methods to control the divergence-free magnetic field constraint.

79 ASTRONOMY AND ASTROPHYSICS↗

GenomeDepot: data management system for microbial comparative genomics

Summary GenomeDepot is an open-source web-based platform for annotation, management, and comparative analysis of microbial genomic sequences and associated data including ortholog families, protein domains, operons, regulatory interactions, strain taxonomy, and sample metadata. GenomeDepot supports rapid creation of websites for user-defined genome collections that include bioinformatic tools for interactive genome browsing, Basic Local Alignment Search Tool (BLAST) search, annotation search, comparative genomic neighborhood visualization, and sequence download. Gene function annotations are generated by a customizable annotation pipeline. The pipeline runs annotation tools in Conda environments and can be easily extended with additional user-specified tools. Availability and implementation GenomeDepot is open source and distributed under the GNU General Public License via GitHub (https://github.com/aekazakov/genome-depot). GenomeDepot is implemented in Python and was tested in Ubuntu Linux. Full installation instructions and documentation are available at https://aekazakov.github.io/genome-depot/. GenomeDepot demo server is freely accessible at https://iseq.lbl.gov/demogd/.

Kazakov, Alexey [Lawrence Berkeley National Labora↗

Apollo 14 inverted pigeonites - Possible samples of lunar plutonic rocks.

Analysis of 'inverted pigeonites' found in Apollo 14 samples 14082 and 14083 (a polymict breccia, the 'white rock') by a combination of optical, electron probe, and single-crystal X-ray diffraction techniques. These 'inverted pigeonites' are regarded as samples of plutonic rocks that have been blasted out of the Imbrium Basin. It is also concluded that lunar pigeonites will invert to orthopyroxenes, given sufficiently slow cooling histories even in very anhydrous environments.

Papike, J. J.↗

Shock response spectra variational analysis for pyrotechnic qualification testing of flight hardware

Shock response spectra data from flight certification tests were analyzed to determine envelope variation with respect to mean values in each axis. An overall variation of + or - 8.61 dB or 169 percent exists for the data. This large variation may be attributed to one or more of the following: (1) Instrumentation problems may exist. (2) Variations in the source charge (blasting caps) such as shape or explosive load may exist. (3) Two blasting caps were used to excite the pyrotechnic plate tester. Delay time between charge firings may have varied. The cause or causes of the variations need to be identified and researched to prevent future pyroshock problems.

Smith, J. L.↗

Aquatic Acoustic Metrics Interface

Fishes and marine mammals may suffer a range of potential effects from exposure to intense underwater sound generated by anthropogenic activities such as pile driving, shipping, sonars, and underwater blasting. Several underwater sound recording (USR) devices have been built to acquire samples of the underwater sound generated by anthropogenic activities. Software becomes indispensable for processing and analyzing the audio files recorded by these USRs. The new Aquatic Acoustic Metrics Interface Utility Software (AAMI) is specifically designed for analysis of underwater sound recordings to provide data in metrics that facilitate evaluation of the potential impacts of the sound on aquatic animals. In addition to the basic functions, such as loading and editing audio files recorded by USRs and batch processing of sound files, the software utilizes recording system calibration data to compute important parameters in physical units. The software also facilitates comparison of the noise sound sample metrics with biological measures such as audiograms of the sensitivity of aquatic animals to the sound, integrating various components into a single analytical frame.

Source record↗

Simulation Assisted Risk Assessment Applied to Launch Vehicle Conceptual Design

A simulation-based risk assessment approach is presented and is applied to the analysis of abort during the ascent phase of a space exploration mission. The approach utilizes groupings of launch vehicle failures, referred to as failure bins, which are mapped to corresponding failure environments. Physical models are used to characterize the failure environments in terms of the risk due to blast overpressure, resulting debris field, and the thermal radiation due to a fireball. The resulting risk to the crew is dynamically modeled by combining the likelihood of each failure, the severity of the failure environments as a function of initiator and time of the failure, the robustness of the crew module, and the warning time available due to early detection. The approach is shown to support the launch vehicle design process by characterizing the risk drivers and identifying regions where failure detection would significantly reduce the risk to the crew.

