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At least 199 records · Page 11

Analytical and Computational Advances, Opportunities, and Challenges in Marine Organic Biogeochemistry in an Era of “Omics”

Advances in sampling tools, analytical methods, and data handling capabilities have been fundamental to the growth of marine organic biogeochemistry over the past four decades. There has always been a strong feedback between analytical advances and scientific advances. However, whereas advances in analytical technology were often the driving force that made possible progress in elucidating the sources and fate of organic matter in the ocean in the first decades of marine organic biogeochemistry, today process-based scientific questions should drive analytical developments. Several paradigm shifts and challenges for the future are related to the intersection between analytical progress and scientific evolution. Untargeted “molecular headhunting” for its own sake is now being subsumed into process-driven targeted investigations that ask new questions and thus require new analytical capabilities. However, there are still major gaps in characterizing the chemical composition and biochemical behavior of macromolecules, as well as in generating reference standards for relevant types of organic matter. Field-based measurements are now routinely complemented by controlled laboratory experiments and in situ rate measurements of key biogeochemical processes. And finally, the multidisciplinary investigations that are becoming more common generate large and diverse datasets, requiring innovative computational tools to integrate often disparate data sets, including better global coverage and mapping. Here, we compile examples of developments in analytical methods that have enabled transformative scientific advances since 2004, and we project some challenges and opportunities in the near future. We believe that addressing these challenges and capitalizing on these opportunities will ensure continued progress in understanding the cycling of organic carbon in the ocean.

59 BASIC BIOLOGICAL SCIENCES↗

Simulations of ocean deoxygenation in the historical era: insights from forced and coupled models

Ocean deoxygenation due to anthropogenic warming represents a major threat to marine ecosystems and fisheries. Challenges remain in simulating the modern observed changes in the dissolved oxygen (O 2 ). Here, we present an analysis of upper ocean (0-700m) deoxygenation in recent decades from a suite of the Coupled Model Intercomparison Project phase 6 (CMIP6) ocean biogeochemical simulations. The physics and biogeochemical simulations include both ocean-only (the Ocean Model Intercomparison Project Phase 1 and 2, OMIP1 and OMIP2) and coupled Earth system (CMIP6 Historical) configurations. We examine simulated changes in the O 2 inventory and ocean heat content (OHC) over the past 5 decades across models. The models simulate spatially divergent evolution of O 2 trends over the past 5 decades. The trend (multi-model mean and spread) for upper ocean global O 2 inventory for each of the MIP simulations over the past 5 decades is 0.03 ± 0.39×10 14 [mol/decade] for OMIP1, -0.37 ± 0.15×10 14 [mol/decade] for OMIP2, and -1.06 ± 0.68×10 14 [mol/decade] for CMIP6 Historical, respectively. The trend in the upper ocean global O2 inventory for the latest observations based on the World Ocean Database 2018 is -0.98×10 14 [mol/decade], in line with the CMIP6 Historical multi-model mean, though this recent observations-based trend estimate is weaker than previously reported trends. A comparison across ocean-only simulations from OMIP1 and OMIP2 suggests that differences in atmospheric forcing such as surface wind explain the simulated divergence across configurations in O 2 inventory changes. Additionally, a comparison of coupled model simulations from the CMIP6 Historical configuration indicates that differences in background mean states due to differences in spin-up duration and equilibrium states result in substantial differences in the climate change response of O 2 . Finally, we discuss gaps and uncertainties in both ocean biogeochemical simulations and observations and explore possible future coordinated ocean biogeochemistry simulations to fill in gaps and unravel the mechanisms controlling the O 2 changes.

54 ENVIRONMENTAL SCIENCES↗

Interrogating the role of the milk microbiome in mastitis in the multi-omics era

There is growing interest in a functional understanding of milk-associated microbiota as there is ample evidence that host-associated microbial communities play an active role in host health and phenotype. Mastitis, characterized by painful inflammation of the mammary gland, is prevalent among lactating humans and agricultural animals and is associated with significant clinical and economic consequences. The etiology of mastitis is complex and polymicrobial and correlative studies have indicated alterations in milk microbial community composition. Recent evidence is beginning to suggest that a causal relationship may exist between the milk microbiota and host phenotype in mastitis. Multi-omic approaches can be leveraged to gain a mechanistic, molecular level understanding of how the milk microbiome might modulate host physiology, thereby informing strategies to prevent and ameliorate mastitis. In this paper, we review existing studies that have utilized omics approaches to investigate the role of the milk microbiome in mastitis. We also summarize the strengths and challenges associated with the different omics techniques including metagenomics, metatranscriptomics, metaproteomics, metabolomics and lipidomics and provide perspective on the integration of multiple omics technologies for a better functional understanding of the milk microbiome.

