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At least 199 records · Page 11

Web-based visual data exploration for improved radiological source detection

Radiation detection can provide a reliable means of detecting radiological material. Such capabilities can help to prevent nuclear and/or radiological attacks, but reliable detection in uncontrolled surroundings requires algorithms that account for environmental background radiation. The Berkeley Data Cloud (BDC) facilitates the development of such methods by providing a framework to capture, store, analyze, and share data sets. In the era of big data, both the size and variety of data make it difficult to explore and find data sets of interest and manage the data. Thus, in the context of big data, visualization is critical for checking data consistency and validity, identifying gaps in data coverage, searching for data relevant to an analyst's use cases, and choosing input parameters for analysis. Downloading the data and exploring it on an analyst's desktop using traditional tools are no longer feasible due to the size of the data. This study describes the design and implementation of a visualization system that addresses the problems associated with data exploration within the context of the BDC. Finally, the visualization system is based on a JavaScript front end communicating via REST with a back end web server.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Exploring Effective Best Management Practices in the Miyun Reservoir Watershed, China

Miyun reservoir watershed is a major source of drinking water for China’s capital, Beijing, which has a population of 21.75 million. Recently, the capacity of the Miyun reservoir to supply clean drinking water is threatened by increasing eutrophication (or algae bloom), mainly due to the discharge of wastewater and excessive fertilization application in the upstream watershed. Therefore, there is an urgent need to design effective best management practices (BMPs) to reduce upstream nutrient load and improve water quality in the Miyun reservoir. In this study, we built a watershed model (i.e. the Soil and Water Assessment Tool) in the Miyun Reservoir Watershed (MRW), and calibrated and validated it using long term sediment, nitrogen (N) and phosphorus (P) data. Further, we developed a Markov Chain based multi-objective optimization program to explore optimal BMPs with tradeoffs between economic costs and water quality responses. With the watershed model and the multi-objective optimization algorithms, we explored potential effectiveness of BMPs under two scenarios that are currently being considered: scenario 1 assumes funding of BMP implementation is from national grants and targets high water quality standard, while scenario 2 assumes funding is from farmers and targets water quality that barely meet the drinking water standard. We found substantial discrepancy between these two scenarios with respect to type and spatial configuration of BMPs and associated economic costs, highlighting the need of reconciling concerns from different stakeholders in order to arrive at a BMP plan that all parties will agree upon. In addition, we found that cross-subwatershed coordination and targeting flood season instead of year-round water quality standards could pronouncedly reduce economic cost of BMP implementation while not substantially degrade water quality. The watershed scale optimization method developed here hold the promise serve as an effective tool to explore tradeoffs between economic costs, water quality improvements, and decisions makers and stakeholders’ concerns in BMPs design, thereby informing sustainable watershed scale water resources management.

Qiu, Jiali↗

Exploring the Complex Chemistry of Uranium within Molten Chloride Salts

Harsh environments represent a unique opportunity to explore new frontiers in chemistry while developing novel tools to meet global needs. Exploring the chemistry of uranium within molten salts is a key example. Actinide chemistry within the highly ionic environment of a molten salt is poorly understood, particularly in the presence of common salt impurities or without active oxidation state control. Delving into this chemistry can provide new insight into actinide and f-electron interactions. Furthermore, expanding our chemical knowledge can also enable advances in and deployment of molten salt reactors or molten salt recycle schemes. Both molten salt applications aim towards providing green, reliable, and equitable energy as well as critical materials for the world. Here the utilization of visible absorbance and Raman spectroscopies to understand and quantify U within chloride-based salt eutectics is discussed. Furthermore, machine learning techniques in the form of chemometric modelling are developed and described, providing advanced analytical tools to quantify and characterize the U present. In conclusion, these tools are then leveraged to monitor and explore the dynamic fundamental chemistry of U within chloride-based salt melts.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Beyond Optimization: Exploring Novelty Discovery in Autonomous Experiments

