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At least 199 records · Page 11

rustpix

rustpix is a high-performance, open-source Rust library with first-class Python bindings (via PyO3) for processing pixel-detector data in neutron imaging. It targets time-stamping detectors such as Timepix3 (TPX3) at ORNL's Spallation Neutron Source (VENUS beamline), where each detected neutron deposits charge across a cluster of pixels within a very high-rate event stream (96M+ hits/sec). rustpix parses TPX3 event data in parallel using memory-mapped I/O, offers four interchangeable clustering algorithms (ABS adjacency-based search, DBSCAN, graph/union-find connected components, and a parallel grid method), and extracts weighted, super-resolved centroids to produce neutron-event lists. A streaming architecture lets it process files larger than available memory. rustpix is distributed as a pip-installable Python package (with NumPy integration), Rust crates, a command-line tool, and an interactive GUI; it writes HDF5, Apache Arrow, and CSV; and it is designed to extend to TPX4 and other detector types. Released as open-source under the MIT License.

Zhang, Chen [Oak Ridge National Laboratory (ORNL),↗

Cleaned 5-Minute Resolution Air Quality and Meteorological Data from Nine TCEQ CAMS Sites in Houston, Texas (Nov 2021 – Oct 2022)

These data encompass 5-minute air monitoring and meteorological observations collected in the greater Houston, Texas metropolitan region, at nine (9) Continuous Ambient Monitoring Stations (CAMS) operated by the Texas Commission on Environmental Quality (TCEQ) between November 1, 2021 and October 31, 2022. The CAMS sites (CAMS 1, 8, 35, 45, 148, 403, 405, 410, and 1052) were chosen because their instrumentation includes measurements of PM2.5. These sites also provide continuous multi-parameter air-quality and meteorological measurements. Particulate matter (PM2.5, PM10) was sampled along with several trace gases, including ozone (O3), nitrogen oxides (NO, NO2, NOx), sulfur dioxide (SO2), and carbon monoxide (CO). The data set also contains standard surface meteorological parameters (temperature, humidity, pressure, wind speed, and wind direction). Several sites also include AutoGC-based measurements of volatile organic compounds (VOCs). Air monitoring instruments deployed at the selected sites comprise the following systems: BAM-1020 or TEOM (PM2.5), Thermo Scientific TEI 49i (O3), TEI 42i (NOx), and AutoGCs (VOCs). This data set is similar to the data included within the houairq5mX1.00 datastream, except for a few additional quality control steps. A systematic data cleaning and verification process was performed on the data set to ensure its quality and preparation for analysis. Removal of non-numeric status flags (e.g., [LIM], [QAS], [SPZ], [CAL], [PMA], [AQI], [SPN], [MAL]) was accomplished by employing rule-based string parsing to extract valid numerical values. Missing entries were set to -9999; however, invalid or anomalous values (e.g., 99999) were retained as originally reported by the TCEQ to preserve data provenance. The time sequence was verified for completeness, removal of duplicates, and uniformity at 5-minute intervals. Column labeling was standardized, and corresponding values were assessed for physical plausibility. All timestamps in the data set were reported in Coordinated Universal Time (UTC) as provided by the TCEQ. Further, the latitude and longitude coordinates were added for each CAMS site. A subset of the data (June 1–September 30, 2022) has been used in the following publication: Subba et al. 2025. “Implications of sea breeze circulations on boundary layer aerosols in the southern coastal Texas region.” EGUsphere 2025: 1–49, https://doi.org/10.5194/egusphere-2025-2659.

latitude↗

Plant Bioengineering Atlas: A Knowledge Graph of Genes, DNA Constructs, and Plant Traits.

Plant bioengineering has generated tens of thousands of genotype-to-phenotype relationships, but this knowledge remains fragmented across narrative literature and difficult to use computationally. Inconsistent descriptions of DNA constructs, host species, and traits, including variable species names, omitted regulatory elements, and inconsistent gene symbols, impede data reuse, comparative analysis, and design-build-test-learn cycles. Here, we present the Plant Bioengineering Atlas, a literature-mined, ontology-grounded knowledge base assembled using an artificial intelligence (AI)-aided extraction pipeline. A large language model parsed open-access primary research articles to generate structured, provenance-anchored records of engineered genes, modification types, promoter-gene-terminator constructs, host species, target traits, and reported phenotypes, with every record traceable to its source. The current release contains 14,358 curated records encompassing 6,998 distinct genes across 436 plant species from 6,452 papers published between 2000 and 2026. Corpus analysis reveals that experiments are concentrated in a small group of model and crop species, disease and pathogen resistance is the most frequently engineered trait class, and constitutive regulatory parts (particularly the CaMV 35S promoter and NOS terminator) remain pervasive. Two in five records omit one or both flanking regulatory elements (i.e., promoter and terminator), while only 23.4% describe cassettes in which both elements resolve to named part classes, exposing a systematic reproducibility gap. We organize these data into a knowledge graph linking genes, constructs, species, and traits; provide access through an interactive web portal; and propose an AI-compatible documentation standard for AI-ready reporting. The Plant Bioengineering Atlas provides a foundation for data-driven hypothesis generation and AI-aided plant biodesign.

