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At least 199 records · Page 11

A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B

Chronic hepatitis B virus (HBV) infection is strongly associated with increased risk of liver cancer and cirrhosis. While existing treatments effectively inhibit the HBV life cycle, viral rebound frequently occurs following treatment interruption. Consequently, functional cure rates of chronic HBV infection remain low and there is increased interest in a novel treatment modality, capsid assembly modulators (CAMs). Here, we develop a multiscale mathematical model of CAM treatment in chronic HBV infection. By fitting the model to participant data from a phase I trial of the first-generation CAM vebicorvir, we estimate the drug’s dose-dependent effectiveness and identify the physiological mechanisms that drive the observed biphasic decline in HBV DNA and RNA, and mechanistic differences between HBeAg-positive and negative infection. Finally, we demonstrate analytically and numerically that the relative change of HBV RNA more accurately reflects the antiviral effectiveness of a CAM than the relative change in HBV DNA.

59 BASIC BIOLOGICAL SCIENCES↗

The two radiative states of the Arctic atmosphere and their impacts on the surface energy budget of sea ice

The surface energy budget (SEB) is a central regulator of Arctic climate and sea ice evolution, yet its processes remain poorly constrained due to sparse observations and complex, coupled surface-atmosphere interactions. This study leverages year-long measurements from the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) to provide the most comprehensive assessment to date of the central Arctic SEB and its modulation by atmospheric variability. Ship- and ice-based observations from October 2019 to September 2020 were used to directly measure or tightly constrain each term of the SEB, leading to exceptional energetic closure with the seasonal snow and ice mass balance. The analysis reveals strong seasonal transitions in atmosphere-surface energy transfer that are modulated by the atmospheric state and constrained by the ability of the surface temperature to respond. Classification of the atmosphere into its two dominant radiative states—the semi-transparent (ST) and opaque (OP)—highlights the central role of synoptic-scale variability in clouds. The ST atmospheric state dominated the long winter ice growth season, with limited cloudiness supporting persistent surface radiative cooling and ice growth. The OP state, associated with liquid-containing or thick ice clouds, became dominant in spring, with the combination of increased solar heating and cloud surface longwave warming driving ice and snow melt. Eddy covariance versus bulk approaches for deriving surface turbulent heat fluxes provide vastly different perspectives on the role of turbulence in modulating the SEB. These results establish a high-quality benchmark dataset for Arctic SEB studies and demonstrate how the balance of atmospheric radiative states exerts a first-order control on the annual evolution of the sea ice. The findings have broad implications for advancing observing technologies, understanding Arctic amplification, improving climate models, and predicting future sea ice change.

54 ENVIRONMENTAL SCIENCES↗

Data from TropiRoot 1.0 database: tropical root characteristics across environments

TropiRoot 1.0 is a new tropical root database with root characteristics across environment gradients. It has data extracted from 104 new sources, resulting in more than 8000 rows of data (either species or community data). Most of the data in TropiRoot 1.0 includes root characteristics such as root biomass, morphology, root dynamics, mass fraction, architecture, anatomy, physiology and root chemistry. This initiative represents an approximately 30% increase in the currently available data for tropical roots in the Fine Root Ecology Database (FRED). TropiRoot 1.0, contains root characteristics from 25 different countries where seven are located in Asia, six in South America, five in Central America and the Caribbean, four in Africa, two in North America, and 1 in Oceania. Due to the volume of data, when ancillary data was available, including soil data, these data was either extracted and included in the database or their availability was recorded in an additional column. Multiple contributors checked the entries for outliers during the collation process to ensure data quality. For text-based observations, we examined all cells to ensure that their content relates to their specific categories. For numerical observations, we ordered each numerical value from least to greatest and plotted the values, checking apparent outliers against the data in their respective sources and correcting or removing incorrect or impossible values. Some data (soil and aboveground) have different columns for the same variable presented in different units, including originally published units, but root characteristics data had units converted to match the ones reported in FRED. By filling a gap from global databases, TropiRoot 1.0 expands our knowledge of otherwise so far underrepresented regions, and our ability to assess global trends. This advancement can be used to improve tropical forest representation in vegetation models.

