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At least 199 records · Page 11

Enhancing the formation of ionic defects to study the ice Ih/XI transition with molecular dynamics simulations

Ice Ih, the common form of ice in the biosphere, contains proton disorder. Its proton-ordered counterpart, ice XI, is thermodynamically stable below 72 K. However, the formation of ice XI is kinetically hindered, and experimentally it is obtained by doping with KOH. Doping creates ionic defects that promote the migration of protons and the associated change in proton configuration. In this article, we mimic the effect of doping with a bias potential that enhances the formation of ionic defects in molecular dynamics simulations. The recombination of the ions thus formed proceeds through fast migration of the hydroxide along hydrogen bond loops, providing a physical and expedite way to change the proton configuration. Here, a key ingredient of this approach is a machine learning potential trained with density functional theory data and capable of modelling molecular dissociation. We exemplify the usefulness of this idea by studying the order-disorder transition using an appropriate order parameter that distinguishes the proton environments in ice Ih and XI. We calculate the changes in free energy, enthalpy, and entropy associated with the transition. Our estimated entropy agrees with experiment within the error bars of the calculation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Gravitational wave signals from short-lived topological defects in the MSSM

Supersymmetric theories, including the minimal supersymmetric standard model, usually contain many scalar fields whose potentials are absent in the exact supersymmetric limit and within the renormalizable level. Since their potentials are vulnerable to the finite energy density of the Universe through supergravity effects, these flat directions have nontrivial dynamics in the early Universe. Recently, we have pointed out that a flat direction may have a positive Hubble induced mass term during inflation whereas a negative one after inflation. In this case, the flat direction stays at the origin of the potential during inflation and then obtain a large vacuum expectation value after inflation. After that, when the Hubble parameter decreases down to the mass of the flat direction, it starts to oscillate around the origin of the potential. In this paper, we investigate the dynamics of the flat direction with and without higher dimensional superpotentials and show that topological defects, such as cosmic strings and domain walls, form at the end of inflation and disappear at the beginning of oscillation of the flat direction. We numerically calculate their gravitational signals and find that the observation of gravitational signals would give us information of supersymmetric scale, the reheating temperature of the Universe, and higher dimensional operators.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Orbital superconductivity, defects, and pinned nematic fluctuations in the doped iron chalcogenide FeSe 0.45 Te 0.55

We demonstrate that the differential conductance, dI/dV , measured via spectroscopic imaging scanning tunneling microscopy in the doped iron chalcogenide FeSe 0.45 Te 0.55 , possesses a series of characteristic features that allow one to extract the orbital structure of the superconducting gaps. This yields nearly isotropic superconducting gaps on the two hole-like Fermi surfaces, and a strongly anisotropic gap on the electron-like Fermi surface. Moreover, we show that the pinning of nematic fluctuations by defects can give rise to a dumbbell-like spatial structure of the induced impurity bound states, and explains the related C 2 -symmetry in the Fourier transformed differential conductance.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Toxin-Antitoxin systems eliminate defective cells and preserve symmetry in B acillus subtilis biofilms: Defective cells and preserve symmetry in Bacillus subtilis biofilms

Toxin-antitoxin modules are gene pairs encoding a toxin and its antitoxin, and are found on the chromosomes of many bacteria, including pathogens. This paper characterizes the specific contribution of the TxpA and YqcG toxins in elimination of defective cells from developing Bacillus subtilis biofilms. On nutrient limitation, defective cells accumulated in the biofilm breaking its symmetry. Deletion of the toxins resulted in accumulation of morphologically abnormal cells, and interfered with the proper development of the multicellular community. Dual physiological responses are of significance for TxpA and YqcG activation: nitrogen deprivation enhances the transcription of both TxpA and YqcG toxins, and simultaneously sensitizes the biofilm cells to their activity. Furthermore, we demonstrate that while both toxins when overexpressed affect the morphology of the developing biofilm, the toxin TxpA can act to lyse and dissolve pre-established B. subtilis biofilms.

59 BASIC BIOLOGICAL SCIENCES↗

Inhibition of fucosylation of cell wall components by 2‐fluoro 2‐deoxy‐ l ‐fucose induces defects in root cell elongation

