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At least 199 records · Page 11

A Comprehensive Assessment of Biologicals Contained Within Commercial Airliner Cabin Air

Both culture-based and culture-independent, biomarker-targeted microbial enumeration and identification technologies were employed to estimate total microbial and viral burden and diversity within the cabin air of commercial airliners. Samples from each of twenty flights spanning three commercial carriers were collected via air-impingement. When the total viable microbial population was estimated by assaying relative concentrations of the universal energy carrier ATP, values ranged from below detection limits (BDL) to 4.1 x 106 cells/cubic m of air. The total viable microbial population was extremely low in both of Airline A (approximately 10% samples) and C (approximately 18% samples) compared to the samples collected aboard flights on Airline A and B (approximately 70% samples). When samples were collected as a function of time over the course of flights, a gradual accumulation of microbes was observed from the time of passenger boarding through mid-flight, followed by a sharp decline in microbial abundance and viability from the initiation of descent through landing. It is concluded in this study that only 10% of the viable microbes of the cabin air were cultivable and suggested a need to employ state-of-the art molecular assay that measures both cultivable and viable-but-non-cultivable microbes. Among the cultivable bacteria, colonies of Acinetobacter sp. were by far the most profuse in Phase I, and Gram-positive bacteria of the genera Staphylococcus and Bacillus were the most abundant during Phase II. The isolation of the human pathogens Acinetobacter johnsonii, A. calcoaceticus, Janibacter melonis, Microbacterium trichotecenolyticum, Massilia timonae, Staphylococcus saprophyticus, Corynebacterium lipophiloflavum is concerning, as these bacteria can cause meningitis, septicemia, and a handful of sometimes fatal diseases and infections. Molecular microbial community analyses exhibited presence of the alpha-, beta-, gamma-, and delta- proteobacteria, as well as Gram-positive bacteria, Fusobacteria, Cyanobacteria, Deinococci, Bacterioidetes, Spirochetes, and Planctomyces in varying abundance. Neisseria meningitidis rDNA sequences were retrieved in great abundance from Airline A followed by Streptococcus oralis/mitis sequences. Pseudomonas synxantha sequences dominated Airline B clone libraries, followed by those of N. meningitidis and S. oralis/mitis. In Phase II, Airline C, sequences representative of more than 113 species, enveloping 12 classes of bacteria, were retrieved. Proteobacterial sequences were retrieved in greatest frequency (58% of all clone sequences), followed in short order by those stemming from Gram-positives bacteria (31% of all clone sequences). As for overall phylogenetic breadth, Gram-positive and alpha-proteobacteria seem to have a higher affinity for international flights, whereas beta-and gamma-proteobacteria are far more common about domestic cabin air parcels in Airline C samples. Ultimately, the majority of microbial species circulating throughout the cabin airs of commercial airliners are commensal, infrequently pathogenic normal flora of the human nasopharynx and respiratory system. Many of these microbes likely originate from the oral and nasal cavities, and lungs of passengers and flight crew and are disseminated unknowingly via routine conversation, coughing, sneezing, and stochastic passing of fomites. The data documented in this study will be useful to generate a baseline microbial population database and can be utilized to develop biosensor instrumentation for monitoring microbial quality of cabin or urban air.

microbial diversity↗

Earth Global Reference Atmospheric Model (GRAM99): Short Course

Earth-GRAM is a FORTRAN software package that can run on a variety of platforms including PC's. For any time and location in the Earth's atmosphere, Earth-GRAM provides values of atmospheric quantities such as temperature, pressure, density, winds, constituents, etc.. Dispersions (perturbations) of these parameters are also provided and have realistic correlations, means, and variances - useful for Monte Carlo analysis. Earth-GRAM is driven by observations including a tropospheric database available from the National Climatic Data Center. Although Earth-GRAM can be run in a "stand-alone" mode, many users incorporate it into their trajectory codes. The source code is distributed free-of-charge to eligible recipients.

Leslie, Fred W.↗

Catalyst comprising Ir or Ir and Ru for hydrazine decomposition

A catalyst for hydrazine decomposition consisting essentially of a carrier having a pore volume of at least 0.1 cubic centimeters per gram and a specific surface area, measured in square meters per gram, equal to 195 (C.sub.p + 0.013 + 0.736 V.sub.p) where C.sub.p is the specific heat capacity of the carrier at about 25.degree. C in calories per gram per degree and V.sub.p is the pore volume of the carrier in cubic centimeters per gram and metal of the group consisting of iridium, and mixtures consisting of iridium and ruthenium deposited on said carrier in an amount between 20% and about 40% by weight of the catalyst and distributed through the pores thereof in discrete particles sufficiently separated from each other so that they do not sinter or fuse together when the catalyst is at hydrazine decomposition temperature.