, Genes, DNA Constructs↗

Cognitive memory

Perceptive cognition system structurally analyzed with semantic techniques for parsing and compiling

Arnold, P.↗

A translator and simulator for the Burroughs D machine

The D Machine is described as a small user microprogrammable computer designed to be a versatile building block for such diverse functions as: disk file controllers, I/O controllers, and emulators. TRANSLANG is an ALGOL-like language, which allows D Machine users to write microprograms in an English-like format as opposed to creating binary bit pattern maps. The TRANSLANG translator parses TRANSLANG programs into D Machine microinstruction bit patterns which can be executed on the D Machine simulator. In addition to simulation and translation, the two programs also offer several debugging tools, such as: a full set of diagnostic error messages, register dumps, simulated memory dumps, traces on instructions and groups of instructions, and breakpoints.

Roberts, J.↗

Programmable formatting of program text: Experiences drawn from the TAMPR system

The TAMPR System originated as an approach to the problem of automating the routine modifications of FORTRAN source programs required to adapt them to a variety of uses or environments. Three steps are involved: (1) A FORTRAN source program is processed by the TAMPR Recognizer, yielding essentially a parse tree called the abstract form, (2) the Transformation Interpreter applies IGT's (Intragrammatical Transformations) to the abstract form as tree operations, and (3) the abstract form is then reconverted to source program form by the Formatter. By ensuring that the transformations are applied only to the correct syntactic entities and only in the intended contexts, the use of the abstract form greatly simplifies establishing the reliability of the overall process.

Dritz, K. W.↗

Distributed problem solving and natural language understanding models

A theory of organization and control for a meaning-based language understanding system is mapped out. In this theory, words, rather than rules, are the units of knowledge, and assume the form of procedural entities which execute as generator-like coroutines. Parsing a sentence in context demands a control environment in wich experts can ask questions of each other, forward hints and suggestions to each other, and suspend. The theory is a cognitive theory of both language representation and parser control.

Rieger, C.↗

The PASCAL-HDM Verification System

The PASCAL-HDM verification system is described. This system supports the mechanical generation of verification conditions from PASCAL programs and HDM-SPECIAL specifications using the Floyd-Hoare axiomatic method. Tools are provided to parse programs and specifications, check their static semantics, generate verification conditions from Hoare rules, and translate the verification conditions appropriately for proof using the Shostak Theorem Prover, are explained. The differences between standard PASCAL and the language handled by this system are explained. This consists mostly of restrictions to the standard language definition, the only extensions or modifications being the addition of specifications to the code and the change requiring the references to a function of no arguments to have empty parentheses.

Source record↗

The parser generator as a general purpose tool

The parser generator has proven to be an extremely useful, general purpose tool. It can be used effectively by programmers having only a knowledge of grammars and no training at all in the theory of formal parsing. Some of the application areas for which a table-driven parser can be used include interactive, query languages, menu systems, translators, and programming support tools. Each of these is illustrated by an example grammar.

Noonan, R. E.↗

An expert system for natural language processing

A solution to the natural language processing problem that uses a rule based system, written in OPS5, to replace the traditional parsing method is proposed. The advantage to using a rule based system are explored. Specifically, the extensibility of a rule based solution is discussed as well as the value of maintaining rules that function independently. Finally, the power of using semantics to supplement the syntactic analysis of a sentence is considered.

Hennessy, John F.↗

A fiber optic tactical voice/data network based on FDDI

An asynchronous high-speed fiber optic local area network is described that supports ordinary data packet traffic simultaneously with synchronous Tl voice traffic over a common FDDI token ring channel. A voice interface module was developed that parses, buffers, and resynchronizes the voice data to the packet network. The technique is general, however, and can be applied to any deterministic class of networks, including multi-tier backbones. A conventional single token access protocol was employed at the lowest layer, with fixed packet sizes for voice and variable for data. In addition, the higher layer packet data protocols are allowed to operate independently of those for the voice thereby permitting great flexibility in reconfiguring the network. Voice call setup and switching functions were performed external to the network with PABX equipment.

Bergman, L. A.↗

A natural language query system for Hubble Space Telescope proposal selection

The proposal selection process for the Hubble Space Telescope is assisted by a robust and easy to use query program (TACOS). The system parses an English subset language sentence regardless of the order of the keyword phases, allowing the user a greater flexibility than a standard command query language. Capabilities for macro and procedure definition are also integrated. The system was designed for flexibility in both use and maintenance. In addition, TACOS can be applied to any knowledge domain that can be expressed in terms of a single reaction. The system was implemented mostly in Common LISP. The TACOS design is described in detail, with particular attention given to the implementation methods of sentence processing.

