North American natural gas market and infrastructure developments under different mechanisms of renewable policy coordination
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Avraam, Charalampos↗
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Efficacy of commercial recombinant HVT vaccines against a North American clade 2.3.4.4b H5N1 highly pathogenic avian influenza virus in chickens
The outbreak of clade 2.3.4.4b H5 highly pathogenic avian influenza (HPAI) in North America that started in 2021 has increased interest in applying vaccination as a strategy to help control and prevent the disease in poultry. Two commercially available vaccines based on the recombinant herpes virus of turkeys (rHVT) vector were tested against a recent North American clade 2.3.4.4b H5 HPAI virus isolate: A/turkey/Indiana/22-003707-003/2022 H5N1 in specific pathogen free white leghorn (WL) chickens and commercial broiler chickens. One rHVT-H5 vaccine encodes a hemagglutinin (HA) gene designed by the computationally optimized broadly reactive antigen method (COBRA-HVT vaccine). The other encodes an HA gene of a clade 2.2 virus (2.2-HVT vaccine). There was 100% survival of both chicken types COBRA-HVT vaccinated groups and in the 2.2-HVT vaccinated groups there was 94.8% and 90% survival of the WL and broilers respectively. Compared to the 2.2-HVT vaccinated groups, WL in the COBRA-HVT vaccinated group shed significantly lower mean viral titers by the cloacal route and broilers shed significantly lower titers by the oropharyngeal route than broilers. Virus titers detected in oral and cloacal swabs were otherwise similar among both vaccine groups and chicken types. To assess antibody-based tests to identify birds that have been infected after vaccination (DIVA-VI), sera collected after the challenge were tested with enzyme-linked lectin assay-neuraminidase inhibition (ELLA-NI) for N1 neuraminidase antibody detection and by commercial ELISA for detection of antibodies to the NP protein. As early as 7 days post challenge (DPC) 100% of the chickens were positive by ELLA-NI. ELISA was less sensitive with a maximum of 75% positive at 10DPC in broilers vaccinated with 2.2-HVT. Both vaccines provided protection from challenge to both types of chickens and ELLA-NI was sensitive at identifying antibodies to the challenge virus therefore should be evaluated further for DIVA-VI.
60 APPLIED LIFE SCIENCES↗
Snow-corrected vegetation indices for improved gross primary productivity assessment in North American evergreen forests
North American evergreen forests cover large areas and influence the global carbon cycle. Satellite remote sensing has been used to track the phenology of ecosystem photosynthesis of these forests by detecting variation in vegetation optical properties associated with physiological and structural features, and most of these methods have been closely tied to vegetation greenness. However, in evergreens, the application of satellite data to monitor photosynthetic phenology is often limited by the lack of sensitivity of greenness-based indices. In this study, we identified 47 evergreen forest flux sites in North America that had MODIS observation overlapping with the flux tower records. We then calculated four vegetation indices using MODIS MAIAC data (MCD19A1), including NDVI, CCI, NIRv, and kNDVI, for the 47 flux sites and evaluated relationships between gross primary productivity (GPP) and vegetation indices across the North American evergreen forests. Our results showed that snow had substantial effects on the performance of all vegetation indices in tracking GPP phenology, particularly in the early spring when rapid changes occurred to both GPP and snow cover. Furthermore, different vegetation indices were affected differently, indicating contradictory and confounding effects of snow on these indices. After correcting for the snow effects, both CCI and NIRv performed well in tracking GPP phenology, albeit for different reasons. CCI is sensitive to seasonal changes in the relative levels of chlorophyll and carotenoid pigments, which are closely tied to GPP phenology in evergreens. NIRv is sensitive to the absorbed photosynthetically active radiation and to the contribution of deciduous components to the overall optical properties. We also found that correlations between GPP and vegetation indices varied among ecoregions and climate classes. In general, regions with pronounced seasonal GPP patterns had stronger correlations between GPP and greenness-based indices than regions with weaker seasonal GPP patterns. These biome differences were less pronounced for CCI. The snow artifacts and complementary vegetation index effects reported here should be considered in any large-scale studies of GPP using reflectance-based indices from optical satellites.