Autonomous experiments (AEs) are transforming how scientific research is conducted by integrating artificial intelligence with automated experimental platforms. Current AEs primarily focus on the optimization of a predefined target; while accelerating this goal, such an approach limits the discovery of unexpected or unknown physical phenomena. Here, we introduce a novel framework, INS 2 ANE (Integrated Novelty Score−Strategic Autonomous Non-Smooth Exploration), to enhance the discovery of novel phenomena in autonomous microscopy experimentation. Our method integrates two key components: (1) a novelty scoring system that evaluates the uniqueness of experimental results and (2) a strategic sampling mechanism that promotes exploration of under-sampled regions even if they appear less promising by conventional criteria. We validate this approach on a preacquired data set with a known ground truth comprising of image−spectral pairs. We further implement the process on autonomous scanning probe microscopy experiments. INS 2 ANE significantly increases the diversity of explored phenomena in comparison to conventional optimization routines, enhancing the likelihood of discovering previously unobserved phenomena. These results demonstrate the potential for autonomous microscopy experiments to enhance the scientific discovery by navigating complex experimental spaces to uncover novel phenomena.

Materials↗

Deep reaction network exploration at a heterogeneous catalytic interface

Characterizing the reaction energies and barriers of reaction networks is central to catalyst development. However, heterogeneous catalytic surfaces pose several unique challenges to automatic reaction network characterization, including large sizes and open-ended reactant sets, that make ad hoc network construction the current state-of-the-art. Here, we show how automated network exploration algorithms can be adapted to the constraints of heterogeneous systems using ethylene oligomerization on silica-supported single-site Ga 3+ as a model system. Using only graph-based rules for exploring the network and elementary constraints based on activation energy and size for identifying network terminations, a comprehensive reaction network is generated and validated against standard methods. The algorithm (re)discovers the Ga-alkyl-centered Cossee-Arlman mechanism that is hypothesized to drive major product formation while also predicting several new pathways for producing alkanes and coke precursors. These results demonstrate that automated reaction exploration algorithms are rapidly maturing towards general purpose capability for exploratory catalytic applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SANE: strategic autonomous non-smooth exploration for multiple optima discovery in multi-modal and non-differentiable black-box functions

Both computational and experimental material discovery bring forth the challenge of exploring multidimensional and multimodal parameter spaces, such as phase diagrams of Hamiltonians with multiple interactions, composition spaces of combinatorial libraries, material structure image spaces, and molecular embedding spaces. Often these systems are black-boxes and time-consuming to evaluate, which resulted in strong interest towards active learning methods such as Bayesian optimization (BO). However, these systems are often noisy which make the black box function severely multi-modal and non-differentiable, where a vanilla BO can get overly focused near a single or faux optimum, deviating from the broader goal of scientific discovery. To address these limitations, here we developed Strategic Autonomous Non-Smooth Exploration (SANE) to facilitate an intelligent Bayesian optimized navigation with a proposed cost-driven probabilistic acquisition function to find multiple global and local optimal regions, avoiding the tendency to becoming trapped in a single optimum. To distinguish between a true and false optimal region due to noisy experimental measurements, a human (domain) knowledge driven dynamic surrogate gate is integrated with SANE. We implemented the gate-SANE into pre-acquired piezoresponse spectroscopy data of a ferroelectric combinatorial library with high noise levels in specific regions, and piezoresponse force microscopy (PFM) hyperspectral data. SANE demonstrated better performance than classical BO to facilitate the exploration of multiple optimal regions and thereby prioritized learning with higher coverage of scientific values in autonomous experiments. Our work showcases the potential application of this method to real-world experiments, where such combined strategic and human intervening approaches can be critical to unlocking new discoveries in autonomous research.

