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At least 199 records · Page 11

The Contribution of Proton-Donor pKa on Reactivity Profiles of [FeFe]-hydrogenases

The [FeFe]-hydrogenases are enzymes that catalyze the reversible activation of H 2 coupled to the reduction–oxidation of electron carriers. Members of the different taxonomic groups of [FeFe]-hydrogenases display a wide range of preference, or bias, for H 2 oxidation or H 2 production reactions, despite sharing a common catalytic cofactor, or H-cluster. Identifying the properties that control reactivity remains an active area of investigation, and models have emerged that include diversity in the catalytic site coordination environments and compositions of electron transfer chains. The kinetics of proton-coupled electron transfer at the H-cluster might be expected to be a point of control of reactivity. To test this hypothesis, systematic changes were made to the conserved cysteine residue that functions in proton exchange with the H-cluster in the three model enzymes: CaI, CpII, and CrHydA1. CaI and CpII both employ electron transfer accessory clusters but differ in bias, whereas CrHydA1 lacks accessory clusters having only the H-cluster. Changing from cysteine to either serine (more basic) or aspartate (more acidic) modifies the sidechain pKa and thus the barrier for the proton exchange step. The reaction rates for H 2 oxidation or H 2 evolution were surveyed and measured for model [FeFe]-hydrogenases, and the results show that the initial proton-transfer step in [FeFe]-hydrogenase is tightly coupled to the control of reactivity; a change from cysteine to more basic serine favored H 2 oxidation in all enzymes, whereas a change to more acidic aspartate caused a shift in preference toward H 2 evolution. Overall, the changes in reactivity profiles were profound, spanning 10 5 in ratio of the H 2 oxidation-to-H 2 evolution rates. The fact that the change in reactivity follows a common trend implies that the effect of changing the proton-transfer residue pKa may also be framed as an effect on the scaling relationship between the H-cluster di(thiolmethyl)amine (DTMA) ligand pKa and E m values of the H-cluster. Experimental observations that support this relationship, and how it relates to catalytic function in [FeFe]-hydrogenases, are discussed.

59 BASIC BIOLOGICAL SCIENCES↗

Does jackknife scale really matter for accurate large-scale structure covariances?

ABSTRACT The jackknife method gives an internal covariance estimate for large-scale structure surveys and allows model-independent errors on cosmological parameters. Using the SDSS-III BOSS CMASS sample, we study how the jackknife size and number of resamplings impact the precision of the covariance estimate on the correlation function multipoles and the error on the inferred baryon acoustic scale. We compare the measurement with the MultiDark Patchy mock galaxy catalogues, and we also validate it against a set of lognormal mocks with the same survey geometry. We build several jackknife configurations that vary in size and number of resamplings. We introduce the Hartlap factor in the covariance estimate that depends on the number of jackknife resamplings. We also find that it is useful to apply the tapering scheme to estimate the precision matrix from a limited number of resamplings. The results from CMASS and mock catalogues show that the error estimate of the baryon acoustic scale does not depend on the jackknife scale. For the shift parameter α, we find an average error of 1.6 per cent, 2.2 per cent and 1.2 per cent, respectively, from CMASS, Patchy, and lognormal jackknife covariances. Despite these uncertainties fluctuate significantly due to some structural limitations of the jackknife method, our α estimates are in reasonable agreement with published pre-reconstruction analyses. Jackknife methods will provide valuable and complementary covariance estimates for future large-scale structure surveys.

Favole, Ginevra (ORCID:000000028218563X)↗

A comparison of effective field theory models of redshift space galaxy power spectra for DESI 2024 and future surveys