54 ENVIRONMENTAL SCIENCES↗
A New Coupled Biogeochemical Modeling Approach Provides Accurate Predictions of Methane and Carbon Dioxide Fluxes Across Diverse Tidal Wetlands
Abstract Tidal wetlands provide valuable ecosystem services, including storing large amounts of carbon. However, the net exchanges of carbon dioxide (CO 2 ) and methane (CH 4 ) in tidal wetlands are highly uncertain. While several biogeochemical models can operate in tidal wetlands, they have yet to be parameterized and validated against high‐frequency, ecosystem‐scale CO 2 and CH 4 flux measurements across diverse sites. We paired the Cohort Marsh Equilibrium Model (CMEM) with a version of the PEPRMT model called PEPRMT‐Tidal, which considers the effects of water table height, sulfate, and nitrate availability on CO 2 and CH 4 emissions. Using a model‐data fusion approach, we parameterized the model with three sites and validated it with two independent sites, with representation from the three marine coasts of North America. Gross primary productivity (GPP) and ecosystem respiration (R eco ) modules explained, on average, 73% of the variation in CO 2 exchange with low model error (normalized root mean square error (nRMSE) <1). The CH 4 module also explained the majority of variance in CH 4 emissions in validation sites ( R 2 = 0.54; nRMSE = 1.15). The PEPRMT‐Tidal‐CMEM model coupling is a key advance toward constraining estimates of greenhouse gas emissions across diverse North American tidal wetlands. Further analyses of model error and case studies during changing salinity conditions guide future modeling efforts regarding four main processes: (a) the influence of salinity and nitrate on GPP, (b) the influence of laterally transported dissolved inorganic C on R eco , (c) heterogeneous sulfate availability and methylotrophic methanogenesis impacts on surface CH 4 emissions, and (d) CH 4 responses to non‐periodic changes in salinity.
54 ENVIRONMENTAL SCIENCES↗
Relationship between Atmospheric Aerosol Mineral Surface Area and Iron Solubility
Size-fractionated dust aerosols (>7.2, 7.2-3, 3-1.5, 1.5-0.95, 0.95-0.49, and <0.49 mu m) originating from source regions, including the Sahara, North America, and the local marine environment, were collected shipboard in the Atlantic Ocean. Iron mineralogy, oxidation state, and solubility were examined using wet chemistry and synchrotron-based iron K-edge X-ray absorption near edge structure (XANES) spectroscopy. The soluble iron concentration showed a strong positive correlation with calculated aerosol an surface area (R 2 = 0.81). The iron XANES spectra, for all size ranges, were nearly identical for Saharan samples. Spectra from North American and local atmosphere (marine) provenances exhibited more variation between size fractions, with no obvious trends with the particle size. Saharan spectra were distinct from North American spectra, which confirms the different compositions of the two sources. Marine spectra displayed a range of both North American and Saharan spectral characteristics, likely reflecting that the marine samples are ultimately derived from these and potentially other sources. However, despite the notable variation in compositions, the surface area is the predominant factor affecting total iron solubility. Aerosol iron solubilization through acidic surface reactions would be most effective in samples with the highest surface area, which likely results in the strong positive correlation with soluble iron concentration in distilled water.
58 GEOSCIENCES↗
Local adaptation of both plant and pathogen: an arms‐race compromise in switchgrass rust
In coevolving species, parasites locally adapt to host populations as hosts locally adapt to resist parasites. Parasites often outpace host local adaptation since they have rapid life cycles, but host diversity, the strength of selection, and external environmental influence can result in complex outcomes. To better understand local adaptation in host–parasite systems, we examined locally adapted switchgrass (Panicum virgatum), and its leaf rust pathogen (Puccinia novopanici) across a latitudinal range in North America. We grew switchgrass genotypes in 10 replicated multiyear common gardens, measuring rust severity from natural infection in a ‘host reciprocal transplant’ framework for testing local adaptation. We conducted genome-wide association mapping to identify genetic loci associated with rust severity. Genetically differentiated rust populations were locally adapted to northern and southern switchgrass, despite host local adaptation to environmental conditions in the same regions. Rust resistance was polygenic, and distinct loci were associated with rust severity in the north and south. We narrowed a previously identified large-effect quantitative trait locus for rust severity to a candidate YELLOW STRIPE-LIKE gene and linked numerous other loci to defense-related genes. Overall, our results suggest that both hosts and parasites can be simultaneously locally adapted, especially when parasites impose less selection than other environmental factors.