Armstrong, Warren E.↗

Why Haven't Mars Rovers Landed Where They Were Expected to?

In a recent study (Desai, 2008) of the actual landing sites for the Mars Pathfinder, Mars Exploration Rovers and the Phoenix Mars Lander, data collected indicates that these missions landed at least 13 km downrange of their targeted landing sites. A direct reason is that density measurements taken during entry, descent and landing were consistently found to be lower than those predicted by Mars atmospheric models. The basis of this study is to further investigate this problem to see if certain aspects of current Mars atmospheric models need to be reevaluated. This study compared four different atmospheric profiles at nine pairs of comparable sites around Mars. The comparable sites are similar in location and Local True Solar Time; however they are from different Mars years. One year had normal conditions, while the other year experienced a global dust storm. Three of the atmospheric profiles were obtained by the Mars Global Surveyor (MGS); these data sets include a Radio Science profile and Thermal Emission Spectrometer data in limb and nadir projections. The three MGS data sets were selected from large observational databases to allow the sites to have data observed at nearcoincident times. The last atmospheric profile is from the Mars Global Reference Atmospheric Model (Mars-GRAM), an engineering level atmospheric model widely used for mission applications. Through careful data evaluation, several conclusions were drawn. Ratios among the data show that the three observed MGS profiles were consistent with each other, although they were recorded by three different methods. Mars-GRAM data had larger differences from the observed data. Mars-GRAM particularly had issues with consistently overestimating upper atmosphere atmospheric density, as noted in Desai s study. Differences between the observed atmospheric density profiles from the Mars-GRAM atmospheric density profile could be attributed to a temperature bias in the model, especially in the upper atmosphere.

Badger, Andrew M.↗

Resurfacing promotes antibacterial activity of a lipid A–binding nanobody

Nanobodies have been pursued as candidates for antimicrobial design due to their small size and versatile binding capacities, but direct antibacterial activity of a nanobody has yet to be described. Here, we employed a bacterial surface display platform to screen a synthetic library of nanobody variants for antimicrobial potential. We identified a candidate that binds the essential lipid A component of gram-negative lipopolysaccharide. Nonetheless, this nanobody required a weakened outer membrane to access its target and elicit its toxic activity. Borrowing from observations of innate immune proteins, we found that resurfacing nanobodies with positively charged residues enabled them to bind and perturb the gram-negative outer membrane, but this alone was not sufficient for toxic activity. However, when we resurface our lipid A-targeting nanobody, it gained the ability to disrupt the outer membrane and enact its antibacterial function against wild-type bacteria. This development of a dual-function nanobody that can reach and bind previously inaccessible gram-negative targets introduces a route for antimicrobial biologic advancement.

antibacterial↗

Structural analysis of extracellular ATP-independent chaperones of streptococcal species and protein substrate interactions

ABSTRACT During infection, bacterial pathogens rely on secreted virulence factors to manipulate the host cell. However, in gram-positive bacteria, the molecular mechanisms underlying the folding and activity of these virulence factors after membrane translocation are not clear. Here, we solved the protein structures of two secreted parvulin and two secreted cyclophilin-like peptidyl-prolyl isomerase (PPIase) ATP-independent chaperones found in gram-positive streptococcal species. The extracellular parvulin-type PPIase, PrsA inStreptococcus pneumoniaeandStreptococcus mutansmaintain dimeric crystal structures reminiscent of folding catalysts that consist of two domains, a PPIase and foldase domain. Structural comparison of the two cyclophilin-like extracellular chaperones fromS. pneumoniaeandStreptococcus pyogeneswith other cyclophilins demonstrates that this group of cyclophilin-like chaperones has novel structural appendages formed by 9- and 24-residue insertions. Furthermore, we demonstrate that deletion ofprsAandslrAgenes impairs the secretion of the cholesterol-dependent pore-forming toxin, pneumolysin inS. pneumoniae. Using protein pull-down and biophysical assays, we demonstrate a direct interaction between PrsA and SlrA with Ply. Then, we developed chaperone-assisted folding assays that show that theS. pneumoniaePrsA and SlrA extracellular chaperones accelerate pneumolysin folding. In addition, we demonstrate that SlrA and, for the first time,S. pyogenes PpiA exhibit PPIase activity and can bind the immunosuppressive drug, cyclosporine A. Altogether, these findings suggest a mechanistic role for streptococcal PPIase chaperones in the activity and folding of secreted virulence factors such as pneumolysin. IMPORTANCE Streptococcal species are a leading cause of lower respiratory infections that annually affect millions of people worldwide. During infection, streptococcal species secrete a medley of virulence factors that allow the bacteria to colonize and translocate to deeper tissues. In many gram-positive bacteria, virulence factors are secreted from the cytosol across the bacterial membrane in an unfolded state. The bacterial membrane-cell wall interface is exposed to the potentially harsh extracellular environment, making it difficult for native virulence factors to fold before being released into the host. ATP-independent PPIase-type chaperones, PrsA and SlrA, are thought to facilitate folding and stabilization of several unfolded proteins to promote the colonization and spread of streptococci. Here, we present crystal structures of the molecular chaperones of PrsA and SlrA homologs from streptococcal species. We provide evidence that theStreptococcus pyogenesSlrA homolog, PpiA, has PPIase activity and binds to cyclosporine A. In addition, we show thatStreptococcus pneumoniaePrsA and SlrA directly interact and fold the cholesterol-dependent pore-forming toxin and critical virulence determinant, pneumolysin.