In preparation for the next generation of galaxy redshift surveys, and in particular the year-one data release from the Dark Energy Spectroscopic Instrument (DESI), we investigate the consistency of a variety of effective field theory models that describe the galaxy-galaxy power spectra in redshift space into the quasi-linear regime using 1-loop perturbation theory. These models are employed in the pipelines velocileptors, PyBird, and Folpsν. While these models have been validated independently, a detailed comparison with consistent choices has not been attempted. After briefly discussing the theoretical differences between the models we describe how to provide a more apples-to-apples comparison between them. We present the results of fitting mock spectra from the AbacusSummit suite of N-body simulations provided in three redshift bins to mimic the types of dark time tracers targeted by the DESI survey. We show that the theories behave similarly and give consistent constraints in both the forward-modeling and ShapeFit compressed fitting approaches. We additionally generate (noiseless) synthetic data from each pipeline to be fit by the others, varying the scale cuts in order to show that the models agree within the range of scales for which we expect 1-loop perturbation theory to be applicable. Finally, this work lays the foundation of Full-Shape analysis with DESI Y1 galaxy samples where in the tests we performed, we found no systematic error associated with the modeling of the galaxy redshift space power spectrum for this volume.

79 ASTRONOMY AND ASTROPHYSICS↗

Long-lived particles: theory and experimental probes

Long-lived particles (LLPs) are particles that are stable or that live long enough for their decays to be experimentally distinguishable in time or position from their production point. We provide an overview of the phenomenology and experimental signatures of LLPs, focusing on LLPs at the Large Hadron Collider (LHC). We explain what determines a particle's lifetime and we show that LLPs are ubiquitous both within the Standard Model and beyond. We survey the methods used to experimentally detect and characterize particles at collider-based experiments, and discuss how searches for LLPs present both experimental challenges and exciting new possibilities for detection. Finally, we situate LHC searches for LLPs within the broader experimental landscape with a brief overview of searches for LLPs at lower-energy experiments and a discussion of astrophysical and cosmological probes offering complementary insight into the physics of LLPs beyond the Standard Model.

Jeanty, Laura [University of Oregon]↗

Ecological Insights from Transferable Plant Biomass Mapping across the Arctic using High-resolution Structure-from-Motion and LiDAR Data

Warmer temperatures, permafrost thaw, and increased wildfire activity are driving rapid ecological change across the Arctic, significantly altering plant productivity and aboveground biomass (AGB). These rapid changes highlight the urgent need to improve monitoring of vegetation dynamics in the Earth’s northern ecosystems, where high spatiotemporal heterogeneity occurs at scales finer than those captured by traditional satellite observations. The growing use of Unoccupied Aerial Systems (UASs) presents an opportunity to overcome this limitation. Yet, the diversity of UAS platforms, sensors, and data collection and processing workflows presents challenges for developing standardized, generalizable approaches. To address this challenge, we compiled 672 AGB plots co-located with 183 UAS-based Structure-from-Motion (SfM) or Light Detection and Ranging (LiDAR) surveys collected across the Arctic. Here, we: (1) evaluated the generalizability of UAS-derived canopy structure derived from high-resolution SfM and LiDAR for estimating AGB, (2) assessed scaling errors and their sources in two recent satellite-based AGB products derived from Landsat and MODIS, and (3) demonstrated the use of high-resolution AGB maps to quantify biomass variation across tundra plant functional types (PFTs) and to monitor post-fire recovery. Our results show that both SfM and LiDAR accurately captured AGB and its variability across tundra PFTs using a Random Forest (RF) model (overall RMSE: 0.336 kg/m2), with mapping performance varying slightly by region and data source. Using UAS-derived AGB maps as a benchmark, we identified systematic biases in satellite-derived AGB products, largely attributable to the magnitude of AGB and structural heterogeneity within coarse-resolution pixels. Applying our model to repeat UAS surveys following a tundra fire on Seward Peninsula, we observed rapid AGB recovery in non-shrub patches, with biomass recovering to pre-fire levels within 2 years. In contrast, shrub patches recovered more slowly, with AGB gains continuing over 2–4 years through both in-patch growth and lateral expansion (via dispersal) into remaining burned areas. Overall, these findings demonstrate the generalizability of UAS-based SfM and LiDAR data for estimating tundra AGB and highlight the potential of our approach to be broadly applied to generate high-quality AGB data for ecological monitoring and model benchmarking across the Arctic.