59 BASIC BIOLOGICAL SCIENCES↗
Multiscale assessment of North American terrestrial carbon balance
Abstract. Comparisons of carbon uptake estimates from bottom-up terrestrial biosphere models (TBMs) to top-down atmospheric inversions help assess how well we understand carbon dioxide (CO2) exchange between the atmosphere and terrestrial biosphere. Previous comparisons have shown varying levels of agreement between bottom-up and top-down approaches, but they have almost exclusively focused on large, aggregated scales (e.g., global or continental), providing limited insights into reasons for the mismatches. Here we explore how consistency, defined as the spread in net ecosystem exchange (NEE) estimates within an ensemble of TBMs or inversions, varies with at finer spatial scales ranging from 1∘×1∘ to the continent of North America. We also evaluate how well consistency informs accuracy in overall NEE estimates by filtering models based on their agreement with the variability, magnitude, and seasonality in observed atmospheric CO2 drawdowns or enhancements. We find that TBMs produce more consistent estimates of NEE for most regions and at most scales relative to inversions. Filtering models using atmospheric CO2 metrics causes ensemble spread to decrease substantially for TBMs, but not for inversions. This suggests that ensemble spread is likely not a reliable measure of the uncertainty associated with the North American carbon balance at any spatial scale. Promisingly, applying atmospheric CO2 metrics leads to a set of models with converging flux estimates across TBMs and inversions. Overall, we show that multiscale assessment of the agreement between bottom-up and top-down NEE estimates, aided by regional-scale observational constraints is a promising path towards identifying fine-scale sources of uncertainty and improving both ensemble consistency and accuracy. These findings help refine our understanding of biospheric carbon balance, particularly at scales relevant for informing regional carbon-climate feedbacks.
54 ENVIRONMENTAL SCIENCES↗
An Overview of Atmospheric Features Over the Western North Atlantic Ocean and North American East Coast - Part 1: Analysis of Aerosols, Gases, and Wet Deposition Chemistry
The Western North Atlantic Ocean (WNAO) and adjoining East Coast of North America are of great importance for atmospheric research and have been extensively studied for several decades. This broad region exhibits complex meteorological features, diverse cloud types, and a wide range of conditions associated with gas and particulate species that originate from many sources regionally and from other continents. As Part 1 of a 2-part paper series, this work provides a characterization of quantities associated with atmospheric chemistry, including gases, aerosols, and wet deposition, based on satellite observations, ground-based data, model simulations, and reanalysis products. Key results include spatial and seasonal differences in composition along the North American East Coast and over the WNAO associated with varying sources of smoke and dust and meteorological drivers such as temperature, moisture, and precipitation. Spatial and seasonal variations of tropospheric carbon monoxide and ozone highlight different pathways towards accumulation of these species in the troposphere. Spatial distributions of speciated aerosol optical depth and vertical profiles of aerosol mass mixing ratios show a clear seasonal cycle highlighting the influence of both natural and anthropogenic sources in addition to the impact of intercontinental transport on their vertical profiles. Analysis of long-term climate model simulations of aerosol species and satellite observations of carbon monoxide confirm that there has been a significant decline in recent decades among anthropogenic constituents owing to regulatory activities. The results can inform current and future lines of research for the region.
Corral, Andrea↗
Long-range transported North American wildfire aerosols observed in marine boundary layer of eastern North Atlantic
Wildfire is a major source of biomass burning aerosols, which greatly impact Earth climate. Tree species in North America (NA) boreal forests can support high-intensity crown fires, resulting in elevated injection height and longer lifetime (on the order of months) of the wildfire aerosols. Given the long lifetime, the properties of aged NA wildfire aerosols are required to understand and quantify their effects on radiation and climate. Here we present comprehensive characterization of climatically relevant properties, including optical properties and cloud condensation nuclei (CCN) activities of aged NA wildfire aerosols, emitted from the record-breaking Canadian wildfires in August 2017. Despite the extreme injection height of ~12 km, some of the wildfire plumes descended into the marine boundary layer in the eastern North Atlantic over a period of ~2 weeks, owing to the dry intrusions behind mid-latitude cyclones. The aged wildfire aerosols have high single scattering albedos at 529 nm (ω 529 ; 0.92–0.95) while low absorption Ångström exponents (Å abs ) at 464 nm/648 nm (0.7–0.9). In comparison, Å abs of fresh/slightly aged ones are typically 1.4–3.5. This low Å abs 529 and low Å abs ~110 nm diameter) with thick non-absorbing coatings. The accelerated descent of the wildfire plume also led to strong increase of CCN concentration at the supersaturation levels representative of marine low clouds. The hygroscopicity parameter, κ CCN , of the aged wildfire aerosols varies from 0.2 to 0.4, substantially lower than that of background marine boundary layer aerosols. However, the high fraction of particles with large diameter (i.e., within accumulation size ranges, ~100–250 nm) compensates for the low values of κ, and as a result, the aged NA wildfire aerosols contribute more efficiently to CCN population. These results provide direct evidence that the long-range transported NA wildfires can strongly influence CCN concentration in remote marine boundary layer, therefore the radiative properties of marine low clouds. Given the expected increases of NA wildfire intensity and frequency and regular occurrence of dry intrusion following mid-latitude cyclones, the influence of NA wildfire aerosols on CCN and clouds in remote marine environment need to be further examined.