Biswas, Arpan [University of Tennessee, Knoxville,↗

Exploring the free energy surface using ab initio molecular dynamics

Efficient exploration of the configuration space and identification of metastable structures are challenging from both computational as well as algorithmic perspectives. Here, we extend the recently proposed orderparameter aided temperature accelerated sampling schemes to efficiently and systematically explore free energy surfaces, and search for metastable states and reaction pathways within the framework of density functional theory based molecular dynamics. The sampling method is applied to explore the relevant parts of the configuration space in prototypical materials SiO 2 and Ti to identify the different metastable structures corresponding to different phases in these materials. In addition, we use the string method in collective variables to study the melting pathways in the high pressure cotunnite phase of SiO 2 and the hcp to fcc phase transition in Ti.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes

Secondary metabolites are compounds not essential for an organism’s development, but provide significant ecological and physiological benefits. These compounds have applications in medicine, biotechnology and agriculture. Their production is encoded in biosynthetic gene clusters (BGCs), groups of genes collectively directing their biosynthesis. The advent of metagenomics has allowed researchers to study BGCs directly from environmental samples, identifying numerous previously unknown BGCs encoding unprecedented chemistry. Here, we present the BGC Atlas (https://bgc-atlas.cs.uni-tuebingen.de), a web resource that facilitates the exploration and analysis of BGC diversity in metagenomes. The BGC Atlas identifies and clusters BGCs from publicly available datasets, offering a centralized database and a web interface for metadata-aware exploration of BGCs and gene cluster families (GCFs). We analyzed over 35 000 datasets from MGnify, identifying nearly 1.8 million BGCs, which were clustered into GCFs. The analysis showed that ribosomally synthesized and post-translationally modified peptides are the most abundant compound class, with most GCFs exhibiting high environmental specificity. We believe that our tool will enable researchers to easily explore and analyze the BGC diversity in environmental samples, significantly enhancing our understanding of bacterial secondary metabolites, and promote the identification of ecological and evolutionary factors shaping the biosynthetic potential of microbial communities.

59 BASIC BIOLOGICAL SCIENCES↗

Exploring experimental conditions to reduce uncertainties in the optical potential

Uncertainty quantification for nuclear theories has gained a more prominent role in the field, with more groups attempting to understand the uncertainties in their calculations. However, recent studies have shown that the uncertainties on the optical potentials are too large for the theory to be useful. The goal of this work is to explore possible experimental conditions that may reduce the uncertainties on elastic scattering and single-nucleon transfer cross sections that come from the fitting of the optical model parameters to experimental data. Using Bayesian methods, we explore the effect of the uncertainties of optical model parameters on the angular grid of the differential cross section, including cross-section data at nearby energies, and changes in the experimental error bars. We also study the effect on the resulting uncertainty when other observables are included in the fitting procedure, particularly the total (reaction) cross sections. We study proton and neutron elastic scattering on 48 Ca and 208 Pb. We explore the parameter space with the Markov-chain Monte Carlo method, produce posterior distributions for the optical model parameters, and construct the corresponding 95% confidence intervals on the elastic-scattering cross sections. We also propagate the uncertainties on the optical potentials to the 48 Ca(d,p) 49 Ca(g.s.) and 208 Pb(d,p) 209 Pb(g.s.) cross sections. We find little sensitivity to the angular grid and an improvement of up to a factor of 2 on the uncertainties by including data at a nearby energy. Although reducing the error bars on the data does reduce the uncertainty, the gain is often considerably smaller than one would naively expect. We also find that the inclusion of total reaction cross section can improve the uncertainty although the magnitude of the effect depends strongly on the cases considered.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A Critical Exploration of the Efficiency Impacts of Demand Response From HVAC in Commercial Buildings

Increasing quantities of renewable energy generation has yielded a need for greater energy storage capacity in power systems. Thermal storage in variable air volume (VAV) heating, ventilation, and air conditioning (HVAC) in commercial buildings has been identified as an inexpensive source of grid storage, but the true costs are not known. Recent literature explores the inefficiency associated with providing grid services from these HVAC-based demand response (DR) resources by employing a battery analogy to calculate round-trip efficiency (RTE). Results vary significantly across studies and in some cases reported efficiencies are strikingly low. This article has three objectives to address these prior results. First, we synthesize and expand on insights into existing literature by systematically exploring the potential causes for the discrepancies in results. We reinforce previous work indicating baseline modeling may drive differences across studies and deduce that control accuracy plays a role in the major differences between experiments and simulation. Second, we discuss why the RTE metric is problematic for DR applications, discuss another proposed metric, additional energy consumption (AEC), and propose an extension, which we call uninstructed energy consumption (UEC), to evaluate DR performance. Finally, we explore the merits of different metrics using experimental data and highlight UEC's reduced sensitivity to the characteristics of the DR signal than previously proposed metrics.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