Yang, Daryl [ORNL] (ORCID:0000000317057823)↗

Field Testing of a Mixed Potential IoT Sensor Platform for Methane Quantification

Emissions of CH 4 from natural gas infrastructure must urgently be addressed to mitigate its effect on global climate. With hundreds of thousands of miles of pipeline in the US used to transport natural gas, current methods of surveying for leaks are inadequate. Mixed potential sensors are a low cost, field deployable technology for remote and continuous monitoring of natural gas infrastructure. We demonstrate for the first time a field trial of a mixed potential sensor device coupled with machine learning and internet-of-things platform at Colorado State University’s Methane Emissions Technology Evaluation Center (METEC). Emissions were detected from a simulated buried underground pipeline source. Sensor data was acquired and transmitted from the field test site to a remote cloud server. Quantification of concentration as a function of vertical distance is consistent with previously reported transport modelling efforts and experimental surveys of methane emissions by more sophisticated CH 4 analyzers.

03 NATURAL GAS↗

Modeling neutrino-induced scale-dependent galaxy clustering for photometric galaxy surveys

Abstract The increasing statistical precision of photometric redshift surveys requires improved accuracy of theoretical predictions for large-scale structure observables to obtain unbiased cosmological constraints. In ΛCDM cosmologies, massive neutrinos stream freely at small cosmological scales, suppressing the small-scale power spectrum. In massive neutrino cosmologies, galaxy bias modeling needs to accurately relate the scale-dependent growth of the underlying matter field to observed galaxy clustering statistics. In this work, we implement a computationally efficient approximation of the neutrino-induced scale-dependent bias (NISDB). Through simulated likelihood analyses of Dark Energy Survey Year 3 (DESY3) and Legacy Survey of Space and Time Year 1 (LSSTY1) synthetic data that contain an appreciable NISDB, we examine the impact of linear galaxy bias and neutrino mass modeling choices on cosmological parameter inference. We find model misspecification of the NISDB approximation and neutrino mass models to decrease the constraining power of photometric galaxy surveys and cause parameter biases in the cosmological interpretation of future surveys. We quantify these biases and devise mitigation strategies.

Astronomy & Astrophysics↗

2001 KIPDA Regional Household Travel Survey

The Kentuckiana Planning and Development Agency (KIPDA) conducted this four-month study from October 2000 through January 2001 to update regional travel demand models. The universe for the survey consisted of households in the five-county Louisville transportation planning study area, including Clark and Floyd counties in Indiana and Bullitt, Jefferson, and Oldham counties in Kentucky. Demographic variables and travel behavior characteristics were collected for 4,433 households in a 24-hour period. Of these, 4,113 were completed with households that were selected at random, and the remaining 320 were completed with representatives. The data from the survey only reflect travel by the selected residents of the five counties listed above and do not account for travel in the region by persons who were not residents of those five counties.

1Hz data↗

Outbreak analysis from case count and survey data

This code enables fitting a model of an infectious disease outbreak, customized for when available data is a combination of case counts and symptom survey responses. This is just a small bit of code being used only for a publication; we need to release it to fulfill a journal's requirement that our work be reproducible.

Goldberg, Emma↗

Cosmology from weak lensing, galaxy clustering, CMB lensing, and tSZ – I. 10 × 2pt modelling methodology

ABSTRACT The overlap of galaxy surveys and cosmic microwave background (CMB) experiments presents an ideal opportunity for joint cosmological data set analyses. In this paper we develop a halo model-based method for the first joint analysis combining these two experiments using 10 correlated two-point functions (10 × 2pt) derived from galaxy position, galaxy shear, CMB lensing convergence, and Compton-y fields. We explore this method using the Vera Rubin Observatory Legacy Survey of Space and Time (LSST) and the Simons Observatory (SO) as examples. We find such LSS × CMB joint analyses lead to significant improvement in Figure-of-Merit of Ωm and S8 over the constraints from using LSS-only probes within Λ cold dark matter (ΛCDM) model. We identify that the shear–y and y–y correlations are the most valuable additions when thermal Sunyaev–Zel’dolvich (tSZ) is included. We further identify the dominant sources of halo model uncertainties in the small-scale modelling, and investigate the impact of halo self-calibration due to the inclusion of small-scale tSZ information.