metabolomics↗

Highlights of Discoveries for δ Scuti Variable Stars from the Kepler Era

The NASA Kepler and follow-on K2 mission (2009–2018) left a legacy of data and discoveries, finding thousands of exoplanets, and also obtaining high-precision long time-series data for hundreds of thousands of stars, including many types of pulsating variables. Here we highlight a few of the ongoing discoveries from Kepler data on δ Scuti pulsating variables, which are core hydrogen-burning stars of about twice the mass of the Sun. We discuss many unsolved problems surrounding the properties of the variability in these stars, and the progress enabled by Kepler data in using pulsations to infer their interior structure, a field of research known as asteroseismology.

79 ASTRONOMY AND ASTROPHYSICS↗

Status on Genetic Resistance to Rice Blast Disease in the Post-Genomic Era

Rice blast, caused by Magnaporthe oryzae, is a major threat to global rice production, necessitating the development of resistant cultivars through genetic improvement. Breakthroughs in rice genomics, including the complete genome sequencing of japonica and indica subspecies and the availability of various sequence-based molecular markers, have greatly advanced the genetic analysis of blast resistance. To date, approximately 122 blast-resistance genes have been identified, with 39 of these genes cloned and molecularly characterized. The application of these findings in marker-assisted selection (MAS) has significantly improved rice breeding, allowing for the efficient integration of multiple resistance genes into elite cultivars, enhancing both the durability and spectrum of resistance. Pangenomic studies, along with AI-driven tools like AlphaFold2, RoseTTAFold, and AlphaFold3, have further accelerated the identification and functional characterization of resistance genes, expediting the breeding process. Future rice blast disease management will depend on leveraging these advanced genomic and computational technologies. Emphasis should be placed on enhancing computational tools for the large-scale screening of resistance genes and utilizing gene editing technologies such as CRISPR-Cas9 for functional validation and targeted resistance enhancement and deployment. These approaches will be crucial for advancing rice blast resistance, ensuring food security, and promoting agricultural sustainability.

Pedrozo, Rodrigo↗

A Comprehensive Analysis of NGC 2158 in the Gaia Era: Photometric Parameters, Apex, and Orbit

We present an investigation of NGC 2158 using Gaia DR2 data. We identified 800 most likely cluster members with membership probability higher than 90%. The mean proper motions of this object are determined as (μ {sub x} = −0.203 ± 0.003, μ {sub y} = −1.99 ± 0.004) mas yr{sup −1}. The limiting radius, log(age), and distance of the cluster are obtained as 23.5 arcmin, 9.38 ± 0.04 Gyr, and 4.69 ± 0.22 kpc, respectively. The overall mass function slope (0.93 ± 0.14) is flatter than the Salpeter value (1.35) within the mass range of 1.17–1.44 M {sub ⊙}. This cluster also shows the mass-segregation effect and our study demonstrates that NGC 2158 is a dynamically relaxed open cluster. Using the apex diagram (AD), the apex coordinates of the cluster are obtained in different ways and are examined using the (μ {sub U},μ {sub T}) diagram. The best value of the apex coordinates is determined as A = 8724 ± 160, D = −3661 ± 530. We also determined the orbit of the cluster and found that NGC 2158 moves almost in the solar antapex direction. The resulting spatial velocity of NGC 2158 is 51 km s{sup −1}. A significant oscillation along the Z-coordinate up to 529 pc is detected. Various scenarios regarding the origin of this cluster are also discussed.

42 ENGINEERING↗

CLASSY IV. Exploring UV Diagnostics of the Interstellar Medium in Local High- z Analogs at the Dawn of the JWST Era