A Visual Analytics Paradigm Enabling Trillion-Edge Graph Exploration

We present a visual analytics paradigm and a system prototype for exploring web-scale graphs. A web-scale graph is described as a graph with ~one trillion edges and ~50 billion vertices. While there is an aggressive R&D effort in processing and exploring web-scale graphs among internet vendors such as Facebook and Google, visualizing a graph of that scale still remains an underexplored R&D area. The paper describes a nontraditional peek-and-filter strategy that facilitates the exploration of a graph database of unprecedented size for visualization and analytics. We demonstrate that our system prototype can 1) preprocess a graph with ~25 billion edges in less than two hours and 2) support database query and visualization on the processed graph database afterward. Based on our computational performance results, we argue that we most likely will achieve the one trillion edge mark (a computational performance improvement of 40 times) for graph visual analytics in the near future.

graph visualization↗

Information-Theoretic Exploration of Multivariate Time-Varying Image Databases

Modern scientific simulations produce very large datasets, making interactive exploration of such data computationally prohibitive. An increasingly common data reduction technique is to store visualizations and other data extracts in a database. The Cinema project is one such approach, storing visualizations in an image database for post hoc exploration and interactive image-based analysis. This work focuses on developing efficient algorithms that can quantify various types of multivariate dependencies existing within multi-variable datasets. It applies specific mutual information measures for the quantification of salient regions from multivariate image data. Here, using such information measures, the opacity of the images is modulated so that the salient regions are automatically highlighted and the domain scientists can interactively explore the most relevant regions for scientific discovery.

97 MATHEMATICS AND COMPUTING↗

BioBits™ Explorer: A modular synthetic biology education kit

Hands-on demonstrations greatly enhance the teaching of science, technology, engineering, and mathematics (STEM) concepts and foster engagement and exploration in the sciences. While numerous chemistry and physics classroom demonstrations exist, few biology demonstrations are practical and accessible due to the challenges and concerns of growing living cells in classrooms. We introduce BioBits™ Explorer, a synthetic biology educational kit based on shelf-stable, freeze-dried, cell-free (FD-CF) reactions, which are activated by simply adding water. The FD-CF reactions engage the senses of sight, smell, and touch with outputs that produce fluorescence, fragrances, and hydrogels, respectively. We introduce components that can teach tunable protein expression, enzymatic reactions, biomaterial formation, and biosensors using RNA switches, some of which represent original FD-CF outputs that expand the toolbox of cell-free synthetic biology. The BioBits™ Explorer kit enables hands-on demonstrations of cutting-edge science that are inexpensive and easy to use, circumventing many current barriers for implementing exploratory biology experiments in classrooms.

59 BASIC BIOLOGICAL SCIENCES↗

AEDGE: Atomic Experiment for Dark Matter and Gravity Exploration in Space

We propose in this White Paper a concept for a space experiment using cold atoms to search for ultra-light dark matter, and to detect gravitational waves in the frequency range between the most sensitive ranges of LISA and the terrestrial LIGO/Virgo/KAGRA/INDIGO experiments. This interdisciplinary experiment, called Atomic Experiment for Dark Matter and Gravity Exploration (AEDGE), will also complement other planned searches for dark matter, and exploit synergies with other gravitational wave detectors. We give examples of the extended range of sensitivity to ultra-light dark matter offered by AEDGE, and how its gravitational-wave measurements could explore the assembly of super-massive black holes, first-order phase transitions in the early universe and cosmic strings. AEDGE will be based upon technologies now being developed for terrestrial experiments using cold atoms, and will benefit from the space experience obtained with, e.g., LISA and cold atom experiments in microgravity. This paper is based on a submission (v1) in response to the Call for White Papers for the Voyage 2050 long-term plan in the ESA Science Programme. ESA limited the number of White Paper authors to 30. However, in this version (v2) we have welcomed as supporting authors participants in the Workshop on Atomic Experiments for Dark Matter and Gravity Exploration held at CERN: ({\tt https://indico.cern.ch/event/830432/}), as well as other interested scientists, and have incorporated additional material.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