Microbiology↗

Lubrication with sputtered MoS2 films.

Sputtered MoS2 films (2000-6500 A) were deposited on highly polished metal surfaces. These films have a low coefficient of friction (0.03-0.04) at speeds of 40-80 rpm and loads of 250-1000 grams. At loads of 250 grams the wear lives are over 0.5 million cycles, but at 1000 gram loads, it decreases to 38,000 cycles. Friction experiments and tensile tests have indicated that sputtered films have a strong adherence to metal surfaces. Electron transmission, diffraction and scanning electron microscopy show that these films have an extremely small particle size, less than 30 A in diameter, and are very dense and free from observable pinholes. The high kinetic energy of these sputtered species, the submicroscopic particle size and the sputter-etched substrate surface is responsible for strong adhesion and cohesion of the sputtered film.

Spalvins, T.↗

Lubrication with sputtered MoS2 films.

Sputtered MoS2 films (2000-6500 A) were deposited on highly polished metal surfaces. These films have a low coefficient of friction (0.03-0.04) at speeds of 40-80 rpm and loads of 250-1000 grams. At loads of 250 grams, the wear lives are over 0.5 million cycles, but at 1000 gram loads, it decreases to 38,000 cycles. Friction experiments and tensile tests have indicated that sputtered films have a strong adherence to metal surfaces. Electron transmission, diffraction, and scanning electron microscopy show that these films have an extremely small particle size less than 30 A in diameter and are very dense and free from observable pinholes.

Spalvins, T.↗

Dielectric constant of compressed gaseous and liquid oxygen.

The dielectric constants of compressed gaseous and liquid oxygen were measured on ten isoterms at temperatures between 100 and 300 K and on the saturated liquid boundary at temperatures between 55 and 154 K. Densities ranged from 0.06 to 1.30 grams per cu cm at pressures up to 33 MN per sq m. The dielectric constant measurements were combined with accurate density data to compute the Clausius-Mossotti function. This function was found to decrease for oxygen with density from a value of 0.1236 cu cm per gram at the low density limit to 0.1219 cu cm per gram near the triple point.

Younglove, B. A.↗

Evaluation of several additional dry lubricants for spacecraft applications

Four transfer-film ball-bearing retainer materials were evaluated for their lubricating ability and wear capability under conditions of 120-gram radial load, 450-gram axial load, 3600-rpm unidirectional rotation, 23 C ambient temperature, and less than .1 microtorr pressure, using R-2 sized unshielded ball bearings. The 'stop-test' criterion was a total of one billion revolutions or a torque buildup greater than 18 gm-cm per bearing pair. A PTFE-fiberglass-MoS2 composite, a PTFE-bronze composite, and a tantalum-molybdenum-MoS2 composite operated for one billion revolutions without reaching the 18-gram torque limit. A p-oxybenzoyl polymer-MoS2 composite operated sixteen million revolutions before reaching the 18-gm cm stop-test torque. The first three materials are considered as suitable lubricants under the test conditions employed.

Vest, C. E.↗

Automated single-slide staining device

A simple apparatus and method is disclosed for making individual single Gram stains on bacteria inoculated slides to assist in classifying bacteria in the laboratory as Gram-positive or Gram-negative. The apparatus involves positioning a single inoculated slide in a stationary position and thereafter automatically and sequentially flooding the slide with increments of a primary stain, a mordant, a decolorizer, a counterstain and a wash solution in a sequential manner without the individual lab technician touching the slide and with minimum danger of contamination thereof from other slides.

