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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Coarse-to-Fine Multi-Task Training of Convolutional Neural Networks for Automated Information Extraction from Cancer Pathology Reports

Information extraction and coding of free-text pathology reports is an important activity for cancer registries to support national cancer surveillance. Cancer registrars must process high volumes of pathology reports on an annual basis. In this study, we investigated an automated approach using a coarse-to-fine training of convolutional neural networks (CNNs) for extracting the primary site, histological grade and laterality from unstructured cancer pathology text reports. Our proposed training scheme consists of two stages. In the first stage, the multi-task learning (MTL) with hard parameter sharing approach is used to train a multi-task MT-CNN model for all the tasks. Then, the TM-CNN parameters are used to initialize a CNN model for each task to be fine trained individually using its corresponding dataset. The performance of our proposed model was compared against a state-of-the-art CNN and the commonly used SVM classifier. We observed that the proposed model consistently outperformed the base line models, especially for the less prevalent classes. Specifically, the proposed training approach achieved a micro-F score of 0.7749 over 12 ICD- O-3 topography codes which is a significant improvement as compared with state-of-the-art CNN (0.7101) and the SVM (0.6019) classifiers. Also, the results demonstrate the potential of the proposed method for handling class imbalance within each task. It significantly improves macro-F score by 24% and 12% of the primary site and histology grade tasks, respectively.

Alawad, Mohammed↗
DOE OSTI2021

Convolutional neural network identification of galaxy post-mergers in UNIONS using IllustrisTNG

ABSTRACT The Canada–France Imaging Survey (CFIS) will consist of deep, high-resolution r-band imaging over ∼5000 deg2 of the sky, representing a first-rate opportunity to identify recently merged galaxies. Because of the large number of galaxies in CFIS, we investigate the use of a convolutional neural network (CNN) for automated merger classification. Training samples of post-merger and isolated galaxy images are generated from the IllustrisTNG simulation processed with the observational realism code RealSim. The CNN’s overall classification accuracy is 88 per cent, remaining stable over a wide range of intrinsic and environmental parameters. We generate a mock galaxy survey from IllustrisTNG in order to explore the expected purity of post-merger samples identified by the CNN. Despite the CNN’s good performance in training, the intrinsic rarity of post-mergers leads to a sample that is only ∼6 per cent pure when the default decision threshold is used. We investigate trade-offs in purity and completeness with a variable decision threshold and find that we recover the statistical distribution of merger-induced star formation rate enhancements. Finally, the performance of the CNN is compared with both traditional automated methods and human classifiers. The CNN is shown to outperform Gini–M20 and asymmetry methods by an order of magnitude in post-merger sample purity on the mock survey data. Although the CNN outperforms the human classifiers on sample completeness, the purity of the post-merger sample identified by humans is frequently higher, indicating that a hybrid approach to classifications may be an effective solution to merger classifications in large surveys.

Bickley, Robert W.↗
DOE OSTI2019

Convolutional neural networks for grazing incidence x-ray scattering patterns: thin film structure identification

Nano-structured thin films have a variety of applications from waveguides, gaseous sensors to piezoelectric devices. Grazing Incidence Small Angle x-ray Scattering images enable classification of such materials. One challenge is to determine structure information from scattering patterns alone. This paper highlights the design of multiple Convolutional Neural Networks (CNN) to classify nanoparticle orientation in a thin film by learning scattering patterns. The network was trained on several thin films with a success rate of 94%. We demonstrate CNN robustness under different noises as well as demonstrate the potential of our proposed approach as a strategy to decrease scattering pattern analysis time.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties

The use of machine learning methods for accelerating the design of crystalline materials usually requires manually constructed feature vectors or complex transformation of atom coordinates to input the crystal structure, which either constrains the model to certain crystal types or makes it difficult to provide chemical insights. Here, we develop a crystal graph convolutional neural networks framework to directly learn material properties from the connection of atoms in the crystal, providing a universal and interpretable representation of crystalline materials. Our method provides a highly accurate prediction of density functional theory calculated properties for eight different properties of crystals with various structure types and compositions after being trained with 10 4 data points. Further, our framework is interpretable because one can extract the contributions from local chemical environments to global properties. Using an example of perovskites, we show how this information can be utilized to discover empirical rules for materials design.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Deep Convolutional Neural Networks for Distribution System Fault Classification