Hornick, Thomas↗

An English language interface for constrained domains

The Multi-Satellite Operations Control Center (MSOCC) Jargon Interpreter (MJI) demonstrates an English language interface for a constrained domain. A constrained domain is defined as one with a small and well delineated set of actions and objects. The set of actions chosen for the MJI is from the domain of MSOCC Applications Executive (MAE) Systems Test and Operations Language (STOL) directives and contains directives for signing a cathode ray tube (CRT) on or off, calling up or clearing a display page, starting or stopping a procedure, and controlling history recording. The set of objects chosen consists of CRTs, display pages, STOL procedures, and history files. Translation from English sentences to STOL directives is done in two phases. In the first phase, an augmented transition net (ATN) parser and dictionary are used for determining grammatically correct parsings of input sentences. In the second phase, grammatically typed sentences are submitted to a forward-chaining rule-based system for interpretation and translation into equivalent MAE STOL directives. Tests of the MJI show that it is able to translate individual clearly stated sentences into the subset of directives selected for the prototype. This approach to an English language interface may be used for similarly constrained situations by modifying the MJI's dictionary and rules to reflect the change of domain.

Page, Brenda J.↗

Implementation of a tactical voice/data network over FDDI

An asynchronous high-speed fiber-optic local-area network is described that simultaneously supports packet data traffic with synchronous TI voice traffic over a standard asynchronous FDDI (fiber distributed data interface) token-ring channel. A voice interface module was developed that parses, buffers, and resynchronizes the voice data to the packet network. The technique is general, however, and can be applied to any deterministic class of networks, including multitier backbones. In addition, the higher layer packet data protocols may operate independently of those for the voice, thereby permitting great flexibility in reconfiguring the network. Voice call setup and switching functions are performed external to the network with PABX equipment.

Bergman, L. A.↗

Automating the uplink process for planetary missions

The dual challenges of increased capability along with lower costs are addressed with regard to flight operations. A program has been formulated to take advantage of advances in software and hardware in order to design, and prototype where indicated, a set of tools which can be applied to the building of a more productive uplink process for NASA missions that are envisaged for the the next decade. Techniques such as object-oriented programming, expert systems, natural-language parsing, interactive graphics, and parallel processing are employed in the quest for increased productivity. The paper is organized hierarchically with the level of 'goal', 'objectives' and 'tasks'. A brief review of the uplink process is included.

Mclaughlin, William I.↗

XTRN - Automatic Code Generator For C Header Files

Computer program XTRN, Automatic Code Generator for C Header Files, generates "extern" declarations for all globally visible identifiers contained in input C-language code. Generates external declarations by parsing input text according to syntax derived from C. Automatically provides consistent and up-to-date "extern" declarations and alleviates tedium and errors involved in manual approach. Written in C and Unix Shell.

Pieniazek, Lester A.↗

Expert networks in CLIPS

Rule-based expert systems may be structurally and functionally mapped onto a special class of neural networks called expert networks. This mapping lends itself to adaptation of connectionist learning strategies for the expert networks. A parsing algorithm to translate C Language Integrated Production System (CLIPS) rules into a network of interconnected assertion and operation nodes has been developed. The translation of CLIPS rules to an expert network and back again is illustrated. Measures of uncertainty similar to those rules in MYCIN-like systems are introduced into the CLIPS system and techniques for combining and hiring nodes in the network based on rule-firing with these certainty factors in the expert system are presented. Several learning algorithms are under study which automate the process of attaching certainty factors to rules.

Hruska, S. I.↗

Decision paths in complex tasks

Complex real world action and its prediction and control has escaped analysis by the classical methods of psychological research. The reason is that psychologists have no procedures to parse complex tasks into their constituents. Where such a division can be made, based say on expert judgment, there is no natural scale to measure the positive or negative values of the components. Even if we could assign numbers to task parts, we lack rules i.e., a theory, to combine them into a total task representation. We compare here two plausible theories for the amalgamation of the value of task components. Both of these theories require a numerical representation of motivation, for motivation is the primary variable that guides choice and action in well-learned tasks. We address this problem of motivational quantification and performance prediction by developing psychophysical scales of the desireability or aversiveness of task components based on utility scaling methods (Galanter 1990). We modify methods used originally to scale sensory magnitudes (Stevens and Galanter 1957), and that have been applied recently to the measure of task 'workload' by Gopher and Braune (1984). Our modification uses utility comparison scaling techniques which avoid the unnecessary assumptions made by Gopher and Braune. Formula for the utility of complex tasks based on the theoretical models are used to predict decision and choice of alternate paths to the same goal.

Galanter, Eugene↗