54 ENVIRONMENTAL SCIENCES↗
Uncertainty in Simulating Twentieth Century West African Precipitation Trends: The Role of Anthropogenic Aerosol Emissions
Anthropogenic aerosol emissions from North America and Europe have strong effects on the decadal variability of the West African monsoon (WAM). Anthropogenic aerosol effective radiative forcing is model dependent, but the impact of such uncertainty on the simulation of long-term WAM variability is unknown. We use an ensemble of simulations with HadGEM3-GC3.1 that span the most recent estimates in simulated anthropogenic aerosol effective radiative forcing. We show that uncertainty in anthropogenic aerosol radiative forcing leads to significant uncertainty at simulating multi-decadal trends in West African precipitation. At the large scale, larger forcing leads to a larger decrease in the interhemispheric temperature gradients, in temperature over both the North Atlantic Ocean and northern Sahara. There are also differences in dynamic changes specific to the WAM (locations of the Saharan heat low and African Easterly Jet, of the strength of the West African westerly jet, and of African Easterly Wave activity). We also assess effects on monsoon precipitation characteristics and temperature. We show that larger aerosol forcing results in a decrease of the number of rainy days and of heavy and extreme precipitation events and warm spells. However, simulated changes in onset and demise dates do not appear to be sensitive to the magnitude of aerosol forcing. Our results demonstrate the importance of reducing the uncertainty in anthropogenic aerosol forcing for understanding and predicting multi-decadal variability in the WAM.
54 ENVIRONMENTAL SCIENCES↗
Updated distribution maps of predominant Culex mosquitoes across the Americas
Abstract Background Estimates of the geographical distribution of Culex mosquitoes in the Americas have been limited to state and provincial levels in the United States and Canada and based on data from the 1980s. Since these estimates were made, there have been many more documented observations of mosquitoes and new methods have been developed for species distribution modeling. Moreover, mosquito distributions are affected by environmental conditions, which have changed since the 1980s. This calls for updated estimates of these distributions to understand the risk of emerging and re-emerging mosquito-borne diseases. Methods We used contemporary mosquito data, environmental drivers, and a machine learning ecological niche model to create updated estimates of the geographical range of seven predominant Culex species across North America and South America: Culex erraticus , Culex nigripalpus , Culex pipiens , Culex quinquefasciatus , Culex restuans , Culex salinarius , and Culex tarsalis . Results We found that Culex mosquito species differ in their geographical range. Each Culex species is sensitive to both natural and human-influenced environmental factors, especially climate and land cover type. Some prefer urban environments instead of rural ones, and some are limited to tropical or humid areas. Many are found throughout the Central Plains of the USA. Conclusions Our updated contemporary Culex distribution maps may be used to assess mosquito-borne disease risk. It is critical to understand the current geographical distributions of these important disease vectors and the key environmental predictors structuring their distributions not only to assess current risk, but also to understand how they will respond to climate change. Since the environmental predictors structuring the geographical distribution of mosquito species varied, we hypothesize that each species may have a different response to climate change. Graphical abstract
59 BASIC BIOLOGICAL SCIENCES↗
First Wave of Incentive-Driven CCS Projects in North Dakota
Conference poster presented at American Association of Petroleum Geologists (AAPG) Carbon Capture, Utilization, and Storage (CCUS) Conference, Houston, Texas, March 28–30, 2022. While the central interior of North America offers a tremendous storage resource, optimization will be key to meaningfully reducing the more than 2.6 billion tons of CO 2 emitted annually from large point sources in the United States. These initial projects tend to have the most favorable economics and are often able to take advantage of the best geology, with little to no competition for resource. This initial wave of projects is informing investment in and creating the opportunity for innovation that will enable the next wave of incentive-based CCS projects. Such innovation is critical for reducing costs, enhancing the design and operability of the next wave of CCS projects, and realizing more of the 250 billion tons of storage resource in North Dakota.