54 ENVIRONMENTAL SCIENCES↗

Oak Ridge National Laboratory Roane and Anderson Counties, Tennessee Historic Architectural Resource Survey June 2018

From February through September 2017, Cultural Resource Analysts, Inc. personnel completed a historic architectural resource survey of the Oak Ridge National Laboratory in Roane and Anderson Counties, Tennessee. The survey was completed at the request of UT-Battelle, LLC, the private not-for-profit company that manages and operates Oak Ridge National Laboratory for the U.S. Department of Energy. The purpose of the survey was to assist the Department of Energy in complying with the National Historic Preservation Act of 1966, as amended, by providing updated recommendations regarding the National Register of Historic Places eligibility of historic architectural resources at Oak Ridge National Laboratory. The survey included the entirety of Oak Ridge National Laboratory’s main campus that occupies approximately 1,100 acres in Bethel and Melton Valleys and on Chestnut Ridge. Based on Facilities Information Management System data and guidance provided by UT-Battelle, LLC, preservation and modernization staff, the survey team developed a list of resources for inclusion in the survey. The list included all substantial buildings constructed in or before 1980 in order to provide sufficient coverage of buildings that will turn 50 years of age within the next decade. Only those buildings with recorded area over 100 sq ft were included in the survey. Additionally, the UT-Battelle team identified 15 buildings for more intensive survey because such buildings are central to Oak Ridge National Laboratory’s future mission needs and are expected to undergo renovations in the foreseeable future. These building were subject to both exterior and interior documentation with particular focus on identifying character-defining features, and thus were subject to more detailed analysis than the other resources included in the survey. The findings of this historic resource survey build on the conclusions of the 1994 survey by DuVall & Associates, Inc., as well as the survey updates completed by Thomason and Associates in 2004 and 2015 in support of the Oak Ridge National Laboratory Historic Preservation Plan. Within 12 distinct areas of Oak Ridge National Laboratory, as well as outlying areas, the survey recorded 195 buildings and structures constructed in or before 1980. In consideration of the role and significance of each area and each individual resource within the context of Oak Ridge National Laboratory, and in light of their current integrity and condition, each recorded resource was evaluated to determine if it is eligible for listing in the National Register of Historic Places.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

The Hunga Volcanic Eruption Atmospheric Impacts Report

On 15 January 2022 a highly explosive eruption of the Hunga volcano occurred in the Kingdom of Tonga in the South Pacific Ocean (175°24’ W, 20°33’ S). The Volcanic Explosivity Index (VEI) 6 eruption originated from a shallow submarine vent, making it distinct from large subaerial eruptions of recent decades (e.g., 1982 El Chichón, 1991 Mt. Pinatubo). In particular, seawater enhanced explosivity and dampened sulfur dioxide (SO 2 ) emissions. The eruption was the culmination of ~1 month of precursory activity; however, the timing and size of the eruption were unexpected, partly due to the challenges of monitoring submarine volcanoes. The stratospheric hydration caused by the eruption was unprecedented in magnitude, altitude, and duration in the satellite record. This Executive Summary reflects the current assessment of the Hunga eruption and its impact on the climate system. We report key observations of the eruption and its aftermath, as well as simulations of its impact by global chemistry-climate models. The Hunga eruption had an unprecedented impact on the stratosphere and mesosphere due to the plume height and large water content, which increased the global stratospheric water vapour burden by 10%. Most of this water has remained in the atmosphere into 2025. However, Hunga’s net impact on surface climate was small compared to that of earlier large-magnitude volcanic eruptions, due to limited sulfate aerosol loading in the stratosphere and the high altitude of the water vapour injection.

58 GEOSCIENCES↗

Micro2Macro: Origins of Climate Change Uncertainty

Where we are: Global Earth system models (ESMs) are essential tools for seasonal-to decadal environmental predictions, which decision-makers across government and industry require. However, uncertainties originating at the microphysical scale, i.e., in processes occurring on scales smaller than typical ESM grid boxes, remain a major challenge. While resolution continues to improve in our predictive models, we will need to parameterize microphysical processes that contribute the bulk of prediction uncertainty for the foreseeable future. Microphysical uncertainties contribute broadly to remaining limitations on Earth system predictability on seasonal and decadal time scales.