Faults happen very frequently in distribution systems. Identifying fault types and phases are of critical importance for outage management, fault location, and service restoration. However, this task becomes very challenging due to measurement scarcity in distribution systems. This paper is among the first few that applies deep learning techniques in distribution system fault classification. Specifically, a sequential Convolutional Neural Network(CNN)-based classifier is developed to identify fault buses and phases. The input to the CNN is the steady-state voltage and current data measured at substations. The fault identification is modeled as a multi-label classification problem. Training data under various fault scenarios are obtained in OpenDSS and Gaussian noises are added to mimic measurement errors. A case study in IEEE 13-feeder test system is conducted with single and multiple bus faults scenarios. Numerical results demonstrate the high accuracy and fast computation of the proposed deep CNN-based fault classification.

Tian, Guanyu↗
DOE OSTI2022

Identification of Grand-design and Flocculent spirals from SDSS using deep convolutional neural network

ABSTRACT Spiral galaxies can be classified into the Grand-designs and Flocculents based on the nature of their spiral arms. The Grand-designs exhibit almost continuous and high contrast spiral arms and are believed to be driven by stationary density waves, while the Flocculents have patchy and low-contrast spiral features and are primarily stochastic in origin. We train a deep convolutional neural network model to classify spirals into Grand-designs and Flocculents, with a testing accuracy of $\mathrm{97.2{{\ \rm per\ cent}}}$. We then use the above model for classifying 1354 spirals from the SDSS. Out of these, 721 were identified as Flocculents, and the rest as Grand-designs. Interestingly, we find the mean asymptotic rotational velocities of our newly classified Grand-designs and Flocculents are 218 ± 86 and 146 ± 67 km s−1, respectively, indicating that the Grand-designs are mostly the high-mass and the Flocculents the intermediate-mass spirals. This is further corroborated by the observation that the mean morphological indices of the Grand-designs and Flocculents are 2.6 ± 1.8 and 4.7 ± 1.9, respectively, implying that the Flocculents primarily consist of a late-type galaxy population in contrast to the Grand-designs. Finally, an almost equal fraction of bars ∼0.3 in both the classes of spiral galaxies reveals that the presence of a bar component does not regulate the type of spiral arm hosted by a galaxy. Our results may have important implications for formation and evolution of spiral arms in galaxies.

Astronomy & Astrophysics↗
NASA NTRS2020

Assistive Relative Pose Estimation for On-orbit Assembly using Convolutional Neural Networks

Accurate real-time pose estimation of spacecraft or object in space is a key capability necessary for on orbit spacecraft servicing and assembly tasks. Pose estimation of objects in space is more challenging than for objects on Earth due to space images containing widely varying illumination conditions, high contrast, and poor resolution in addition to power and mass constraints. In this paper, a convolutional neural network is leveraged to uniquely determine the translation and rotation of an object of interest relative to the camera. The main idea of using CNN model is to assist object tracker used in on space assembly tasks where only feature based method is always not sufficient. The simulation framework designed for assembly task is used to generate dataset for training the modified CNN models and, then results of different models are compared with measure of how accurately models are predicting the pose. Unlike many current approaches for spacecraft or object in space pose estimation, the model does not rely on hand-crafted object-specific features which makes this model more robust and easier to apply to other types of spacecraft. It is shown that the model performs comparable to the current feature-selection methods and can therefore be used in conjunction with them to provide more reliable estimates.

