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At least 199 records · Page 11

Feature-agnostic metabolomics for determining effective subcytotoxic doses of common pesticides in human cells

Although classical molecular biology assays can provide a measure of cellular response to chemical challenges, they rely on a single biological phenomenon to infer a broader measure of cellular metabolic response. These methods do not always afford the necessary sensitivity to answer questions of subcytotoxic effects, nor do they work for all cell types. Likewise, boutique assays such as cardiomyocyte beat rate may indirectly measure cellular metabolic response, but they too, are limited to measuring a specific biological phenomenon and are often limited to a single cell type. For these reasons, toxicological researchers need new approaches to determine metabolic changes across various doses in differing cell types, especially within the low-dose regime. Here, the data collected herein demonstrate that LC-MS/MS-based untargeted metabolomics with a feature-agnostic view of the data, combined with a suite of statistical methods including an adapted environmental threshold analysis, provides a versatile, robust, and holistic approach to directly monitoring the overall cellular metabolomic response to pesticides. When employing this method in investigating two different cell types, human cardiomyocytes and neurons, this approach revealed separate subcytotoxic metabolomic responses at doses of 0.1 and 1 µM of chlorpyrifos and carbaryl. These findings suggest that this agnostic approach to untargeted metabolomics can provide a new tool for determining effective dose by metabolomics of chemical challenges, such as pesticides, in a direct measurement of metabolomic response that is not cell type-specific or observable using traditional assays.

59 BASIC BIOLOGICAL SCIENCES↗

Concepts for a theoretical and experimental study of lifting rotor random loads and vibrations. Phase 6-A: Effects of blade torsion, of blade flap bending flexibility and of rotor support flexibility on rotor stability and random response

The effects of lifting rotor blade torsion, blade flap bending flexibility and rotor support flexibility on rotor stability and random response are described. The subjects discussed are: (1) blade representation and method of analysis, (2) random gust response statistics for coupled torsion-flapping rotor blade vibrations, (3) flap bending corrections to the rigid blade analysis of lifting rotors, and (4) effects of rotor support flexibility. The response of linear periodically time varying systems to random excitation is examined.

Hohenemser, K. H.↗

Contact thermal shock test of ceramics

A novel quantitative thermal shock test of ceramics is described. The technique employs contact between a metal-cooling rod and hot disk-shaped specimen. In contrast with traditional techniques, the well-defined thermal boundary condition allows for accurate analyses of heat transfer, stress, and fracture. Uniform equibiaxial tensile stresses are induced in the center of the test specimen. Transient specimen temperature and acoustic emission are monitored continuously during the thermal stress cycle. The technique is demonstrated with soda-lime glass specimens. Experimental results are compared with theoretical predictions based on a finite-element method thermal stress analysis combined with a statistical model of fracture. Material strength parameters are determined using concentric ring flexure tests. Good agreement is found between experimental results and theoretical predictions of failure probability as a function of time and initial specimen temperature.

Rogers, W. P.↗

Application of impact dampers in vibration control of flexible structures

Impact dampers belong to the category of passive vibration devices used to attenuate the vibration of discrete and continuous systems. An impact damper generally consists of a mass which is allowed to travel freely between two defined stops. Under the right conditions, the vibration of the structure to which the impact damper is attached will cause the mass of the impact damper to strike the structure. Previous analytical and experimental research work on the effect of impact dampers in attenuating the vibration of discrete and continuous systems have demonstrated their effectiveness. It has been shown in this study that impact dampers can increase the intrinsic damping of a lightly-damped flexible structure. The test structure consists of a slender flexible beam supported by a pin-type support at one end and supported by a linear helical flexible spring at another location. Sinusoidal excitation spanning the first three natural frequencies was applied in the horizontal plane. The orientation of the excitation and the test structure in the horizontal plane minimizes the effect of gravity on the behavior of the test structure. The excitation was applied using a linear sine sweep technique. The span of the test structure, the mass of the impact damper, the distance of travel, and the location of the impact damper along the span of the test structure were varied. The damping ratio are estimated for sixty test configurations. The results show that the impact damper significantly increases the damping ratio of the test structure. Statistical analysis of the results using the method of multiple linear regression indicates that a reasonable fit has been accomplished. It is concluded that additional experimental analysis of flexible structures in microgravity environment is needed in order to achieve a better understanding of the behavior of impact damper under conditions of microgravity. Numerical solution of the behavior of flexible structures equipped with impact dampers is also needed to predict stresses and deformations under operating conditions of microgravity in space applications.