Summary Screening of commercially available fluoro monosaccharides as putative growth inhibitors in Arabidopsis thaliana revealed that 2‐fluoro 2‐ l ‐fucose (2F‐Fuc) reduces root growth at micromolar concentrations. The inability of 2F‐Fuc to affect an Atfkgp mutant that is defective in the fucose salvage pathway indicates that 2F‐Fuc must be converted to its cognate GDP nucleotide sugar in order to inhibit root growth. Chemical analysis of cell wall polysaccharides and glycoproteins demonstrated that fucosylation of xyloglucans and of N ‐linked glycans is fully inhibited by 10 μ m 2F‐Fuc in Arabidopsis seedling roots, but genetic evidence indicates that these alterations are not responsible for the inhibition of root development by 2F‐Fuc. Inhibition of fucosylation of cell wall polysaccharides also affected pectic rhamnogalacturonan‐ II ( RG ‐ II ). At low concentrations, 2F‐Fuc induced a decrease in RG ‐ II dimerization. Both RG ‐ II dimerization and root growth were partially restored in 2F‐Fuc‐treated seedlings by addition of boric acid, suggesting that the growth phenotype caused by 2F‐Fuc was due to a deficiency of RG ‐ II dimerization. Closer investigation of the 2F‐Fuc‐induced growth phenotype demonstrated that cell division is not affected by 2F‐Fuc treatments. In contrast, the inhibitor suppressed elongation of root cells and promoted the emergence of adventitious roots. This study further emphasizes the importance of RG ‐ II in cell elongation and the utility of glycosyltransferase inhibitors as new tools for studying the functions of cell wall polysaccharides in plant development. Moreover, supplementation experiments with borate suggest that the function of boron in plants might not be restricted to RG ‐ II cross‐linking, but that it might also be a signal molecule in the cell wall integrity‐sensing mechanism.

Dumont, Marie↗

Effects of Radiation-Induced Defects on Corrosion

The next generation of nuclear reactors will expose materials to conditions that, in some cases, are even more extreme than those in current fission reactors, inevitably leading to new materials science challenges. Radiation-induced damage and corrosion are two key phenomena that must be understood both independently and synergistically, but their interactions are often convoluted. In the light water reactor community, a tremendous amount of work has been done to illuminate irradiation-corrosion effects, and similar efforts are under way for heavy liquid metal and molten salt environments. While certain effects, such as radiolysis and irradiation-assisted stress corrosion cracking, are reasonably well established, the basic science of how irradiation-induced defects in the base material and the corrosion layer influence the corrosion process still presents many unanswered questions. In this review, we summarize the work that has been done to understand these coupled extremes, highlight the complex nature of this problem, and identify key knowledge gaps.

36 MATERIALS SCIENCE↗

Characterizing the nano-structure and defect structure of nano-scaled non-ferrous structural alloys

The presence and interaction of nanotwins, geometrically necessary dislocations, and grain boundaries play a key role in the mechanical properties of nanostructured crystalline materials. Therefore, it is vital to determine the orientation, width and distance of nanotwins, the angle and axis of grain boundary misorientations as well as the type and the distributions of dislocations in an automatic and statistically meaningful fashion in a relatively large area. In this paper, such details are provided using a transmission electron microscope-based orientation microscopy technique called ASTAR™/precession electron diffraction. The remarkable spatial resolution of this technique (~ 2 nm) enables highly detailed characterization of nanotwins, grain boundaries and the configuration of dislocations. This orientation microscopy technique provides the raw data required for the determination of these parameters. The procedures to post-process the ASTAR™/PED datasets in order to obtain the important (and currently largely hidden) details of nanotwins as well as quantifications of dislocation density distributions are described in this study. - Highlights: • EBSD cannot characterize defects such as dislocations, grain boundaries and nanotwins in severely deformed metals. • TEM based orientation microscopy technique called ASTAR™/PED was used to resolve the problem. • Locations and orientations of nanotwins, dislocation density distribution and grain boundary characters can be resolved. • This work provides the bases for further studies on the interactions between dislocations, grain boundaries and nanotwins. • The computation part is explained sufficiently which helps the readers to post process their own data.

36 MATERIALS SCIENCE↗

Understanding the role of selenium in defect passivation for highly efficient selenium-alloyed cadmium telluride solar cells

Electricity produced by cadmium telluride (CdTe) photovoltaic modules is the lowest-cost electricity in the solar industry, and now undercuts fossil fuel-based sources in many regions of the world. This is due to recent efficiency gains brought about by alloying selenium into the CdTe absorber, which has taken cell efficiency from 19.5% to its current record of 22.1%. Although the addition of selenium is known to reduce the bandgap of the absorber material, and hence increase the cell short-circuit current, this effect alone does not explain the performance improvement. Here, by means of cathodoluminescence and secondary ion mass spectrometry, we show that selenium enables higher luminescence efficiency and longer diffusion lengths in the alloyed material, indicating that selenium passivates critical defects in the bulk of the absorber layer. Here, this passivation effect explains the record-breaking performance of selenium-alloyed CdTe devices, and provides a route for further efficiency improvement that can result in even lower costs for solar-generated electricity.

14 SOLAR ENERGY↗