Mathias, Donovan L.↗

Conversion of piston-driven shocks from powerful solar flares to blast waves in the solar wind

Published observational data on 39 combined type-II/type-IV solar radio bursts from the period 1972-1982 are analyzed, with a focus on the potential use of the type-IV burst duration to predict the time of arrival at earth of piston-driven shock waves (extending and modifying the prediction method proposed by Smart and Shea, 1985). The data and analysis results are presented in tables and graphs and characterized in detail. It is found that a typical shock of this type leaves the solar flare at velocity 1560 km/sec and continues for a distance of 0.12 AU, decelerates as it is convected by the solar wind, and has a travel time of about 48.5 h. The mean deviation between predicted and measured arrival times is 1.40 h, with standard deviation 1.25 h.

Pinter, S.↗

Morphological and molecular characterization of fungal pathogen, Magnaphorthe oryzae

Rice is arguably the most crucial food crops supplying quarter of calories intake. Fungal pathogen, Magnaphorthe oryzae promotes blast disease unconditionally to gramineous host including rice species. This disease spurred an outbreaks and constant threat to cereal production. Global rice yield declining almost 10-30% including Malaysia. As Magnaphorthe oryzae and its host is model in disease plant study, the rice blast pathosystem has been the subject of intense interest to overcome the importance of the disease to world agriculture. Therefore, in this study, our prime objective was to isolate samples of Magnaphorthe oryzae from diseased leaf obtained from MARDI Seberang Perai, Penang, Malaysia. Molecular identification was performed by sequences analysis from internal transcribed spacer (ITS) region of nuclear ribosomal RNA genes. Phylogenetic affiliation of the isolated samples were analyzed by comparing the ITS sequences with those deposited in the GenBank database. The sequence of the isolate demonstrated at least 99% nucleotide identity with the corresponding sequence in GenBank for Magnaphorthe oryzae. Morphological observed under microscope demonstrated that the structure of conidia followed similar characteristic as M. oryzae. Finding in this study provide useful information for breeding programs, epidemiology studies and improved disease management.

60 APPLIED LIFE SCIENCES↗

An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models

Abstract Background Sequence alignment lies at the heart of genome sequence annotation. While the BLAST suite of alignment tools has long held an important role in alignment-based sequence database search, greater sensitivity is achieved through the use of profile hidden Markov models (pHMMs). Here, we describe an FPGA hardware accelerator, called HAVAC, that targets a key bottleneck step (SSV) in the analysis pipeline of the popular pHMM alignment tool, HMMER. Results The HAVAC kernel calculates the SSV matrix at 1739 GCUPS on a $$\sim$$ ∼ $3000 Xilinx Alveo U50 FPGA accelerator card, $$\sim$$ ∼ 227× faster than the optimized SSV implementation in nhmmer . Accounting for PCI-e data transfer data processing, HAVAC is 65× faster than nhmmer’s SSV with one thread and 35× faster than nhmmer with four threads, and uses $$\sim$$ ∼ 31% the energy of a traditional high end Intel CPU. Conclusions HAVAC demonstrates the potential offered by FPGA hardware accelerators to produce dramatic speed gains in sequence annotation and related bioinformatics applications. Because these computations are performed on a co-processor, the host CPU remains free to simultaneously compute other aspects of the analysis pipeline.

59 BASIC BIOLOGICAL SCIENCES↗

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Metagenomic studies use high-throughput sequence data to investigate microbial communities in situ. However, considerable challenges remain in the analysis of these data, particularly with regard to speed and reliable analysis of microbial species as opposed to higher level taxa such as phyla. We here present Genometa, a computationally undemanding graphical user interface program that enables identification of bacterial species and gene content from datasets generated by inexpensive high-throughput short read sequencing technologies. Our approach was first verified on two simulated metagenomic short read datasets, detecting 100% and 94% of the bacterial species included with few false positives or false negatives. Subsequent comparative benchmarking analysis against three popular metagenomic algorithms on an Illumina human gut dataset revealed Genometa to attribute the most reads to bacteria at species level (i.e. including all strains of that species) and demonstrate similar or better accuracy than the other programs. Lastly, speed was demonstrated to be many times that of BLAST due to the use of modern short read aligners. Our method is highly accurate if bacteria in the sample are represented by genomes in the reference sequence but cannot find species absent from the reference. This method is one of the most user-friendly and resource efficient approaches and is thus feasible for rapidly analysing millions of short reads on a personal computer.