Akl, Fred A.↗

Application of a data-mining method based on Bayesian networks to lesion-deficit analysis

Although lesion-deficit analysis (LDA) has provided extensive information about structure-function associations in the human brain, LDA has suffered from the difficulties inherent to the analysis of spatial data, i.e., there are many more variables than subjects, and data may be difficult to model using standard distributions, such as the normal distribution. We herein describe a Bayesian method for LDA; this method is based on data-mining techniques that employ Bayesian networks to represent structure-function associations. These methods are computationally tractable, and can represent complex, nonlinear structure-function associations. When applied to the evaluation of data obtained from a study of the psychiatric sequelae of traumatic brain injury in children, this method generates a Bayesian network that demonstrates complex, nonlinear associations among lesions in the left caudate, right globus pallidus, right side of the corpus callosum, right caudate, and left thalamus, and subsequent development of attention-deficit hyperactivity disorder, confirming and extending our previous statistical analysis of these data. Furthermore, analysis of simulated data indicates that methods based on Bayesian networks may be more sensitive and specific for detecting associations among categorical variables than methods based on chi-square and Fisher exact statistics.

NASA Discipline Neuroscience↗

A study of various methods for calculating locations of lightning events

This article reports on the results of numerical experiments on finding the location of lightning events using different numerical methods. The methods include linear least squares, nonlinear least squares, statistical estimations, cluster analysis and angular filters and combinations of such techniques. The experiments involved investigations of methods for excluding fake solutions which are solutions that appear to be reasonable but are in fact several kilometers distant from the actual location. Some of the conclusions derived from the study are that bad data produces fakes, that no fool-proof method of excluding fakes was found, that a short base-line interferometer under development at Kennedy Space Center to measure the direction cosines of an event shows promise as a filter for excluding fakes. The experiments generated a number of open questions, some of which are discussed at the end of the report.

Cannon, John R.↗

Redshift data and statistical inference

Frequency histograms and the 'power spectrum analysis' (PSA) method, the latter developed by Yu & Peebles (1969), have been widely employed as techniques for establishing the existence of periodicities. We provide a formal analysis of these two classes of methods, including controlled numerical experiments, to better understand their proper use and application. In particular, we note that typical published applications of frequency histograms commonly employ far greater numbers of class intervals or bins than is advisable by statistical theory sometimes giving rise to the appearance of spurious patterns. The PSA method generates a sequence of random numbers from observational data which, it is claimed, is exponentially distributed with unit mean and variance, essentially independent of the distribution of the original data. We show that the derived random processes is nonstationary and produces a small but systematic bias in the usual estimate of the mean and variance. Although the derived variable may be reasonably described by an exponential distribution, the tail of the distribution is far removed from that of an exponential, thereby rendering statistical inference and confidence testing based on the tail of the distribution completely unreliable. Finally, we examine a number of astronomical examples wherein these methods have been used giving rise to widespread acceptance of statistically unconfirmed conclusions.

Newman, William I.↗

Design and analysis of numerical experiments

Methods for the design and analysis of numerical experiments that are especially useful and efficient in multidimensional parameter spaces are presented. The analysis method, which is similar to kriging in the spatial analysis literature, fits a statistical model to the output of the numerical model. The method is applied to a fully nonlinear, global, equivalent-barotropic dynamical model. The statistical model also provides estimates for the uncertainty of predicted numerical model output, which can provide guidance on where in the parameter space to conduct further experiments, if necessary. The method can provide significant improvements in the efficiency with which numerical sensitivity experiments are conducted.