79 ASTRONOMY AND ASTROPHYSICS↗

Galaxy Spin Classification. I. Z-wise versus S-wise Spirals with the Chirality Equivariant Residual Network

The angular momentum of galaxies (galaxy spin) contains rich information about the initial condition of the universe, yet it is challenging to efficiently measure the spin direction for the tremendous amount of galaxies that are being mapped by ongoing and forthcoming cosmological surveys. We present a machine-learning-based classifier for the Z-wise versus S-wise spirals, which can help to break the degeneracy in the galaxy spin direction measurement. The proposed chirality equivariant residual network (CE-ResNet) is manifestly equivariant under a reflection of the input image, which guarantees that there is no inherent asymmetry between the Z-wise and S-wise probability estimators. We train the model with Sloan Digital Sky Survey images, with the training labels given by the Galaxy Zoo 1 project. A combination of data augmentation techniques is used during the training, making the model more robust to be applied to other surveys. We find an ~30% increase in both types of spirals when Dark Energy Spectroscopic Instrument (DESI) images are used for classification, due to the better imaging quality of DESI. We verify that the ~7σ difference between the numbers of Z-wise and S-wise spirals is due to human bias, since the discrepancy drops to <1.8σ with our CE-ResNet classification results. We discuss the potential systematics relevant to future cosmological applications.

79 ASTRONOMY AND ASTROPHYSICS↗

1998 Dallas-Fort Worth Travel Survey

The 1998 Dallas-Fort Worth House Travel Survey accomplished two main goals: updating existing data for the North Central Texas Council of Governments regional travel demand models and providing new data to permit the models to be upgraded. The survey encompassed households within the Consolidated Metropolitan Statistical Area of Dallas-Fort Worth. A total of 4,641 households provided complete information. The survey revealed households' travel behavior preference with the collection of information about household characteristics and travel using a unique "travel as an activity" approach.

1Hz data↗

Innovative approaches to neutron beam optimization: A case study of FP14 at LANSCE

This paper describes an experimental method to acquire high resolution energy- and spatially- resolved neutron beam spots using the time-gated neutron imaging system with Teledyne Pi-MAX4 camera. These experimental data offer a unique opportunity for benchmarking beam spot simulations. High-quality simulations depend significantly on a high-fidelity geometry model, which can be challenging for legacy facilities. We informed our MCNPX geometry model by latest metrology survey employing Leica laser tracker ATS600. It gave us a high fidelity description of our facility geometry. Such a robust integration of novel tools and methods yields a previously unattainable level of accuracy in both predicting and capturing neutron beam spots, marking a notable advancement over traditional methods reliant on static image plates. Here, to demonstrate the practical application of these tools, we are showing a non-uniform beam spot challenge at our Flight Path 14 (FP14) at the Los Alamos Neutron Science Center (LANSCE). Our precise MCNPX prediction of beam spot shifting as function of neutron energy was confirmed by experimental beam spot measured with extremely high level of detail. Results of this research demonstrate a significant leap in neutron beam optimization at LANSCE and set a new benchmark in beam spot characterization. The advanced methods presented here have potential for adoption at similar research facilities worldwide, aiming at substantial improvement in neutron beam delivery for experiments.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Toward a mechanistic understanding of electrocatalytic nanocarbon

Electrocatalytic nanocarbon (EN) is a class of material receiving intense interest as a potential replacement for expensive, metal-based electrocatalysts for energy conversion and chemical production applications. The further development of EN will require an intricate knowledge of its catalytic behaviors, however, the true nature of their electrocatalytic activity remains elusive. This review highlights work that contributed valuable knowledge in the elucidation of EN catalytic mechanisms. Experimental evidence from spectroscopic studies and well-defined molecular models, along with the survey of computational studies, is summarized to document our current mechanistic understanding of EN-catalyzed oxygen, carbon dioxide and nitrogen electrochemistry. We hope this review will inspire future development of synthetic methods and in situ spectroscopic tools to make and study well-defined EN structures.