54 ENVIRONMENTAL SCIENCES↗

EcoVillage: A Net Zero Energy Ready Community - Ithaca Crawlspace

The U.S. Department of Energy's (DOE) Building America team, Consortium for Residential Buildings (CARB), is working with the EcoVillage cohousing community in Ithaca, New York, on the Third Residential EcoVillage Experience neighborhood. This community-scale project consists of 40 housing units-15 apartments and 25 single-family residences. Units range in size from 450 ft2 to 1,664 ft2 and cost from $80,000 for a studio apartment to $235,000 for a three- or four-bedroom single-family home. The community is pursuing certifications for DOE Zero Energy Ready Home, U.S. Green Building Council Leadership in Energy and Environmental Design Gold, and ENERGY STAR for the entire project. Additionally, seven of the 25 homes, along with the four-story apartment building and community center, are being constructed to the Passive House (PH) design standard.

Array↗

Genome-Wide Association Study for Identifying Loci that Affect Fillet Yield, Carcass, and Body Weight Traits in Rainbow Trout (Oncorhynchus mykiss)

Fillet yield (FY, %) is an economically-important trait in rainbow trout aquaculture that affects production efficiency. Despite that, FY has received little attention in breeding programs because it is difficult to measure on a large number of fish and cannot be directly measured on breeding candidates. The recent development of a high-density SNP array for rainbow trout has provided the needed tool for studying the underlying genetic architecture of this trait. A genome-wide association study (GWAS) was conducted for FY, body weight at 10 (BW10) and 13 (BW13) months post-hatching, head-off carcass weight (CAR), and fillet weight (FW) in a pedigreed rainbow trout population selectively bred for improved growth performance. The GWAS analysis was performed using the weighted single-step GBLUP method (wssGWAS). Phenotypic records of 1447 fish (1.5 kg at harvest) from 299 full-sib families in three successive generations, of which 875 fish from 196 full-sib families were genotyped, were used in the GWAS analysis. A total of 38,107 polymorphic SNPs were analyzed in a univariate model with hatch year and harvest group as fixed effects, harvest weight as a continuous covariate, and animal and common environment as random effects. A new linkage map was developed to create windows of 20 adjacent SNPs for use in the GWAS. The two windows with largest effect for FY and FW were located on chromosome Omy9 and explained only 1.0–1.5% of genetic variance, thus suggesting a polygenic architecture affected by multiple loci with small effects in this population. One window on Omy5 explained 1.4 and 1.0% of the genetic variance for BW10 and BW13, respectively. Three windows located on Omy27, Omy17, and Omy9 (same window detected for FY) explained 1.7, 1.7, and 1.0%, respectively, of genetic variance for CAR. Among the detected 100 SNPs, 55% were located directly in genes (intron and exons). Nucleotide sequences of intragenic SNPs were blasted to the Mus musculus genome to create a putative gene network. The network suggests that differences in the ability to maintain a proliferative and renewable population of myogenic precursor cells may affect variation in growth and fillet yield in rainbow trout.

54 ENVIRONMENTAL SCIENCES↗

Stability of Polyethylene Glycol-Coated Copper Nanoparticles and Their Optical Properties

