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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2014

Distance Restraints from Crosslinking Mass Spectrometry: Mining a Molecular Dynamics Simulation Database to Evaluate Lysine-Lysine Distances

Integrative structural biology models the structures of protein complexes that are intractable by classical structural methods (because of extreme size, dynamics, or heterogeneity) by combining computational structural modeling with data from experimental methods. One such method is chemical cross-linking mass spectrometry (XL-MS), in which cross-linked peptides, derived from a covalently cross-linked protein complex and identified by liquid chromatography-mass spectrometry, pinpoint protein residues close in three-dimensional space. The commonly used lysine-reactive N-hydroxysuccinimide ester reagents disuccinimidylsuberate (DSS) and bis(sulfosuccinimidyl)suberate (BS3) have a linker arm that is 11.4 Å long when fully extended. However, XL-MS studies on proteins of known structure frequently report cross-links that exceed this distance. Typically, a tolerance of ~3 Å is added to the theoretical maximum to account for this observation, with little justification for the value chosen. We used the Dynameomics database, a repository of high-quality molecular dynamics simulations of 807 proteins representative of all protein folds, to investigate the change in lysine-lysine distances resulting from native-state dynamics on the time-scale of tens of nanoseconds. We conclude that observed cross-links are consistent with a protein structure if the distance between cross-linked lysine Nζ atoms is less than the cross-linker length plus 11.3 Å. For DSS or BS3, this corresponds to a Cα to Cα distance of 30.4 Å. This analysis provides a theoretical basis for the widespread practice of adding a tolerance to the crosslinker length when comparing XL-MS results to structures, and indicates the appropriate values of an XLMS derived distance constraint to use in structural modeling.

Environmental Molecular Sciences Laboratory↗
DOE OSTI2023

Optical spectroscopy of molten fluorides: Methods, electronic and vibrational data, structural interpretation, and relevance to radiative heat transfer

In this study, to help address the need for predicting radiative heat transfer (RHT) behavior of molten salts, we conducted a comprehensive review of methods and data from optical spectroscopic measurements on molten fluoride salts. Transmittance, reflectance, and trans-reflectance experimental methods are discussed, along with the corresponding data reduction methodology and the limitations of each technique. Optical spectroscopy is a convenient indirect probe for changes in structural parameters with temperature and composition. Electronic and vibrational absorption data for transition-metal, lanthanide, and actinide solutes and vibrational absorption data for alkali and alkaline earth fluoride solvents are compiled, and the corresponding structural interpretation is discussed and compared with other experimental and theoretical work. We find that solvent and solute vibrational absorption can be significant in the mid-infrared, resulting in near-infrared edges of significance to RHT. Extrapolation and averaging of existing edge data leads to estimated gray absorption coefficient values at 700 °C of 546 m —1 for FLiBe and 276 m —1 for FLiNaK, both within the range of 1 – 6000 m —1 identified to be of engineering relevance for radiative heat transfer analysis.

36 MATERIALS SCIENCE↗
DOE OSTI2014

A method for measuring coherent elastic neutrino-nucleus scattering at a far off-axis high-energy neutrino beam target

We present an experimental method for measuring the process of coherent elastic neutrino-nucleus scattering (CENNS). This method uses a detector situated transverse to a high-energy neutrino beam production target. This detector would be sensitive to the low-energy neutrinos arising from decay-at-rest pions in the target. We discuss the physics motivation for making this measurement and outline the predicted backgrounds and sensitivities using this approach. We report a measurement of neutron backgrounds as found in an off-axis surface location of the Fermilab Booster Neutrino Beam (BNB) target. The results indicate that the Fermilab BNB target is a favorable location for a CENNS experiment.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2012

Electric field-perturbation measurement of the interaction between two laser-induced plasmas

The interaction between two ns-laser-induced plasmas in air at the early-stage of expansion has been analyzed by using a method based on the direct measurement of the perturbation of an externally applied electric field. In this experimental method, the plasmas were produced by focusing two laser beams between the plates of a parallel-plane-charged capacitor. These plasmas produce a perturbation in the electric field of the capacitor which can be measured as a voltage change across a resistor connected to the ground plate. It was found that for delays shorter than 5 ns, the interaction between plasmas is mainly due to the interaction of the dipole-charge distribution of each plasma. For longer time delays, the shielding effect was dominant.