36 MATERIALS SCIENCE↗

Particle physics using reactor antineutrinos

Nuclear reactors are uniquely powerful, abundant, and flavor-pure sources of antineutrinos that have played a central role in the discovery of the neutrinos and in elucidation of their properties. Further, this continues through a broad range of experiments investigating topics including Standard Model and short-baseline oscillations, beyond-the-Standard-Model physics searches, and reactor flux and spectrum modelling. This Report will survey the state of the reactor antineutrino physics field and summarize the ways in which current and future reactor antineutrino experiments can play a critical role in advancing the field of particle physics in the next decade.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Beyond Kitaev physics in strong spin-orbit coupled magnets

We review the recent advances and current challenges in the field of strong spin-orbit coupled Kitaev materials, with a particular emphasis on the physics beyond the exactly-solvable Kitaev spin liquid point. To this end, we present a comprehensive overview of the key exchange interactions in candidate materials with a specific focus on systems featuring effective J eff = 1/2 magnetic moments. This includes, but not limited to, 5d 5 iridates, 4d 5 ruthenates and 3d 7 cobaltates. Our exploration covers the microscopic origins of these interactions, along with a systematic attempt to map out the most intriguing correlated regimes of the multi-dimensional parameter space. Our approach is guided by robust symmetry and duality transformations as well as insights from a wide spectrum of analytical and numerical studies. We also survey higher spin Kitaev models and recent exciting results on quasi-one-dimensional models and discuss their relevance to higher-dimensional models. Lastly, we highlight some of the key questions in the field as well as future directions.

Kitaev materials↗

Nucleosynthesis in outflows of compact objects and detection prospects of associated kilonovae

ABSTRACT We perform a comparative analysis of nucleosynthesis yields from binary neutron star (BNS) mergers, black hole-neutron star (BHNS) mergers, and core-collapse supernovae (CCSNe) with the goal of determining which are the most dominant sources of r-process enrichment observed in stars. We find that BNS and BHNS binaries may eject similar mass distributions of robust r-process nuclei post-merger (up to third peak and actinides, A ∼ 200−240), after accounting for the volumetric event rates. Magnetorotational (MR) CCSNe likely undergo a weak r-process (up to A ∼ 140) and contribute to the production of light element primary process (LEPP) nuclei, whereas typical thermal, neutrino-driven CCSNe only synthesize up to first r-process peak nuclei (A ∼ 80−90). We also find that the upper limit to the rate of MR CCSNe is $\lesssim 1~{{\ \rm per\ cent}}$ the rate of typical thermal CCSNe; if the rate was higher, then weak r-process nuclei would be overproduced. Although the largest uncertainty is from the volumetric event rate, the prospects are encouraging for confirming these rates in the next few years with upcoming surveys. Using a simple model to estimate the resulting kilonova light curve from mergers and our set of fiducial merger parameters, we predict that ∼7 BNS and ∼2 BHNS events will be detectable per year by the Vera C. Rubin Observatory (LSST), with prior gravitational wave (GW) triggers.

Astronomy & Astrophysics↗

A spatially resolved spectral analysis of giant radio galaxies with MeerKAT

ABSTRACT In this study we report the spatially resolved, wideband spectral properties of three giant radio galaxies (GRGs) in the COSMOS field: MGTC J095959.63+024608.6, MGTC J100016.84+015133.0, and MGTC J100022.85+031520.4. One of these galaxies, MGTC J100022.85+031520.4, is reported here for the first time, with a projected linear size of 1.29 Mpc at a redshift of 0.1034. Unlike the other two, it is associated with a brightest cluster galaxy (BCG), making it one of the few GRGs known to inhabit cluster environments. We examine the spectral age distributions of the three GRGs using new MeerKAT UHF-band (544–1088 MHz) observations, and L-band (900–1670 MHz) data from the MeerKAT International GHz Tiered Extragalactic Exploration (MIGHTEE) survey. We test two models of spectral ageing, the Jaffe–Perola and Tribble models, using the Broadband Radio Astronomy Tools (brats) software, and find that they agree well with each other. We estimate the Tribble spectral age for MGTC J095959.63+024608.6 as 68 Myr, for MGTC J100016.84+015133.0 as 47 Myr, and for MGTC J100022.85+031520.4 as 67 Myr. We find significant disagreements between these spectral age estimates and the estimates of the dynamical ages of these GRGs, modelled in cluster and group environments. Our results highlight the need for additional processes that are not accounted for in either the dynamic age or the spectral age estimations.

Charlton, K. K. L. (ORCID:0000000229252047)↗