Oxidation is a corrosion reaction where the corroded metal forms an oxide. Prevention of oxidation at the nanoscale is critically important to retain the physicochemical properties of metal nanoparticles. In this work, we studied the stability of polyethylene glycol (PEG) coated copper nanoparticles (PEGylated CuNPs) against oxidation. The freshly-prepared PEGylated CuNPs mainly consist of metallic Cu which are quite stable in air although their surfaces are typically covered with a few monolayers of cuprous oxide. However, they are quickly oxidized in water due to the presence of protons that facilitate oxidation of the cuprous oxide to cupric oxide. PEG with carboxylic acid terminus could slightly delay the oxidation process compared to that with thiol terminus. It was found that a solvent with reducing power such as ethanol could greatly enhance the stability of PEGylated CuNPs by preventing further oxidation of the cuprous oxide to cupric oxide and thus retain the optical properties of CuNPs. The reducing environment also assists the galvanic replacement of these PEGylated CuNPs to form hollow nanoshells; however, they consist of ultra-small particle assemblies due to the co-reduction of gold precursor during the replacement reaction. As a result, these nanoshells do not exhibit strong optical properties in the near-infrared region. This study highlights the importance of solvent effects on PEGylated nonprecious metal nanoparticles against oxidation corrosion and its applications in preserving physicochemical properties of metallic nanostructures.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

exoALMA. XI. ALMA Observations and Hydrodynamic Models of LkCa 15: Implications for Planetary Mass Companions in the Dust Continuum Cavity

In the past decade, the Atacama Large Millimeter/submillimeter Array (ALMA) has revealed a plethora of substructures in the disks surrounding young stars. These substructures have several proposed formation mechanisms, with one leading theory being the interaction between the disk and newly formed planets. In this Letter, we present high angular resolution ALMA observations of LkCa 15’s disk that reveal a striking difference in dust and CO emission morphology. The dust continuum emission shows a ringlike structure characterized by a dust-depleted inner region of ~40 au in radius. Conversely, the CO emission is radially smoother and shows no sign of gas depletion within the dust cavity. We compare the observations with models for the disk–planet interaction, including radiative transfer calculation in the dust and CO emission. This source is particularly interesting, as the presence of massive planets within the dust cavity has been suggested based on previous near-IR observations. We find that the level of CO emission observed within the dust cavity is inconsistent with the presence of planets more massive than Jupiter orbiting between 10 and 40 au. Instead, we argue that the LkCa 15 innermost dust cavity might be created either by a chain of low-mass planets or by other processes that do not require the presence of planets.

79 ASTRONOMY AND ASTROPHYSICS↗

The Kangaroo’s First Hop: The Early Fast Cooling Phase of EP250108a/SN 2025kg

Fast X-ray transients are a rare and poorly understood population of events. Previously difficult to detect in real time, the launch of the Einstein Probe with its Wide-field X-ray Telescope has led to a rapid expansionof the sample and allowed the exploration of these transients across the electromagnetic spectrum. EP250108a is a recently detected example linked to an optical counterpart, SN 2025kg, or “the kangaroo.” Together with a companion Letter we present our observing campaign and analysis of this event. In this letter, we focus on the early evolution of the optical counterpart over the first 6 days, including our measurement of the redshift of z = 0.17641. We compare to other supernovae and fast transients showing similar features, finding significant similarities with SN 2006aj and SN 2020bvc, and show that the source is well modelled by a rapidly expanding cooling blackbody. We show the observed X-ray and radio properties are consistent with a collapsar-powered jet that is low energy (≲10 51 erg) and/or fails to break out of the dense material surrounding it. While we examine the possibility that the optical emission emerges from the shock produced as the supernova ejecta expand into a dense shell of circumstellar material, due to our X-ray and radio inferences, we favour a model where it arises from a shocked cocoon resulting from a trapped jet. This makes SN 2025 one of the few examples of this currently observationally rare event.

79 ASTRONOMY AND ASTROPHYSICS↗

High sensitivity of simulated fog properties to parameterized aerosol activation in case studies from ParisFog