43 PARTICLE ACCELERATORS↗
DOE OSTI2013

Temporal evolution of femtosecond laser induced plasma filament in air and N{sub 2}

We present single shot, high resolution, time-resolved measurements of the relaxation of laser induced plasma filaments in air and in N{sub 2} gas. Based on the measurements of the time dependent electromagnetic signal in a waveguide, an accurate and simple derivation of the electron density in the filament is demonstrated. This experimental method does not require prior knowledge of filament dimensions or control over its exact spatial location. The experimental results are compared to numerical simulations of air plasma chemistry. Results reveal the role of various decay mechanisms including the importance of O{sub 4}{sup +} molecular levels.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

The Fifth International Workshop on Ice Nucleation phase 2 (FIN-02): laboratory intercomparison of ice nucleation measurements

Abstract. The second phase of the Fifth International Ice Nucleation Workshop (FIN-02)involved the gathering of a large number of researchers at the KarlsruheInstitute of Technology's Aerosol Interactions and Dynamics of the Atmosphere(AIDA) facility to promote characterization and understanding of icenucleation measurements made by a variety of methods used worldwide.Compared to the previous workshop in 2007, participation was doubled,reflecting a vibrant research area. Experimental methods involved sampling ofaerosol particles by direct processing ice nucleation measuring systems fromthe same volume of air in separate experiments using different ice nucleatingparticle (INP) types, and collections of aerosol particle samples ontofilters or into liquid for sharing amongst measurement techniques thatpost-process these samples. In this manner, any errors introduced bydifferences in generation methods when samples are shared across laboratorieswere mitigated. Furthermore, as much as possible, aerosol particle sizedistribution was controlled so that the size limitations of different methodswere minimized. The results presented here use data from the workshop toassess the comparability of immersion freezing measurement methods activatingINPs in bulk suspensions, methods that activate INPs in condensation and/orimmersion freezing modes as single particles on a substrate, continuous flowdiffusion chambers (CFDCs) directly sampling and processing particles wellabove water saturation to maximize immersion and subsequent freezing ofaerosol particles, and expansion cloud chamber simulations in which liquidcloud droplets were first activated on aerosol particles prior to freezing.The AIDA expansion chamber measurements are expected to be the closestrepresentation to INP activation in atmospheric cloud parcels in thesecomparisons, due to exposing particles freely to adiabatic cooling. The different particle types used as INPs included the minerals illite NX andpotassium feldspar (K-feldspar), two natural soil dusts representative of arable sandy loam(Argentina) and highly erodible sandy dryland (Tunisia) soils, respectively,and a bacterial INP (Snomax ® ). Consideredtogether, the agreement among post-processed immersion freezing measurementsof the numbers and fractions of particles active at different temperaturesfollowing bulk collection of particles into liquid was excellent, withpossible temperature uncertainties inferred to be a key factor in determiningINP uncertainties. Collection onto filters for rinsing versus directly intoliquid in impingers made little difference. For methods that activatedcollected single particles on a substrate at a controlled humidity at orabove water saturation, agreement with immersion freezing methods was good inmost cases, but was biased low in a few others for reasons that have not beenresolved, but could relate to water vapor competition effects. AmongstCFDC-style instruments, various factors requiring (variable) highersupersaturations to achieve equivalent immersion freezing activation dominatethe uncertainty between these measurements, and for comparison with bulkimmersion freezing methods. When operated above water saturation to includeassessment of immersion freezing, CFDC measurements often measured at orabove the upper bound of immersion freezing device measurements, but oftenunderestimated INP concentration in comparison to an immersion freezingmethod that first activates all particles into liquid droplets prior tocooling (the PIMCA-PINC device, or Portable Immersion Mode Cooling chAmber–Portable Ice Nucleation Chamber), and typically slightly underestimated INPnumber concentrations in comparison to cloud parcel expansions in the AIDAchamber; this can be largely mitigated when it is possible to raise therelative humidity to sufficiently high values in the CFDCs, although this isnot always possible operationally. Correspondence of measurements of INPs among direct sampling andpost-processing systems varied depending on the INP type. Agreement was bestfor Snomax ® particles in the temperature regimecolder than −10 ∘ C, where their ice nucleation activity is nearlymaximized and changes very little with temperature. At temperatures warmer than −10 ∘ C, Snomax ® INP measurements (allvia freezing of suspensions) demonstrated discrepancies consistent withprevious reports of the instability of its protein aggregates that appear tomake it less suitable as a calibration INP at these temperatures. ForArgentinian soil dust particles, there was excellent agreement across allmeasurement methods; measures ranged within 1 order of magnitude for INPnumber concentrations, active fractions and calculated active site densitiesover a 25 to 30 ∘ C range and 5 to 8 orders of correspondingmagnitude change in number concentrations. This was also the case for alltemperatures warmer than −25 ∘ C in Tunisian dust experiments. Incontrast, discrepancies in measurements of INP concentrations or active sitedensities that exceeded 2 orders of magnitude across a broad range of temperaturemeasurements found at temperatures warmer than −25 ∘ C in a previous study werereplicated for illite NX. Discrepancies also exceeded 2 orders of magnitude attemperatures of −20 to −25 ∘ C for potassium feldspar (K-feldspar), but these coincidedwith the range of temperatures at which INP concentrations increase rapidly atapproximately an order of magnitude per 2 ∘ C cooling forK-feldspar. These few discrepancies did not outweigh the overall positive outcomes of theworkshop activity, nor the future utility of this data set or future similarefforts for resolving remaining measurement issues. Measurements of the samematerials were repeatable over the time of the workshop and demonstratedstrong consistency with prior studies, as reflected by agreement of databroadly with parameterizations of different specific or general (e.g., soildust) aerosol types. The divergent measurements of the INP activity of illiteNX by direct versus post-processing methods were not repeated for otherparticle types, and the Snomax ® datademonstrated that, at least for a biological INP type, there is no expectedmeasurement bias between bulk collection and direct immediately processedfreezing methods to as warm as −10 ∘ C. Since particle size rangeswere limited for this workshop, it can be expected that for atmosphericpopulations of INPs, measurement discrepancies will appear due to thedifferent capabilities of methods for sampling the full aerosol sizedistribution, or due to limitations on achieving sufficient watersupersaturations to fully capture immersion freezing in direct processinginstruments. Overall, this workshop presents an improved picture of presentcapabilities for measuring INPs than in past workshops, and providesdirection toward addressing remaining measurement issues.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Viscous Behavior of Clay‐Rich Rocks and Its Role in Focused Fluid Flow