Bowman, Kenneth P.↗

VAPEPS Management Center

A VibroAcoustic Payload Environment Prediction System (VAPEPS) Management Center is established and being maintained at JPL. VAPEPS is a computer program that utilizes statistical energy analysis (SEA) theory and SEA extrapolation methods to predict the vibroacoustic environments of complex systems. The program is commonly utilized to establish random vibration and acoustic test requirements for aerospace components exposed to launch environments. It can also be used in the payload or launch vehicle design process for control or mitigation of the launch or on-orbit vibration and acoustic environments, as well as to calculate acoustically induced stresses in structures such as solar panels and reflectors.

VAPEPS↗

Machine learning for single-ended event reconstruction in PROSPECT experiment

The Precision Reactor Oscillation and Spectrum Experiment, PROSPECT, was a segmented antineutrino detector that successfully operated at the High Flux Isotope Reactor in Oak Ridge, TN, during its 2018 run. Despite challenges with photomultiplier tube base failures affecting some segments, innovative machine learning approaches were employed to perform position and energy reconstruction, and particle classification. This work highlights the effectiveness of convolutional neural networks and graph convolutional networks in enhancing data analysis. By leveraging these techniques, a 3.3% increase in effective statistics was achieved compared to traditional methods, showcasing their potential to improve analysis performance. Furthermore, these machine learning methodologies offer promising applications for other segmented particle detectors, underscoring their versatility and impact.

47 OTHER INSTRUMENTATION↗

Models of space averaged energetics of plates

The analysis of high frequency vibrations in plates is of particular interest in the study of structure borne noise in aircrafts. The current methods of analysis are either too expensive (finite element method) or may have a confidence band wider than desirable (Statistical Energy Analysis). An alternative technique to model the space and time averaged response of structural acoustics problems with enough detail to include all significant mechanisms of energy generation, transmission, and absorption is highly desirable. The focus of this paper is the development of a set of equations which govern the space and time averaged energy density in plates. To solve this equation, a new type of boundary value problem must be treated in terms of energy density variables using energy and intensity boundary conditions. A computer simulation verification study of the energy governing equation is performed. A finite element formulation of the new equations is also implemented and several test cases are analyzed and compared to analytical solutions.

Bouthier, O. M.↗

The Statistical Consulting Center for Astronomy (SCCA)

The process by which raw astronomical data acquisition is transformed into scientifically meaningful results and interpretation typically involves many statistical steps. Traditional astronomy limits itself to a narrow range of old and familiar statistical methods: means and standard deviations; least-squares methods like chi(sup 2) minimization; and simple nonparametric procedures such as the Kolmogorov-Smirnov tests. These tools are often inadequate for the complex problems and datasets under investigations, and recent years have witnessed an increased usage of maximum-likelihood, survival analysis, multivariate analysis, wavelet and advanced time-series methods. The Statistical Consulting Center for Astronomy (SCCA) assisted astronomers with the use of sophisticated tools, and to match these tools with specific problems. The SCCA operated with two professors of statistics and a professor of astronomy working together. Questions were received by e-mail, and were discussed in detail with the questioner. Summaries of those questions and answers leading to new approaches were posted on the Web (www.state.psu.edu/ mga/SCCA). In addition to serving individual astronomers, the SCCA established a Web site for general use that provides hypertext links to selected on-line public-domain statistical software and services. The StatCodes site (www.astro.psu.edu/statcodes) provides over 200 links in the areas of: Bayesian statistics; censored and truncated data; correlation and regression, density estimation and smoothing, general statistics packages and information; image analysis; interactive Web tools; multivariate analysis; multivariate clustering and classification; nonparametric analysis; software written by astronomers; spatial statistics; statistical distributions; time series analysis; and visualization tools. StatCodes has received a remarkable high and constant hit rate of 250 hits/week (over 10,000/year) since its inception in mid-1997. It is of interest to scientists both within and outside of astronomy. The most popular sections are multivariate techniques, image analysis, and time series analysis. Hundreds of copies of the ASURV, SLOPES and CENS-TAU codes developed by SCCA scientists were also downloaded from the StatCodes site. In addition to formal SCCA duties, SCCA scientists continued a variety of related activities in astrostatistics, including refereeing of statistically oriented papers submitted to the Astrophysical Journal, talks in meetings including Feigelson's talk to science journalists entitled "The reemergence of astrostatistics" at the American Association for the Advancement of Science meeting, and published papers of astrostatistical content.