Aerosols influence fog properties such as visibility and lifetime by affecting fog droplet number concentrations (N d ). Numerical weather prediction (NWP) models often represent aerosol–fog interactions using highly simplified approaches. Incorporating prognostic size-resolved aerosol microphysics from climate models could allow them to simulate N d and aerosol–fog interactions without incurring excessive computational expense. However, microphysics code designed for coarse spatial resolution may struggle with sub-kilometer-scale grid spacings. Here, we test the ability of the UK Met Office Unified Model to simulate aerosol and fog properties during case studies from the ParisFog field campaign in 2011. We examine the sensitivity of fog properties to variations in N d caused by modifications to simulated aerosol activation. Our model, with a 500 m horizontal resolution and interactive aerosol and cloud microphysics, significantly underpredicts N d , although it only slightly underestimates the cloud condensation nuclei concentration. With an updated version of the Abdul-Razzak and Ghan (2000) activation scheme, we produce N d that are more consistent with those predicted by a cloud parcel model under fog-like conditions. We activate droplets only by adiabatic cooling. We incorporate more realistic hygroscopicities for sulfate and organic aerosols and explore the sensitivity of simulated N d to unresolved updrafts. We find that both N d and simulated fog liquid water content are very sensitive to the updated activation scheme but remain less affected by the update to hygroscopicities. Our improvements offer insights into the physical processes regulating N d in stable conditions, potentially laying foundations for improved operational fog forecasts that incorporate interactive aerosol simulations or aerosol climatologies.

Ghosh, Pratapaditya [Carnegie Mellon University, P↗

Adiabatic and radiative cooling are both important causes of aerosol activation in simulated fog events in Europe

Aerosol–fog interactions affect the visibility in, and life cycle of, fog and are difficult to represent in weather and climate models. Here we explore processes that impact the simulation of fog droplet number concentrations (N d ) at sub-kilometer scale horizontal grid resolutions in the UK Met Office Unified Model. We modify the parameterization of aerosol activation to include droplet activation by radiative cooling in addition to adiabatic cooling and determine the relative importance of the two cooling mechanisms. We further test the sensitivity of simulated N d to: (a) interception of droplets by trees and buildings, (b) overestimation of updrafts in temperature inversions (which leads to artificially high N d values), and (c) potential mechanisms for droplet deactivation due to downward fluctuations in supersaturation. We evaluate our model against observations from the ParisFog and LANFEX field campaigns, building on evaluation described in the companion paper. Including radiative cooling in the activation mechanism improves how accurately we represent the liquid water path and the vertical structure of the fog in our LANFEX case study. However, with radiative cooling, the N d are overestimated for most of the ParisFog cases and for the LANFEX case. The time-averaged overestimate exceeds a factor of three (the normalized mean bias factor exceeds 2.0) in 4 out of 11 ParisFog cases. Our sensitivity studies demonstrate how these overestimates can be mitigated. Assuming the overestimate affects both radiative and adiabatic cooling, we find that although radiative cooling is more often the dominant source, both cooling sources can sometimes dominate activation.

Ghosh, Pratapaditya [Carnegie Mellon University, P↗

Evaluation of UKESM aerosol size and composition using ATom measurements indicates missing marine aerosol formation mechanisms

Atmospheric aerosols influence climate through their interactions with radiation and clouds, yet large uncertainties remain in their simulation by global models. This study evaluates the United Kingdom Earth System Model version 1.1 (UKESM1.1) using global-scale aircraft observations from the Atmospheric Tomography (ATom) mission, focusing on aerosol lifecycle processes in the remote marine atmosphere. We assess model performance in simulating aerosol precursor vapours, number size distributions, chemical composition, and environmental conditions. Several process improvements are tested, including sulfuric acid-ammonia nucleation, ammonium nitrate scheme, methanesulfonic acid condensation, and low-temperature isoprene-derived secondary organic aerosol formation. Model biases differ significantly between the upper troposphere (UT) and the marine boundary layer (MBL). In the UT, UKESM1.1 overestimates nucleation and Aitken mode particles while underestimating accumulation mode, indicating insufficient growth. In the MBL, the model overestimates primary aerosols (e.g. seasalt) and precursor gases but underestimates nucleation and Aitken mode particles, even after incorporating updated nucleation and ammonium nitrate scheme. The persistence of low aerosol number concentrations, despite overestimated precursors, suggests missing formation pathways likely involving other species such as iodine, amines, and organic vapours. These limitations result in an unbalanced cloud condensation nuclei budget that over-relies on primary emissions. Sensitivity tests reveal that model outputs are strongly influenced by dimethyl sulfide emissions and vapour condensation schemes. Our results highlight the need for future model development to prioritise mechanistic representation of currently missing aerosol sources, rather than relying on empirical tuning, to improve aerosol-climate interaction estimates.