Abstract Focused fluid flow is common in sedimentary basins worldwide, where flow structures often penetrate through sandy reservoir rocks, and clay‐rich caprocks. To better understand the mechanisms forming such structures, the impacts of the viscoelastic deformation and strongly nonlinear porosity‐dependent permeability of clay‐rich materials are assessed from an experimental and numerical modeling perspective. The experimental methods to measure the poroviscoelastic and transport properties of intact and remolded shale have been developed, and the experimental data is used to constrain the numerical simulations. It is demonstrated that viscoelastic deformation combined with nonlinear porosity‐dependent permeability triggers the development of localized flow channels, often imaged as seismic chimneys. The permeability inside a channel increases by several orders of magnitude compared to the background values. In addition, the propagation time scale and the channel size strongly depend on the material properties of the fluid and the rock. The time‐dependent behavior of the clay‐rich rock may play a key role in the long‐term integrity of the subsurface formations.

58 GEOSCIENCES↗
DOE OSTI2016

Optical method for distance and displacement measurements of the probe-sample separation in a scanning near-field optical microscope

In this work, we present an alternative optical method to determine the probe-sample separation distance in a scanning near-field optical microscope. The experimental method is based in a Lloyd’s mirror interferometer and offers a measurement precision deviation of ∼100 nm using digital image processing and numerical analysis. The technique can also be strategically combined with the characterization of piezoelectric actuators and stability evaluation of the optical system. It also opens the possibility for the development of an automatic approximation control system valid for probe-sample distances from 5 to 500 μm.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2012

Self-assembling supramolecular systems of different symmetry formed by wedged macromolecular dendrons