01 COAL, LIGNITE, AND PEAT↗
Cloud condensation nuclei activity of internally mixed particle populations at a remote marine free troposphere site in the North Atlantic Ocean
Here, this study reports results from research conducted at the Observatory of Mount Pico (OMP), 2225 m above mean sea level on Pico Island in the Azores archipelago in June and July 2017. We investigated the chemical composition, mixing state, and cloud condensation nuclei (CCN) activities of long-range transported free tropospheric (FT) particles. FLEXible PARTicle Lagrangian particle dispersion model (FLEXPART) simulations reveal that most air masses that arrived at the OMP during the sampling period originated in North America and were highly aged (average plume age > 10 days). We probed size-resolved chemical composition, mixing state, and hygroscopicity parameter ($\mathcal{κ}$) of individual particles using computer-controlled scanning electron microscopy with an energy-dispersive X-ray spectrometer (CCSEM-EDX). Based on the estimated individual particle mass from elemental composition, we calculated the mixing state index, $χ$. During our study, FT particle populations were internally mixed ($χ$ of samples are between 53% and 87%), owing to the long atmospheric aging time. We used data from a miniature Cloud Condensation Nucleus Counter (miniCCNC) to derive the hygroscopicity parameter, $\mathcal{κ}$ CCNC . Combining $\mathcal{κ}$ CCNC and FLEXPART, we found that air masses recirculated above the North Atlantic Ocean with lower mean altitude had higher $\mathcal{κ}$ CCNC due to the higher contribution of sea salt particles. We used CCSEM-EDX and phase state measurements to predict single-particle $\mathcal{κ}$ ($\mathcal{κ}$ CCSEM-EDX ) values, which overlap with the lower range of $\mathcal{κ}$ CCNC measured below 0.15 % SS. Therefore, CCSEM-EDX measurements can be useful in predicting the lower bound of $\mathcal{κ}$, which can be used in climate models to predict CCN activities, especially in remote locations where online CCN measurements are unavailable.
54 ENVIRONMENTAL SCIENCES↗
Acoustic and Genetic Data Can Reduce Uncertainty Regarding Populations of Migratory Tree-Roosting Bats Impacted by Wind Energy
Wind turbine-related mortality may pose a population-level threat for migratory tree-roosting bats, such as the hoary bat (Lasiurus cinereus) in North America. These species are dispersed within their range, making it impractical to estimate census populations size using traditional survey methods. Nonetheless, understanding population size and trends is essential for evaluating and mitigating risk from wind turbine mortality. Using various sampling techniques, including systematic acoustic sampling and genetic analyses, we argue that building a weight of evidence regarding bat population status and trends is possible to (1) assess the sustainability of mortality associated with wind turbines; (2) determine the level of mitigation required; and (3) evaluate the effectiveness of mitigation measures to ensure population viability for these species. Long-term, systematic data collection remains the most viable option for reducing uncertainty regarding population trends for migratory tree-roosting bats. We recommend collecting acoustic data using the statistically robust North American Bat Monitoring Program (NABat) protocols and that genetic diversity is monitored at repeated time intervals to show species trends. There are no short-term actions to resolve these population-level questions; however, we discuss opportunities for relatively short-term investments that will lead to long-term success in reducing uncertainty.
17 WIND ENERGY↗
Northern Hemisphere Winter Air Temperature Patterns and Their Associated Atmospheric and Ocean Conditions
The Northern Hemisphere (NH) has experienced winter Arctic warming and continental cooling in recent decades, but the dominant patterns in winter surface air temperature (SAT) are not well understood. Here, a self-organizing map (SOM) analysis is performed to identify the leading patterns in winter daily SAT fields from 1979 to 2018, and their associated atmospheric and ocean conditions are also examined. Three distinct winter SAT patterns with two phases of nearly opposite signs and a time scale of 7–12 days are found: one pattern exhibits concurrent SAT anomalies of the same sign over North America (NA) and northern Eurasia, while the other two patterns show SAT anomalies of opposite signs between, respectively, NA and the Bering Sea, and the Kara Sea and East Asia (EA). Winter SAT variations may arise from changes in the SOM frequencies. Specifically, the observed increasing trends of winter cold extremes over NA, central Eurasia, and EA during 1998–2013 can be understood as a result of the increasing occurrences of some specific SAT patterns. These SOMs are closely related to poleward advection of midlatitude warm air and equatorward movements of polar cold airmass. These meridional displacements of cold and warm airmasses cause concurrent anomalies over different regions not only in SAT but also in water vapor and surface downward longwave radiation. Anomalous sea surface temperatures in the tropical Pacific, midlatitude North Pacific, and North Atlantic and anomalous Arctic sea ice concentrations also concur to support and maintain the anomalous atmospheric circulation that causes the SAT anomalies.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2
Motion-activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter-out images that do not contain animals. These approaches are often limited by model transferability, as a model trained to recognize species from one location might not work as well for the same species in different locations. Furthermore, these methods often require advanced computational skills, making them inaccessible to many biologists. We used 3 million camera trap images from 18 studies in 10 states across the United States of America to train two deep neural networks, one that recognizes 58 species, the “species model,” and one that determines if an image is empty or if it contains an animal, the “empty-animal model.” Our species model and empty-animal model had accuracies of 96.8% and 97.3%, respectively. Furthermore, the models performed well on some out-of-sample datasets, as the species model had 91% accuracy on species from Canada (accuracy range 36%–91% across all out-of-sample datasets) and the empty-animal model achieved an accuracy of 91%–94% on out-of-sample datasets from different continents. Our software addresses some of the limitations of using machine learning to classify images from camera traps. By including many species from several locations, our species model is potentially applicable to many camera trap studies in North America. We also found that our empty-animal model can facilitate removal of images without animals globally. We provide the trained models in an R package (MLWIC2: Machine Learning for Wildlife Image Classification in R), which contains Shiny Applications that allow scientists with minimal programming experience to use trained models and train new models in six neural network architectures with varying depths.