Sonawani, Shubham↗
DOE OSTI2025

Measurement of Atmospheric Neutrino Oscillation Parameters Using Convolutional Neural Networks with 9.3 Years of Data in IceCube DeepCore

The DeepCore subdetector of the IceCube Neutrino Observatory provides access to neutrinos with energies above approximately 5 GeV. Data taken between 2012 and 2021 (3387 days) are utilized for an atmospheric ν μ disappearance analysis that studied 150 257 neutrino-candidate events with reconstructed energies between 5 and 100 GeV. An advanced reconstruction based on a convolutional neural network is applied, providing increased signal efficiency and background suppression, resulting in a measurement with both significantly increased statistics compared to previous DeepCore oscillation results and high neutrino purity. For the normal neutrino mass ordering, the atmospheric neutrino oscillation parameters and their 1 σ errors are measured to be Δ m 32 2 = 2.40 − 0.04 + 0.05 × 10 − 3 eV 2 and sin 2 θ 23 = 0.54 − 0.03 + 0.04 . The results are the most precise to date using atmospheric neutrinos, and are compatible with measurements from other neutrino detectors including long-baseline accelerator experiments. Published by the American Physical Society 2025

Abbasi, R.↗
DOE OSTI2021

Inception Based Deep Convolutional Neural Network for Remaining Useful Life Estimation of Turbofan Engines

Accurate estimation of the remaining useful life (RUL) is a key component of condition based maintenance (CBM) and prognosis and health management (PHM). Data-based models for the estimation of RUL are of particular interest because expert knowledge of systems is not always available and physical modeling is often not feasible. In this paper, a deep convolutional neural network (CNN) architecture is investigated for its ability to estimate the RUL of turbofan engines. The input to the model is a window of time series data collected from the engine under test. Inputting raw sensor data allows features to be learned instead of manually determined. To incorporate the ability to detect features of differing lengths, inception modules are used in the neural network architecture. The model is trained and tested using the new Commercial Modular Aero-Propulsion System Simulation (N-CMAPSS) data set and high prognosis accuracy was achieved. The developed model was used in the 2021 PHM Society Data Challenge and received second place, further validating its ability to accurately estimate RUL.

DeVol, Nathaniel↗
DOE OSTI2021

Automatic detection of impact craters on Al foils from the Stardust interstellar dust collector using convolutional neural networks

NASA's Stardust mission utilized a sample collector composed of aerogel and aluminum foil to return cometary and interstellar particles to Earth. Analysis of the aluminum foil begins with locating craters produced by hypervelocity impacts of cometary and interstellar dust. Interstellar dust craters are typically less than one micrometer in size and are sparsely distributed, making them difficult to find. In this paper, we describe a convolutional neural network based on the VGG16 architecture that achieves high specificity and sensitivity in locating impact craters in the Stardust interstellar collector foils. Finally, we evaluate its implications for current and future analyses of Stardust samples.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

TULIP: An RNA-seq-based Primary Tumor Type Prediction Tool Using Convolutional Neural Networks

Background: With cancer as one of the leading causes of death worldwide, accurate primary tumor type prediction is critical in identifying genetic factors that can inhibit or slow tumor progression. There have been efforts to categorize primary tumor types with gene expression data using machine learning, and more recently with deep learning, in the last several years. Methods In this paper, we developed four 1-dimensional (1D) Convolutional Neural Network (CNN) models to classify RNA-seq count data as one of 17 highly represented primary tumor types or 32 primary tumor types regardless of imbalanced representation. Additionally, we adapted the models to take as input either all Ensembl genes (60,483) or protein coding genes only (19,758). Unlike previous work, we avoided selection bias by not filtering genes based on expression values. RNA-seq count data expressed as FPKM-UQ of 9,025 and 10,940 samples from The Cancer Genome Atlas (TCGA) were downloaded from the Genomic Data Commons (GDC) corresponding to 17 and 32 primary tumor types respectively for training and validating the models. Results: All 4 1D-CNN models had an overall accuracy of 94.7% to 97.6% on the test dataset. Further evaluation indicates that the models with protein coding genes only as features performed with better accuracy compared to the models with all Ensembl genes for both 17 and 32 primary tumor types. For all models, the accuracy by primary tumor type was above 80% for most primary tumor types. Conclusions: We packaged all 4 models as a Python-based deep learning classification tool called TULIP (TUmor CLassIfication Predictor) for performing quality control on primary tumor samples and characterizing cancer samples of unknown tumor type. Further optimization of the models is needed to improve the accuracy of certain primary tumor types.