The main stages of the self-assembling of supramolecular ensembles have been revealed by studying different functional wedged macromolecules: polymethacrylates with tapered side chains based on gallic acid, their macromonomers, and salts of 2,3,4- and 3,4,5-tris(dodecyloxy)benzenesulphonic acid. The first stage is the formation of individual supramolecular aggregates (long cylinders or spherical micelles) due to the weak noncovalent interactions of mesogenic groups and the subsequent ordering in these aggregates, which is accompanied by a decrease in the free energy of the system. Supramolecular aggregates, in turn, form 2D or 3D lattices. The shape of supramolecular aggregates and its change with temperature are delicate functions of the mesogen chemical structure; this circumstance makes it possible to rationally design complex self-assembling systems with the ability to respond smartly to external stimuli. X-ray diffraction analysis allows one to study the structure of supramolecular systems with different degrees of order, determine the type of mesophases formed by these systems, and reveal the phase behavior of the material. Particular attention has been paid to the method for reconstruction of electron density distribution from the relative reflection intensity. The application of a suite of experimental methods, including wide- and small-angle X-ray diffraction, molecular modeling, differential scanning calorimetry, and polarization optical microscopy, allows one to establish the relationship between the shape of the structural unit (molecule or molecular aggregate), the nature of the interaction, and the phase behavior of the material.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2016

SU-G-201-06: Directional Low-Dose Rate Brachytherapy: Determination of the TG-43 Dose-Rate Constant Analog for a New Pd-103 Source

Purpose: The aim of this work is to determine the TG-43 dose-rate constant analog for a new directional low-dose rate brachytherapy source based on experimental methods and comparison to Monte Carlo simulations. The CivaSheet™ is a new commercially available planar source array comprised of a variable number of discrete directional source elements called “CivaDots”. Given the directional nature and non-conventional design of the source, modifications to the AAPM TG-43 protocol for dosimetry are required. As a result, various parameters of the TG-43 dosimetric formalism have to be adapted to accommodate this source. This work focuses on the dose-rate constant analog determination for a CivaDot. Methods: Dose to water measurements of the CivaDot were performed in a polymethyl methacrylate phantom (20×20×12 cm{sup 3}) using thermoluminescent dosimeters (TLDs) and Gafchromic EBT3 film. The source was placed in the center of the phantom, and nine TLD micro-cubes were irradiated along its central axis at a distance of 1 cm. For the film measurements, the TLDs were substituted by a (3×3) cm{sup 2} EBT3 film. Primary air-kerma strength measurements of the source were performed using a variable-aperture free-air chamber. Finally, the source was modeled using the Monte Carlo N-Particle Transport Code 6. Results: Dose-rate constant analog observed for a total of eight CivaDots using TLDs and five CivaDots using EBT3 film was within ±7.0% and ±2.9% of the Monte Carlo predicted value respectively. The average difference observed was −4.8% and −0.1% with a standard deviation of 1.7% and 2.1% for the TLD and the film measurements respectively, which are both within the comparison uncertainty. Conclusion: A preliminary investigation to determine the doserate constant analog for a CivaDot was conducted successfully with good agreement between experimental and Monte Carlo based methods. This work will aid in the eventual realization of a clinically-viable dosimetric framework for the CivaSheet. This work was partially supported by NCI contract (HHSN261201200052C) through CivaTech Oncology Inc.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Indirect methods in nuclear astrophysics with relativistic radioactive beams

Reactions with radioactive nuclear beams at relativistic energies have opened new doors to clarify the mechanisms of stellar evolution and cataclysmic events involving stars and during the big bang epoch. Numerous nuclear reactions of astrophysical interest cannot be assessed directly in laboratory experiments. Ironically, some of the information needed to describe such reactions, at extremely low energies (e.g., keVs), can only be studied on Earth by using relativistic collisions between heavy ions at GeV energies. In this contribution, we make a short review of experiments with relativistic radioactive beams and of the theoretical methods needed to understand the physics of stars, adding to the knowledge inferred from astronomical observations. We continue by introducing a more detailed description of how the use of relativistic radioactive beams can help to solve astrophysical puzzles and several successful experimental methods. State-of-the-art theories are discussed at some length with the purpose of helping us understand the experimental results reported. The review is not complete and we have focused most of it to traditional methods aiming at the determination of the equation of state of symmetric and asymmetric nuclear matter and the role of the symmetry energy. Whenever possible, under the limitations of our present understanding of experimental data and theory, we try to pinpoint the information still missing to further understand how stars evolve, explode, and how their internal structure might be. We try to convey the idea that in order to improve microscopic theories for many-body calculations, nuclear structure, nuclear reactions, and astrophysics, and in order to constrain and allow for convergence of our understanding of stars, we still need considerable improvements in terms of accuracy of experiments and the development of new and dedicated nuclear facilities to study relativistic reactions with radioactive beams.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Unravelling Disorder in Aperiodic Crystals – Diffuse Scattering and Atomic Resolution Holography