Wilkins, J. R.↗

An assessment of the micrometeoritic component in the Martian soil

Particles in the mass range from 10 to the minus 7th power to 10 to the minus 3rd power grams contribute 80 percent of the total mass influx of meteoritic material in the 10 to the minus 13th power to 10 to the 6th power gram mass range at Earth (Hughes, 1978). On Earth atmospheric entry, all but the smallest particles in the 10 to the minus 7th power to 10 to the minus 3rd power gram mass range, about 60 to 1200 micrometers in diameter, are heated sufficiently to melt and vaporize. Mars, because of its lower escape velocity and larger atmospheric scale height, is a much more favorable site for unmelted survival of micrometeorites on atmospheric deceleration. Researchers calculate that a significant fraction of particles throughout the 60 to 1200 micrometer diameter range will survive atmospheric entry unmelted. Thus returned Mars soils may offer a resource for sampling micrometeorites in a size range uncollectable in unaltered form at Earth. The addition of meteoritic material to the Mars soils should perturb their chemical composition, as has been detected using the soils on the Moon (Anders, et al., 1973). Using measured mass influx at Earth and estimates of the Mars/Earth flux ratio, researchers estimate a mass influx at Mars of between 2,700 and 202,000 metric tons per year.

Flynn, George J.↗

Phylogenetic and physiological diversity of microorganisms isolated from a deep greenland glacier ice core

We studied a sample from the GISP 2 (Greenland Ice Sheet Project) ice core to determine the diversity and survival of microorganisms trapped in the ice at least 120,000 years ago. Previously, we examined the phylogenetic relationships among 16S ribosomal DNA (rDNA) sequences in a clone library obtained by PCR amplification from genomic DNA extracted from anaerobic enrichments. Here we report the isolation of nearly 800 aerobic organisms that were grouped by morphology and amplified rDNA restriction analysis patterns to select isolates for further study. The phylogenetic analyses of 56 representative rDNA sequences showed that the isolates belonged to four major phylogenetic groups: the high-G+C gram-positives, low-G+C gram-positives, Proteobacteria, and the Cytophaga-Flavobacterium-Bacteroides group. The most abundant and diverse isolates were within the high-G+C gram-positive cluster that had not been represented in the clone library. The Jukes-Cantor evolutionary distance matrix results suggested that at least 7 isolates represent new species within characterized genera and that 49 are different strains of known species. The isolates were further categorized based on the isolation conditions, temperature range for growth, enzyme activity, antibiotic resistance, presence of plasmids, and strain-specific genomic variations. A significant observation with implications for the development of novel and more effective cultivation methods was that preliminary incubation in anaerobic and aerobic liquid prior to plating on agar media greatly increased the recovery of CFU from the ice core sample.

Bacteria/classification/genetics/isolation & purif↗

Molecular microbial diversity of a spacecraft assembly facility

In ongoing investigations to map and archive the microbial footprints in various components of the spacecraft and its accessories, we have examined the microbial populations of the Jet Propulsion Laboratory's Spacecraft Assembly Facility (JPL-SAF). Witness plates made up of spacecraft materials, some painted with spacecraft qualified paints, were exposed for approximately 7 to 9 months at JPL-SAF and examined the particulate materials collected for the incidence of total cultivable aerobic heterotrophs and heat-tolerant (80 degrees C for 15-min.) spore-formers. The results showed that the witness plates coated with spacecraft qualified paints attracted more dust particles than the non-coated stainless steel witness plates. Among the four paints tested, witness plates coated with NS43G accumulated the highest number of particles, and hence attracted more cultivable microbes. The conventional microbiological examination revealed that the JPL-SAF harbors mainly Gram-positive microbes and mostly spore-forming Bacillus species. Most of the isolated microbes were heat resistant to 80 degrees C and proliferate at 60 degrees C. The phylogenetic relationships among 23 cultivable heat-tolerant microbes were examined using a battery of morphological, physiological, molecular and chemotaxonomic characterizations. By 16S rDNA sequence analysis, the isolates fell into seven clades: Bacillus licheniformis, B. pumilus, B. cereus, B. circulans, Staphylococcus capitis, Planococcus sp. and Micrococcus lylae. In contrast to the cultivable approach, direct DNA isolation, cloning and 16S rDNA sequencing analysis revealed equal representation of both Gram-positive and Gram-negative microorganisms.