59 BASIC BIOLOGICAL SCIENCES↗
Relationship between isotope ratios in precipitation and stream water across watersheds of the National Ecological Observation Network
The timescales associated with precipitation moving through watersheds reveal processes that are critical to understanding many hydrologic systems. Measurements of environmental stable water isotope ratios (δ 2 H and δ 18 O) have been used as tracers to study hydrologic timescales by examining how long it takes for incoming precipitation tracers become stream discharge, yet limited measurements both spatially and temporally have bounded macroscale evaluations so far. Here in this observation driven study across North American biomes within the National Ecological Observation Network (NEON), we examined δ 18 O and δ 2 H stable water isotope in precipitation (δP) and stream water (δQ) at 26 co-located sites. With an average 54 precipitation samples and 139 stream water samples per site collected over 2014–2022, assessment of local meteoric water lines and local stream water lines showed geographic variation across North America. Taking the ratio of estimated seasonal amplitudes of δP and δQ to calculate young water fractions (F yw ), showed a Fyw range from 1% to 93% with most sites having F yw below 20%. Calculate d mean transit times (MTT) based on a gamma convolution model showed a MTT range from 0.10 to 13.2 years, with half of the sites having MTT estimates lower than 2 years. Significant correlations were found between the F yw and watershed area, longest flow length, and the longest flow length/slope. Significant correlations were found between MTT and site latitude, longitude, slope, clay fraction, temperature, precipitation magnitude, and precipitation frequency. The significant correlations between water timescale metrics and the environmental characteristics we report share some similarities with those reported in prior studies, demonstrating that these quantities are primarily driven by site or area specific factors. The analysis of isotope data presented here provides important constraints on isotope variation in North American biomes and the timescales of water movement through NEON study sites.
54 ENVIRONMENTAL SCIENCES↗
Virulence and Genetic Diversity of Puccinia spp., Causal Agents of Rust on Switchgrass (Panicum virgatum L.) in the USA
Switchgrass (Panicum virgatum L.) is an important cellulosic biofuel grass native to North America. Rust, caused by Puccinia spp. is the most predominant disease of switchgrass and has the potential to impact biomass conversion. In this study, virulence patterns were determined on a set of 38 switchgrass genotypes for 14 single-spore rust isolates from 14 field samples collected in seven states. Single nucleotide polymorphism (SNP) variation was also assessed in 720 sequenced cloned amplicons representing 654 base pairs of the elongation factor 1-α gene from the field samples. Five major haplotypes were identified differing by 11 out of the 39 SNP positions identified. STRUCTURE, Principal Coordinate Analysis, and phylogenetic analyses divided the rust population into two genetic clusters. Virginia and Georgia had the highest and lowest rust genetic diversity, respectively. Only nine accessions showed a differential disease response between the 14 isolates, allowing the identification of eight races, differing by 1–3 virulence factors. Overall, the results suggested clonal reproduction of the pathogen and a North–South differentiation via local adaptation. However, similar haplotypes and races were also recovered from several states, suggesting migration events, and highlighting the need to further investigate the switchgrass rust population structure and evolution in the USA.
Bahri, Bochra A. (ORCID:0000000159055880)↗