The atomic–scale disorder of aperiodic crystals, and quasicrystals in particular, is inherently difficult to explore by experimental methods due to their complex atomic arrangements. Two advanced characterization techniques, a revived and an emerging one, offer direct experimental access even to such complex atomic structures: Diffuse Scattering and Atomic Resolution Holography. Finally, in this overview, we introduce their specific application to aperiodic crystals and discuss their merits and difficulties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Electromodulation spectroscopy of highly mismatched alloys

The electronic band structure of highly mismatched alloys (HMAs) was very successfully explored using electromodulation (EM) spectroscopy, i.e., photoreflectance (PR), electroreflectance, and contactless electroreflectance (CER). With these techniques, the optical transitions between the valence band and the E – and E + bands, which are formed in the conduction band of dilute nitrides and dilute oxides, were observed and used to formulate the band anticrossing model, which well describes the electronic band structure of HMAs. In this tutorial, principles of EM spectroscopy are presented and shortly discussed. Special attention is focused on PR and CER techniques, which are nondestructive and have recently been widely applied to study the electronic band structure of HMAs and low dimensional heterostructures containing HMAs. For these methods, experimental setups are described, and theoretical approaches to analyze the experimental data are introduced. Finally, to show the utility of EM spectroscopy, selected examples of the application of this method to study various issues in HMAs are presented and briefly discussed.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Prediction of Research/Motor Octane Number and Octane Sensitivity Using Artificial Neural Networks

Octane sensitivity (OS), dfined as the research octane number (RON) minus the motor octane number (MON) of a given fuel, has gained interest among researchers due to its apparent ffect on knocking conditions in internal combustion engines. Compounds with a high OS enable higher efficiencies, especially with respect to advanced compression ignition engines. RON/MON must be experimentally tested to determine OS; however, the experimental methods utilized require a substantial amount of time, a significant monetary investment, and specialized equipment. To this end, predictive computational models trained with existing experimental data and molecular properties would allow for the preemptive screening of compounds prior to performing these experiments. The present work proposes two methods for predicting the OS of a given compound: using artficial neural networks (ANNs) trained with quantitative structure-property relationship (QSPR) descriptors to predict RON and MON individually to compute OS from RON/MON predictions (derived octane sensitivity, dOS), and using an ANN trained with QSPR descriptors to directly predict OS. ANNs trained to predict RON and MON achieved test set root-mean-square errors (RMSEs) of 10.499 and 7.551 respectively. dOS calculations were found to have a test set RMSE of 6.432 while predicting OS directly resulted in a test set RMSE of 7.019, showing it is more bene cial to obtain OS from RON/MON predictions than predicting it directly. Furthermore, relationships between individual QSPR descriptors and RON/MON/OS are discussed, highlighting correlations between specfic molecular features and these properties.

09 BIOMASS FUELS↗
DOE OSTI2018

Electrokinetic flow of an aqueous electrolyte in amorphous silica nanotubes

Here, we study the pressure-driven flow of aqueous NaCl in amorphous silica nanotubes using nonequilibrium molecular dynamics simulations featuring both polarizable and non-polarizable molecular models. Different pressures, electrolyte concentrations and pore sizes are examined. Our results indicate a flow that deviates considerably from the predictions of Poiseuille fluid mechanics. Due to preferential adsorption of the different ionic species by surface SiO– or SiOH groups, we find that a significant electric current is generated, but with opposite polarities using polarizable vs. fixed charge models for water and ions, emphasizing the need for careful parameterization in such complex systems. We also examine the influence of partial deprotonation of the silica surface, and we find that much more current is generated in a dehydrogenated nanopore, even though the overall efficiency remains low. These findings indicate that different methods of nanopore preparation, which can produce a range of surface properties, should be examined more closely in the related experimental methods to generate electrokinetic current.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

TRUST Sensors in Environments: Fiber Optic Displacement (SE-FOD) Report, Release FY24