Industry↗

Fabrication and Deployment Testing of Solar Sail Quadrants for a 20-Meter Solar Sail Ground Test System Demonstration

A 20-meter Scalable Square Solar Sail (S(sup 4)) System was produced and successfully completed functional vacuum testing in NASA Glenn's Space Power Facility at Plum Brook Station Ohio in May 2005. The S(sup 4) system was designed and developed by ATK Space Systems, and the design and production of the Solar Sails for this system was carried out by SRS Technologies. The S(sup 4) system consists of a central structure with four deployable carbon fiber masts that support four triangular sails. SRS has developed an effective and efficient design for triangular sail quadrants that are supported at three points and provide a flat reflective surface with a high fill factor. This sail design is robust enough for deployments in a one atmosphere, one gravity environment and incorporates several advanced features including adhesiveless seaming of membrane strips, compliant edge borders to allow for film membrane cord strain mismatch without causing wrinkling and low mass (3% of total sail mass) ripstop. This paper will outline some of the sail design and fabrication processes and the mature production, packaging and deployment processes that have been developed. This paper will also detail the successful ambient and vacuum testing of the sails and the ATK spacecraft structure. Based on recent experience and testing, SRS is confidant that high Technology Readiness Level (TRL) 5-6 solar sails in the 40-120-meter size range with areal density in the 4-5 grams per square meters (sail minus structure) range can be produced with existing technology. Additional film production research will lead to further reductions in film thickness to less than 1 micron enabling production of sails with areal densities as low as 2.0 grams per square meters using the current design, resulting in a system areal densities as low as 5.3 grams per square meters (sail and structure). These areal densities are low enough to allow nearly all of the Solar Sail missions that have been proposed by the scientific community. The fundamental technologies required to produce these systems has been demonstrated on the 20-meter S(sup 4) sails that have recently completed ground testing demonstrating a mature and technology suitable for incorporation into future flight validation and future mission. Solar Sails can support NASA's Vision for Space Exploration by allowing communication satellite orbits that can maintain continuous communication with the polar regions of the Moon and Mars and to support solar weather monitoring to provide early warning of solar flares and storms that could threaten the safety of astronauts and other spacecraft.

Laue, Greg↗

Master Software Requirements Specification

A basic function of a computational grid such as the NASA Information Power Grid (IPG) is to allow users to execute applications on remote computer systems. The Globus Resource Allocation Manager (GRAM) provides this functionality in the IPG and many other grids at this time. While the functionality provided by GRAM clients is adequate, GRAM does not support useful features such as staging several sets of files, running more than one executable in a single job submission, and maintaining historical information about execution operations. This specification is intended to provide the environmental and software functional requirements for the IPG Job Manager V2.0 being developed by AMTI for NASA.

Hu, Chaumin↗

Earth Global Reference Atmospheric Model 2007 (Earth-GRAM07)

GRAM is a Fortran software package that can run on a variety of platforms including PC's. GRAM provides values of atmospheric quantities such as temperature, pressure, density, winds, constituents, etc. GRAM99 covers all global locations, all months, and heights from the surface to approx. 1000 km). Dispersions (perturbations) of these parameters are also provided and are spatially and temporally correlated. GRAM can be run in a stand-alone mode or called as a subroutine from a trajectory program. GRAM07 is diagnostic, not prognostic (i.e., it describes the atmosphere, but it does not forecast). The source code is distributed free-of-charge to eligible recipients.

Leslie, Fred W.↗

MAGIC: A Tool for Combining, Interpolating, and Processing Magnetograms

Transients in the solar coronal magnetic field are ultimately the source of space weather. Models which seek to track the evolution of the coronal field require magnetogram images to be used as boundary conditions. These magnetograms are obtained by numerous instruments with different cadences and resolutions. A tool is required which allows modelers to fmd all available data and use them to craft accurate and physically consistent boundary conditions for their models. We have developed a software tool, MAGIC (MAGnetogram Interpolation and Composition), to perform exactly this function. MAGIC can manage the acquisition of magneto gram data, cast it into a source-independent format, and then perform the necessary spatial and temporal interpolation to provide magnetic field values as requested onto model-defined grids. MAGIC has the ability to patch magneto grams from different sources together providing a more complete picture of the Sun's field than is possible from single magneto grams. In doing this, care must be taken so as not to introduce nonphysical current densities along the seam between magnetograms. We have designed a method which minimizes these spurious current densities. MAGIC also includes a number of post-processing tools which can provide additional information to models. For example, MAGIC includes an interface to the DA VE4VM tool which derives surface flow velocities from the time evolution of surface magnetic field. MAGIC has been developed as an application of the KAMELEON data formatting toolkit which has been developed by the CCMC.

Allred, Joel↗