59 BASIC BIOLOGICAL SCIENCES↗

DISTRIBUTION COEFICIENTS (KD) GENERATED FROM A CORE SAMPLE COLLECTED FROM THE SALTSTONE DISPOSAL FACILITY

Core samples originating from Vault 4, Cell E of the Saltstone Disposal Facility (SDF) were collected in September of 2008 (Hansen and Crawford 2009, Smith 2008) and sent to SRNL to measure chemical and physical properties of the material including visual uniformity, mineralogy, microstructure, density, porosity, distribution coefficients (K{sub d}), and chemical composition. Some data from these experiments have been reported (Cozzi and Duncan 2010). In this study, leaching experiments were conducted with a single core sample under conditions that are representative of saltstone performance. In separate experiments, reducing and oxidizing environments were targeted to obtain solubility and Kd values from the measurable species identified in the solid and aqueous leachate. This study was designed to provide insight into how readily species immobilized in saltstone will leach from the saltstone under oxidizing conditions simulating the edge of a saltstone monolith and under reducing conditions, targeting conditions within the saltstone monolith. Core samples were taken from saltstone poured in December of 2007 giving a cure time of nine months in the cell and a total of thirty months before leaching experiments began in June 2010. The saltstone from Vault 4, Cell E is comprised of blast furnace slag, class F fly ash, portland cement, and Deliquification, Dissolution, and Adjustment (DDA) Batch 2 salt solution. The salt solution was previously analyzed from a sample of Tank 50 salt solution and characterized in the 4QCY07 Waste Acceptance Criteria (WAC) report (Zeigler and Bibler 2009). Subsequent to Tank 50 analysis, additional solution was added to the tank solution from the Effluent Treatment Project as well as from inleakage from Tank 50 pump bearings (Cozzi and Duncan 2010). Core samples were taken from three locations and at three depths at each location using a two-inch diameter concrete coring bit (1-1, 1-2, 1-3; 2-1, 2-2, 2-3; 3-1, 3-2, 3-3) (Hansen and Crawford 2009). Leaching experiments were conducted with a section of core sample 3-2. All cores from location 3 were drilled without using water. Core sample 3-2 was drilled from approximately six inches to a depth of approximately 13 inches. Approximately six inches of the core was removed but it broke into two pieces during removal from the bit. At the time of drilling, core material appeared olive green in color (Smith 2008). The fact that the samples were cored as olive green and were received after storage with a gray outer layer is indicative that some oxidation had occurred prior to leaching studies.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Pressure waves generated by steady flames.

Analysis of pressure waves that can be generated by clouds of explosive gas mixtures in a free atmosphere which is initially at a uniform state. The treatment is restricted only to the final stage of constant flame velocity when the flowfield is self-similar. By the introduction of reduced blast-wave parameters as phase-plane coordinates, the problem is resolved into the determination of the appropriate integral curves on this plane. Results, including space profiles of gasdynamic parameters, have been computed for a specific case of a hydrocarbon-air mixture characterized by a specific heat ratio of 1.3, sound speed at NTP of 345 m/sec, and volumetric expansion ratio corresponding to constant pressure deflagration of 7. Maximum overpressure ratios that can be generated by such flames in point-and line-symmetrical waves range from .00053, for the lower bound in the burning speed, up to 6 for the deflagration, while, for the average speeds of 5 to 10 m/sec, they are at a level of 0.05 to 0.10.