He, Xu-Cheng [Univ. of Cambridge (United Kingdom);↗

Emerging low-cloud feedback and adjustment in global satellite observations

From mid-2003 to mid-2024, a global decrease in low-cloud amount enhanced the absorption of solar radiation by 0.22±0.07 W m −2 per decade (±1σ range), accelerating the energy imbalance trend during that period (0.44 W m −2 per decade). Through controlling factor analysis, here we show that the low-cloud trend is due to a combination of cloud feedback and adjustments to greenhouse gases and aerosols (respectively 0.09±0.02, 0.05±0.03, and 0.03±0.03 W m −2 per decade), which jointly account for 74 % of the trend. The contribution of natural climate variability is weak but uncertain (0.01±0.08 W m −2 per decade), owing to a poorly constrained trend in boundary-layer inversion strength. Importantly, the observed low-cloud radiative trend lies well within the range of values simulated by contemporary global climate models under conditions close to present day. Any systematic model error in the representation of present-day global energy imbalance trends is thus likely to originate in processes unrelated to low clouds.

Geosciences↗

Multi-model analysis of the impact of water vapor on the radiative forcing of volcanic aerosols after the 2022 Hunga Eruption

On 15 January 2022, the Hunga volcano eruption released unprecedented amounts of water vapor into the atmosphere alongside a modest amount of SO 2 . In this work we analyse results from multiple Earth system models as part of the Hunga Tonga-Hunga Ha'apai Volcano Impact Model Observation Comparison Project. Our results show a good model agreement over the climatic outcomes of the eruption, overall indicating a significant negative radiative forcing from the Hunga eruption. The multi-model mean of global instantaneous radiative forcing averaged over 2022–2023 is estimated at −0.19 ± 0.06 W m −2 at the top-of-atmosphere (TOA), and −0.16 ± 0.06 W m −2 at the surface. Simulations with free-running meteorology and climatological sea surface temperatures and sea ice yield a global mean TOA forcing of −0.14 ± 0.10 W m −2 across two models for the first 2 years, decreasing to −0.09 ± 0.10 W m −2 on average between 2022 and 2027. However, these global values may be underestimated by about 50 %, considering that recent SO 2 injection retrievals suggest nearly twice the amount than the 0.5 Tg-SO 2 used in the protocol. We also find that the contribution from added stratospheric water vapor is minimal and that the injected SO 2 and the resulting formation of stratospheric sulfate dominate the radiative forcing. However, water vapor played a key role in the initial aerosol growth, leading to a stronger negative radiative forcing during the first 6 months after the eruption compared to simulations without water vapor co-injection.

Geosciences↗

Assessing modifications to the Abdul-Razzak and Ghan aerosol activation parameterization (version ARG2000) to improve simulated aerosol–cloud radiative effects in the UK Met Office Unified Model (UM version 13.0)

The representation of aerosol activation is a key source of uncertainty in global composition-climate model simulations of aerosol–cloud interactions. The Abdul-Razzak and Ghan (ARG) activation parameterization is used in several global and regional models that employ modal aerosol microphysics schemes. In this study, we investigate the ability of the ARG parameterization to reproduce simulations with a cloud parcel model and find its performance is sensitive to the geometric standard deviations (widths) of the lognormal aerosol modes. We recommend adjustments to three constant parameters in the ARG equations, which improve the performance of the parameterization for small mode widths and its ability to simulate activation in polluted conditions. For the accumulation mode width of 1.4 used in the Met Office Unified Model (UM), the modifications decrease the mean bias in the activated fraction of aerosols compared to a cloud parcel model from −6.6 % to +1.2 %. We implemented the improvements in the UM and compared simulated global cloud droplet concentrations with satellite observations. The simulated cloud radiative effect changes by −1.43 W m −2 (6 %) and aerosol indirect radiative forcing over the industrial period changes by −0.10 W m −2 (10 %).

Ghosh, Pratapaditya [Carnegie Mellon University, P↗