Jones, Sara↗
DOE OSTI2017

Testing autonomous cyber-physical systems using fuzzing features from convolutional neural networks: work-in-progress

Autonomous cyber-physical systems rely on modern machine learning methods such as deep neural networks to control their interactions with the physical world. Testing of such intelligent cyber-physical systems is a challenge due to the huge state space associated with high-resolution visual sensory inputs. We demonstrate how fuzzing the input using patterns obtained from the convolutional filters of an unrelated convolutional neural network can be used to test computer vision algorithms implemented in intelligent cyber-physical systems. Our method discovers interesting counterexamples to a pedestrian detection algorithm implemented in the popular OpenCV library. Our approach also unearths counterexamples to the correct behavior of an autonomous car similar to NVIDIA's end-to-end self-driving deep neural net running on the Udacity open-source simulator.

Raj, Sunny↗
DOE OSTI2019

Selective Information Extraction Strategies for Cancer Pathology Reports with Convolutional Neural Networks

To trust model predictions, it is important to ensure new data scored by the model comes from the same population used for model training. If the model is used to score new data different than the model’s training data, then predictions and model performance metrics cannot be trusted. Identifying and excluding these anomalous data points is an important task when using models in the real world. Traditional machine learning algorithms and classifiers don’t have the capability to abstain in this case. Here we propose a data-novelty detection algorithm for the Convolutional Neural Network classifier, yielding a rejection score for each new data point scored. It is a post-modeling procedure which examines the distribution of convolution filters to determine if the prediction should be trusted. We apply this algorithm to an information extraction model for a natural language text corpus. We evaluated the algorithm performance using a primary cancer site classification model applied to cancer pathology reports. Results demonstrate that the algorithm is an effective way to exclude cancer pathology reports from model scoring when they do not contain the expected information necessary to accurately classify the primary cancer type.

Yoon, Hong-Jun↗
DOE OSTI2017

Toward large-scale building detection with convolutional neural network using remote sensing images

Establishing up-to-date nationwide building maps is essential to understand urban dynamics, such as estimating population and urban planning and many other applications. However, an efficient and effective solution is yet to be developed. In this paper, for the first time we evaluate three state-of-the-art CNNs for detecting buildings across entire United States using aerial images. The three CNN architectures, fully convolutional neural network, conditional random field as recurrent neural network, and SegNet, support semantic pixel-wise labeling and focus on capturing textural information at multi-scale. We use 1-meter resolution NAIP images as the test data set, and compare the detection results across the three methods. In addition, we propose to combine signed distance function labels with SegNet, which is the preferred CNN architecture identified by our extensive evaluations. The results are further improved in terms of precision, recall rate and the number of building detected. On average, model inference on test images is less than one minute for an area of size $\sim56$ $km^2$. With these promising results and the time required to process images, the framework offers great potential toward country scale building mapping with remote sensing imagery.

Yang, Lexie↗
DOE OSTI2025

Multioutput Convolutional Neural Network for Improved Parameter Extraction in Time-Resolved Electrostatic Force Microscopy Data

Time-resolved scanning probe microscopy methods, like time-resolved electrostatic force microscopy (trEFM), enable imaging of dynamic processes ranging from ion motion in batteries to electronic dynamics in microstructured thin film semiconductors for solar cells. Reconstructing the underlying physical dynamics from these techniques can be challenging due to the interplay of cantilever physics with the actual transient kinetics of interest in the resulting signal. Previously, quantitative trEFM used empirical calibration of the cantilever or feed-forward neural networks trained on simulated data to extract the physical dynamics of interest. Both these approaches are limited by interpreting the underlying signal as a single exponential function, which serves as an approximation but does not adequately reflect many realistic systems. Here, we present a multi-branched, multi-output convolutional neural network (CNN) that uses the trEFM signal in addition to the physical cantilever parameters as input. The trained CNN accurately extracts parameters describing both single-exponential and bi-exponential underlying functions, and more accurately reconstructs real experimental data in the presence of noise. This article demonstrates an application of physics-informed machine learning to complex signal processing tasks, enabling more efficient and accurate analysis of trEFM.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Real-Time Detection of Charge Jumps in Superconducting Qubits with a Convolutional Neural Network