The Cosmic Origins Spectrograph (COS) Legacy Archive Spectroscopic SurveY (CLASSY) provides the first high resolution spectral catalog of 45 local high-z analogs in the ultraviolet (UV; 1200–2000 Å) to investigate their stellar and gas properties. Here we present a toolkit of UV interstellar medium (ISM) diagnostics, analyzing the main emission lines of CLASSY spectra (N IV] λλ1483,87, C IV λλ1548,51, He IIλ1640, O III]λλ1661,6, Si III] λλ1883,92, C III] λ1907,9). Specifically, our aim is to provide accurate diagnostics for the reddening E(B - V), electron density n e , electron temperature T e , metallicity 12+log(O/H), and ionization parameter log(U), taking the different ISM ionization zones into account. We calibrate our UV toolkit using well-known optical diagnostics, analyzing archival optical spectra for all CLASSY targets. We find that UV density diagnostics estimate n e values that are ~1–2 dex higher (e.g., n e (C III] λλ1907,9) ~ 10 4 cm -3 ) than those inferred from their optical counterparts (e.g., n e ([S II]λλ6717,31) ~ 10 2 cm -3 ; n e ([Ar IV]λλ4714,41) ~ 10 3 cm -3 ). T e derived from the hybrid ratio [O III] λ1666/λ5007 proves to be reliable, implying differences in determining 12+log(O/H) compared to the optical counterpart O III] λ4363/[O III] λ5007 within ~ ±0.3 dex. We also investigate the relation between the stellar and gas E(B - V), finding consistent values at high specific star formation rates (sSFRs; log sSFR ≳ -8 yr -1 ), while at low sSFRs we confirmed an excess of dust attenuation in the gas. Finally, we investigate UV line ratios and equivalent widths to provide correlations with 12+log (O/H) and log(U), but note that there are degeneracies between the two. With this suite of UV-based diagnostics, we illustrate the pivotal role CLASSY plays in understanding the chemical and physical properties of high-z systems that JWST can observe in the rest-frame UV.

79 ASTRONOMY AND ASTROPHYSICS↗

Modeling Dust Production, Growth, and Destruction in Reionization-era Galaxies with the CROC Simulations: Methods and Parameter Exploration

We introduce a model for the explicit evolution of interstellar dust in a cosmological galaxy formation simulation. We post-process a simulation from the Cosmic Reionization on Computers project, integrating an ordinary differential equation for the evolution of the dust-to-gas ratio along pathlines in the simulation sampled with a tracer particle technique. This model incorporates the effects of dust grain production in asymptotic giant branch star winds and supernovae, grain growth due to the accretion of heavy elements from the gas phase of the interstellar medium, and grain destruction due to thermal sputtering in the high-temperature gas of supernova remnants due to thermal sputtering. A main conclusion of our analysis is the importance of a carefully chosen dust destruction model, for which different reasonable parameterizations can predict very different values at the ∼100 pc resolution of the interstellar medium (ISM) in our simulations. We run this dust model on the single most massive galaxy in a 10 h$^{−1}$ comoving megaparsec box, which attains a stellar mass of ∼2 × 10$^{9}$ M $_{⊙}$ by z = 5. We find that the model is capable of reproducing dust masses and dust-sensitive observable quantities broadly consistent with existing data from high-redshift galaxies. The total dust mass in the simulated galaxy is somewhat sensitive to parameter choices for the dust model, especially the timescale for grain growth due to accretion in the ISM. Consequently, observable quantity observations that can constrain galaxy dust masses at these epochs are potentially useful for placing constraints on dust physics.

79 ASTRONOMY AND ASTROPHYSICS↗

Using Host Galaxy Photometric Redshifts to Improve Cosmological Constraints with Type Ia Supernovae in the LSST Era

We perform a rigorous cosmology analysis on simulated Type Ia supernovae (SNe Ia) and evaluate the improvement from including photometric host galaxy redshifts compared to using only the "z spec " subset with spectroscopic redshifts from the host or SN. We use the Deep Drilling Fields (~50 deg 2 ) from the Photometric LSST Astronomical Time-Series Classification Challenge (PLAsTiCC) in combination with a low-z sample based on Data Challenge2. The analysis includes light-curve fitting to standardize the SN brightness, a high-statistics simulation to obtain a bias-corrected Hubble diagram, a statistical+systematics covariance matrix including calibration and photo-z uncertainties, and cosmology fitting with a prior from the cosmic microwave background. Compared to using the z spec subset, including events with SN+host photo-z results in (i) more precise distances for z > 0.5, (ii) a Hubble diagram that extends 0.3 further in redshift, and (iii) a 50% increase in the Dark Energy Task Force figure of merit (FoM) based on the w 0 w a CDM model. Analyzing 25 simulated data samples, the average bias on w 0 and w a is consistent with zero. The host photo-z systematic of 0.01 reduces FoM by only 2% because (i) most z < 0.5 events are in the z spec subset, (ii) the combined SN+host photo-z has ×2 smaller bias, and (iii) the anticorrelation between fitted redshift and color self-corrects distance errors. To prepare for analyzing real data, the next SN Ia cosmology analysis with photo-zs should include non–SN Ia contamination and host galaxy misassociations.

79 ASTRONOMY AND ASTROPHYSICS↗

RTN-008: Rubin Observatory Processing of Gravitational Wave TOO Data in the Early Operations Era

Since the watershed discovery of an electromagnetic counterpart to the LIGO/VIRGO gravitational wave source GW170817, multi-messenger astrophysics has emerged as a major area of strategic focus for the NSF. Rubin Observatory’s depth, survey speed, and data management systems will make it a key asset in the search for EM counterparts. Exploiting this capability during the phases of Rubin commissioning and early operations that coincide with GW observing run O4 may require special actions, however. We discuss potential approaches to data access, template building, and special data processing.