Akritas, Michael↗

Results of a joint NOAA/NASA sounder simulation study

This paper presents the results of a joint NOAA and NASA sounder simulation study in which the accuracies of atmospheric temperature profiles and surface skin temperature measuremnents retrieved from two sounders were compared: (1) the currently used IR temperature sounder HIRS2 (High-resolution Infrared Radiation Sounder 2); and (2) the recently proposed high-spectral-resolution IR sounder AMTS (Advanced Moisture and Temperature Sounder). Simulations were conducted for both clear and partial cloud conditions. Data were analyzed at NASA using a physical inversion technique and at NOAA using a statistical technique. Results show significant improvement of AMTS compared to HIRS2 for both clear and cloudy conditions. The improvements are indicated by both methods of data analysis, but the physical retrievals outperform the statistical retrievals.

Phillips, N.↗

Mapping the Structure of Heterogeneous Materials

Image-processing microdensitometer/Fourier analyzer yields statistics of subcomponent distribution. Nondestructive method for studying structure heterogeneous materials uses energy-dispersive X-ray analysis in scanning electron microscope. Scanning microdensitometer/Fourier analyzer (SMFA) is applied to SEM images to obtain statistics about sample structure. Method originally developed for studying effect on combustion of fine structure of composite solid propellants.

Strand, L. D.↗

Validation of Linear Covariance Techniques for Mars Entry, Descent, and Landing Guidance and Navigation Performance Analysis

Current Monte Carlo-based uncertainty analysis methods may require significant computational resources to evaluate the performance of a closed-loop guidance, navigation, and control system. An attractive alternative, particularly during the preliminary and conceptual design phase, is to use linear covariance analysis, which can provide the same statistical information as Monte Carlo methods at a fraction of the computational load. Linear covariance has already been demonstrated in various spaceflight regimes, but only recently has it been applied to atmospheric flight. In this study, a 6-degree-of-freedom formulation of both a linear covariance and Monte Carlo analysis tools are utilized for a Mars entry, descent, and landing scenario which capture both atmospheric and powered flight phases to support precision landing. Comparison of the performance results shows close agreement between the linear covariance and traditional Monte Carlo methods when incorporating an assortment of guidance algorithms and processing a variety of inertial and relative sensor measurements onboard the lander's navigation filter.

James W. Williams↗

Sensitivity Analysis and Uncertainty Quantification of a Mars Ascent Vehicle Concept

The design of a conceptual Mars ascent vehicle is a challenging problem. In order to aid the vehicle and mission concept design it is important to understand the driving design parameters and the expected performance in the presence of model errors and uncertainties. An existing six degree of freedom simulation model is analyzed on a statistical basis using the methods available in the Design Analysis Kit for Optimization and Terascale Applications toolkit. The methods utilized include conventional Monte Carlo techniques, metamodeling via polynomial chaos expansions, and global variance-based sensitivity analyses. Two additional analysis methods referred to as “Monte Carlo filtering” and ”Classification trees” are used to determine which uncertain parameters are driving the performance of the vehicle. Monte Carlo filtering provides a methodology to determine which parameters cause qualitatively different behavior while the classification trees use heuristics to partition the input space and assign probabilities to each partition. These methods serve as qualitative descriptors of model sensitivity while variance-based global sensitivity analysis seeks a quantitative mapping from total output variance to the variance of individual inputs. Application of these techniques to several outputs of a Mars ascent vehicle concept simulation indicates that only a select few input factors dominate their variance.

Noyes, Connor↗