Ionizing radiation from cosmic rays and gammas can induce discontinuous jumps in the environmental charge of superconducting qubits (charge jumps), causing correlated errors that challenge fault-tolerant quantum computing while simultaneously providing a detection signature for quantum sensing applications. Current detection methods operate offline, introducing latency incompatible with in-the-loop qubit control. In this paper, an online detector of charge jumps for superconducting qubits, based on a dilated causal convolutional neural network (DCCNN) designed for in-the-loop deployment on the Quantum Instrumentation Control Kit (QICK) platform, is presented. The network is trained on synthetic Ramsey tomography scans generated from qubit templates measured at the Northwestern Experimental Underground Site (NEXUS) at Fermilab, and translated to FPGA firmware via hls4ml with ap_fixed$\langle 16,6 \rangle$ quantization, reaching a per-inference latency of $6.19 μ$s on the Zynq UltraScale+ RFSoC ZCU216. At this operating point the DCCNN matches the detection efficiency of the established offline $χ^2$ algorithm ($0.843 \pm 0.022$ vs. $0.866 \pm 0.020$ on $|Δq| \in [0.1, 0.5] e$ at matched false-positive rate), while requiring no per-qubit hyperparameter tuning. This shifts charge-jump detection from a post-hoc diagnostic to a control-loop primitive, enabling adaptive protocols that respond to radiation-induced events in situ, with applications to quantum-computing error mitigation and to the use of superconducting qubits as particle detectors.

Gaytan-Villarreal, Daniel [Carnegie Mellon U.]↗
DOE OSTI2019

Application of convolutional neural networks for stellar spectral classification

ABSTRACT Due to the ever-expanding volume of observed spectroscopic data from surveys such as SDSS and LAMOST, it has become important to apply artificial intelligence (AI) techniques for analysing stellar spectra to solve spectral classification and regression problems like the determination of stellar atmospheric parameters Teff, $\rm {\log g}$, and [Fe/H]. We propose an automated approach for the classification of stellar spectra in the optical region using convolutional neural networks (CNNs). Traditional machine learning (ML) methods with ‘shallow’ architecture (usually up to two hidden layers) have been trained for these purposes in the past. However, deep learning methods with a larger number of hidden layers allow the use of finer details in the spectrum which results in improved accuracy and better generalization. Studying finer spectral signatures also enables us to determine accurate differential stellar parameters and find rare objects. We examine various machine and deep learning algorithms like artificial neural networks, Random Forest, and CNN to classify stellar spectra using the Jacoby Atlas, ELODIE, and MILES spectral libraries as training samples. We test the performance of the trained networks on the Indo-U.S. Library of Coudé Feed Stellar Spectra (CFLIB). We show that using CNNs, we are able to lower the error up to 1.23 spectral subclasses as compared to that of two subclasses achieved in the past studies with ML approach. We further apply the trained model to classify stellar spectra retrieved from the SDSS data base with SNR > 20.

Sharma, Kaushal↗
DOE OSTI2019

Pairwise Association of Seismic Arrivals with Convolutional Neural Networks

Correctly determining the association of seismic phases across a network is crucial for developing accurate earthquake catalogs. Nearly all established methods use travel time information as the main criterion for determining associations, and in problems in which earthquake rates are high and many false arrivals are present, many standard techniques may fail to resolve the problem accurately. As an alternative approach, in this work we apply convolutional neural networks (CNNs) to the problem of associations; we train CNNs to read earthquake waveform arrival pairs between two stations and predict the binary classification of whether the two waveforms are from a common source or different sources. Applying the method to a large training dataset of previously cataloged earthquakes in Chile, we obtain >80% true positive prediction rates for high-frequency data (>2 Hz) and stations separated in excess of 100 km. As a secondary benefit, the output of the neural network can also be used to infer predicted phase types of arrivals. Here, the method is ideally applied in conjunction with standard travel-time-based association routines and can be adapted for arbitrary network geometries and applications, so long as sufficient training data are available.

58 GEOSCIENCES↗