From Gargamelle to MINERvA: exploring the structure of the nucleon with neutrinos

Neutrino scattering experiments have been exploring the structure of the nucleon with Deep-Inelastic Scattering for over 50 years. Although hints of nucleon structure were available using CERN’s first neutrino beam in the 1960s, the study actually started quantitatively in the early 1970s with the Gargamelle heavy liquid bubble chamber that produced first neutrino confirmation of scaling. This study of nucleon structure continued with both bubble chambers and more massive electronic detectors that, with higher energy neutrino beams and $Q^2$ reach, examined the breaking of this scaling while testing Quantum Chromodynamics. Here, a significant factor when including neutrino explorations of nucleon structure in the overall picture is that to gather significant statistics, neutrino experiments have had to use heavier nuclear targets. It has been experimentally demonstrated that the structure of the nucleon in the nuclear environment is indeed different than the free nucleon structure. Understanding this modified structure has played an important part in the experimental and theoretical exploration of nucleon structure by neutrinos and is one of the important goals of the on-going MINERvA experiment at Fermilab.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

(Invited) Modeling Electrolyzers: Exploring the Applied Voltage Breakdown

To commercialize successfully polymer-electrolyte electrolyzers and optimize their performance, one requires a detailed understanding of the underlying physics and phenomena. Mathematical modeling is ideally suited to explore such intricacies. In this Tutorial, the modeling equations and approaches towards both proton- and hydroxide-conducting polymer electrolyzers will be detailed. This includes the introduction of the applied voltage breakdown that separates the overall polarization curve into its constitutive parts such that the limiting mechanisms can be ascertained. Throughout, different case studies will be explored including impacts of bubble generation, liquid versus vapor feed, and pH changes due to carbonate and hydroxide solution feeds. A key focus of the Tutorial will be in exploring and describing the various transport and competing phenomena within the electrolyzer cell.

42 ENGINEERING↗

The MG-RAST API explorer: an on-ramp for RESTful query composition

Background The MG-RAST API provides search capabilities and delivers organism and function data as well as raw or annotated sequence data via the web interface and its RESTful API. For casual users, however, RESTful APIs are hard to learn and work with. Results We created the graphical MG-RAST API explorer to help researchers more easily build and export API queries; understand the data abstractions and indices available in MG-RAST; and use the results presented in-browser for exploration, development, and debugging. Conclusions The API explorer lowers the barrier to entry for occasional or first-time MG-RAST API users.

59 BASIC BIOLOGICAL SCIENCES↗

Innovative Exploration Techniques for Geothermal Assessment at Jemez Pueblo, New Mexico

Surface exploration methods like geological mapping, mineralogical analysis, hydrogeochemistry, magnetotelluric as well as seismic, have been used to analyze the study area and identify a location for a production size exploration well. After that location has been identified in a blind resource scenario, a 5,657 feet deep deviated production size exploration well has been drilled. The surface casing is 13 3/8 inch with open hole starting at 4,136 feet. The well has been designed to be deepened up to 8,000 feet if needed. The first 4,180 feet have been sufficiently analyzed and were considered only of direct use interest prior to drilling. That has been confirmed. The remaining depth couldn't be logged by the time the report has been submitted because the well had an obstruction at 4,180 feet. Currently the power production potential for the drilling location cannot be determined without additional work-over of the well. The seismic conducted prior to drilling was a 100% success, providing a clear image of the subsurface and allowing for geosteering to be fact based and on target. Once the obstruction has been removed, work can continue to determine the power generation potential at that location.

15 GEOTHERMAL ENERGY↗