79 ASTRONOMY AND ASTROPHYSICS↗

Deactivation of Building 9206 - A Manhattan Project Era Facility

Building 9206 at the Y-12 National Security Complex was constructed in 1944 for the Manhattan Project as a predecessor to the much larger Building 9212. The purpose of Building 9206 was to perform chemical recycle, metal production, and recover of highly enriched uranium, as well as process product from the electromagnetic separation process.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Data Storage for HEP Experiments in the Era of High-Performance Computing

As particle physics experiments push their limits on both the energy and the intensity frontiers, the amount and complexity of the produced data are also expected to increase accordingly. With such large data volumes, next-generation efforts like the HL-LHC and DUNE will rely even more on both high-throughput (HTC) and high-performance (HPC) computing clusters. Full utilization of HPC resources requires scalable and efficient data-handling and I/O. For the last few decades, ROOT has been used by most HEP experiments to store data. However, other storage technologies like HDF5 may perform better in HPC environments. Initial explorations with HDF5 have begun using ATLAS, CMS and DUNE data; the DUNE experiment has also adopted HDF5 for its data-acquisition system. This paper presents the future outlook of the HEP computing and the role of HPC, and a summary of ongoing and future works to use HDF5 as a possible data storage technology for the HEP experiments to use in HPC environments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A New Era for Solar and Storage: Partnering for Continued Success

Solar energy has grown faster than experts projected. Energy storage technologies are poised to repeat that success, enabling a partnership to keep the lights on even after the sun sets. As current impacts and growing threats of climate change become more visible and the world accelerates efforts to adopt new clean-energy technology, electricity generation from solar and wind is playing an increasing role in the energy system. However, it can be confusing - we hear that solar has great potential, but we also hear that solar and wind are too small to make a meaningful difference, providing just 3% and 6% of the world's electricity in 2020, respectively (1). What is the reality and what can we expect in the coming years? This article focuses on solar, but wind has an equally impressive and interesting story. This article reviews how prices for solar have dropped dramatically and deployment has increased correspondingly to the point where solar is almost half of the new electricity generating capacity being installed globally today. It shows how solar-generated electricity has grown to the point where we need to pair it with storage or other strategies for balancing electricity supply and demand. The article also explores how lithium-ion batteries are replicating solar technology's big success and discusses new storage technologies that are being developed.

14 SOLAR ENERGY↗

Towards an Era of Low-Temperature Integral Critical Experiments: Surrogate Testing of Low-Temperature TEX Configurations

United States and IAEA regulations for the transportation of radioactive materials require that fissile materials must be subcritical under expected ambient temperatures ranging from -40°C to 38°C. While historical experiments have been conducted at room and elevated temperatures, no criticality integral benchmarks exist for temperatures below room temperature. The Low-Temperature Thermal Epithermal eXperiments (LT-TEX) aim to provide benchmark evaluations down to -40°C. The LT-TEX design incorporates stacked HEU plates interspersed with varying thicknesses of polyethylene disks to provide varying levels of moderation, with five configurations at 20°C having already been benchmarked. A novel vacuum/cryogenic chamber was fabricated to contain the LT-TEX configurations in a thermally isolated environment and cool it to -40°C. Prior to testing with fissile materials, testing with surrogate fuel plates was performed to characterize the thermal properties of the system, ensure no condensation forms on the stack, and to test that the uranium plates would not warp, or fracture during the thermal cycling. Surrogate testing has characterized the cryogenic chamber and verified its viability to perform the benchmark experiments, allowing for the next steps in the LT-TEX experimental campaign. The results of the surrogate testing are discussed and compared to heat transfer calculations performed as part of the experiment design process, to establish confidence in the thermal behavior of the system.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Fermilab Main Injector and Recycler Operations in the Megawatt Era

Significant upgrades to Fermilab's accelerator complex have accompanied the development of LBNF (the Long Baseline Neutrino Facility) and DUNE (Deep Underground Neutrino Experiment). These improvements will facilitate 1-MW operation of the NuMI (Neutrinos at the Main Injector) beam for the first time this year through changes to the Recycler slip-stacking procedure and shortening of the Main Injector ramp time. The modifications to the Recycler slip-stacking and efforts to reduce the duration of the Main Injector ramp will be discussed. Additionally, details regarding further shortening of the ramp time and the subsequent impacts on future accelerator operations are presented.

43 PARTICLE ACCELERATORS↗