Kuhl, A. L.↗

Chemical Blast Standard (1 kg)

Chemical explosions create blast waves with large overpressure disturbances. It is important to develop a standard blast model based on data to accurately predict acoustic blast-wave amplitudes near detonations and invert for explosion energy from distant observations of blast-wave signals. However, open data from large, controlled chemical explosions with reliable ground truth can be challenging to find. The lack of access to such data could limit the number of contributions to related research and potentially stifle the rate of discoveries or validation of existing models. Here, to address these data scarcity problem, we have curated and compiled a standardized set of 817 blast-wave waveforms from 19 distinct high-explosive events. The blast-wave waveforms are standardized to a 1 kg trinitrotoluene explosion using scaling laws and corrections for location effects. A brief overview of the dataset is presented along with explosion feature models as well as recommendations for extracting explosion features. The resulting dataset is distributed to an open repository in both Seismic Analysis Code and pandas DataFrame formats containing the waveforms, the scaled distances, and the sample rates.

58 GEOSCIENCES↗

Proximal ecological effects of the 1980 eruptions of Mount St. Helens

The diversity of ecosystems and volcanic processes involved in the 1980 eruptions of Mount St. Helens, southwest Washington, provide an excellent setting for examining effects of volcanic events on ecosystems. These eruptions included a lateral blast, debris avalanche, mudflows, pyroclastic flows, and airfall tephra. Affected ecosystems within 30 km of the vent were lakes, streams, upland and riparian forest, and meadows. Ecological disturbances imposed by the Mount St. Helens events were predominantly physical, rather than climatic or chemical which are the dominant classes of disturbances considered in analysis of global catastrophes. Analysis of ecosystem response to disturbance should be based on consideration of composition and structure of the predisturbance system in terms that represent potential survivability of organisms, mechanisms in the primary disturbance, initial survivors, secondary disturbances arising from the primary disturbance and the biological responses to secondary disturbances, invasion of the site by new propagules, interactions among secondary disturbance processes and surviving and invading organisms. Predicting ecosystem response to disturbance is enchanced by considering the mechanisms of disturbance rather than type of disturbance. In the 1980 Mount St. Helens events, the disturbance types, involved primarily the mechanisms of sedimentation, heating, and shear stress. Each disturbance type involved one or more mechanisms. Ecosystem response varied greatly across the landscape. Analysis of ecosystem response to disturbance, regardless of type, should include detailed consideration of the properties of individual species, primary and secondary disturbance mechanisms, and their distributions across landscapes.

Swanson, F. J.↗

High Pressure Water Stripping Using Multi-Orifice Nozzles

The use of multi-orifice rotary nozzles greatly increases the speed and stripping effectiveness of high pressure water blasting systems, but also greatly increases the complexity of selecting and optimizing the operating parameters. The rotational speed of the nozzle must be coupled with its transverse velocity as it passes across the surface of the substrate being stripped. The radial and angular positions of each orifice must be included in the analysis of the nozzle configuration. Orifices at the outer edge of the nozzle head move at a faster rate than the orifices located near the center. The energy transmitted to the surface from the impact force of the water stream from an outer orifice is therefore spread over a larger area than energy from an inner orifice. Utilizing a larger diameter orifice in the outer radial positions increases the total energy transmitted from the outer orifice to compensate for the wider distribution of energy. The total flow rate from the combination of all orifices must be monitored and should be kept below the pump capacity while choosing orifice to insert in each position. The energy distribution from the orifice pattern is further complicated since the rotary path of all the orifices in the nozzle head pass through the center section. All orifices contribute to the stripping in the center of the path while only the outer most orifice contributes to the stripping at the edge of the nozzle. Additional orifices contribute to the stripping from the outer edge toward the center section. With all these parameters to configure and each parameter change affecting the others, a computer model was developed to track and coordinate these parameters. The computer simulation graphically indicates the cumulative affect from each parameter selected. The result from the proper choices in parameters is a well designed, highly efficient stripping system. A poorly chosen set of parameters will cause the nozzle to strip aggressively in some areas while leaving the coating untouched in adjacent sections. The high pressure water stripping system can be set to extremely aggressive conditions allowing stripping of hard to remove adhesives, paint systems, and even cladding and chromate conversion coatings. The energy force can also be reduced to strip coatings from thin aluminum substrates without causing any damage or deterioration to the substrate's surface. High pressure water stripping of aerospace components has thus proven to be an efficient and cost effective method for cleaning and removing coatings.

Hoppe, David↗