The objective of the Delivery Environments (DE) Testbeds to Reduce Uncertainty in Simulations and Tests (TRUST) project is to quantify and help increase confidence in specific areas of computational and experimental capabilities that are applicable to the development, on-target assessment, and qualification of current and future delivery environments. More complete quantification of confidence in experimental and computational capabilities and the sufficient increase of confidence in those capabilities is critical to improving weapons engineering design, qualification, and assessment efforts that are critical to the current and future stockpile. This work uses and provides feedback on analysis tools and experimental results databases for efficient and responsive engineering which are currently under development. Under the TRUST work package, there are five testbeds and their associated engineering analysis baseline models (EABMs): 1. Contact Thermal Conductivity (CTC), 2. Nonlinear Dynamics (ND), 3. Sensors in Environments: Accelerometers (SE-A), 4. Sensors in Environments: Fiber Optic Displacement Gauges (SE-FOD), and 5. Sensors in Environments: Thermocouples (SE-TC). The TRUST project uses single-feature testbeds to quantify uncertainties in specific models and experiments and to identify capability development needs that can help to reduce these uncertainties. Each testbed is designed, configured, and tested in collaboration with groups with design and experimental capability: E-14 and MPA-CINT. The complementary simulations are conducted using W-13 analysis tools and stored in model repositories with plans for incremental progress toward EABM requirements. W-13 extends and exercises the testbed simulations in collaboration with experimentalists for uncertainty quantification of current and future materials, geometries, and environments. Additionally, TRUST is intended to provide engineers in W-13 and E-14 with experience in both numerical simulations and experimental methods through cross-discipline collaborations. Following the introduction to the TRUST project, the remainder of this report focuses on experimental, modeling and simulation, and analysis efforts conducted in FY24 relevant to the TRUST Sensors in Environments: Fiber Optic Displacement (SE-FOD) testbed.

42 ENGINEERING↗
DOE OSTI2023

A quantitative method to determine the region not influenced by injected interstitial and surface effects during void swelling in ion-irradiated metals

We propose and demonstrate a microstructurally-based experimental method to quantitively determine the depth regions in self-ion-irradiated metals that are affected by the injected interstitial effect and various surface effects, focusing on the choice of safe analysis zones to minimize the impact of these phenomena. The goal is to define the depth ranges where extracted data can be confidently applied to ion-neutron correlations for reactor application. Since ion energies in the range of 1–5 MeV are most frequently employed by the radiation effects community, irradiations were conducted at four energies in this range, all proceeding at 475 °C. The experiment was conducted on relatively pure single crystal iron to focus only on physical phenomena, avoiding the influence of possibly confounding chemical or segregation processes. Care was also taken to minimize the influence of other physical factors such as crystalline orientation. It was shown that, at 475 °C, ion energies of ≤1 MeV were too shallow in penetration and did not yield a safe depth range, but irradiations at 2.5 MeV and above yielded useful safe zones with predicted swelling behavior becoming independent of ion energy. The surface-affected zone width was found to be roughly twice that of the void-denuded zone width and to be independent of accumulated displacement dose. The largest injected-interstitial effect arises from the injected interstitial depression of void nucleation and growth. The interstitial-affected region starts at about one half of the projected range and does not show any “spreading” of its influence in depth as the peak damage level increases from 50 to 100 dpa. This study provides some confidence that enhances the credibility of ion simulation when applied to prediction of void swelling in neutron environments.

36 MATERIALS SCIENCE↗
DOE OSTI2012

Advances, Interactions, and Future Developments in the CNS, Phenix, and Rosetta Structural Biology Software Systems; For Annual Review of Biophysics

Advances in our understanding of macromolecular structure come from experimental methods, such as X-ray crystallography, and also computational analysis of the growing number of atomic models obtained from such experiments. The later analyses have made it possible to develop powerful tools for structure prediction and optimization in the absence of experimental data. In recent years a synergy between these computational methods for crystallographic structure determination and structure prediction and optimization has begun to be exploited. We review some of the advances in the algorithms used for crystallographic structure determination in the Phenix and Crystallography & NMR System software packages, and describe how methods from ab initio structure prediction and refinement in Rosetta have been applied to challenging crystallographic problems. The prospects for future improvement of these methods are discussed.

Basic Biological Sciences(59)↗